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1.
Comput Biol Med ; 164: 107299, 2023 09.
Article in English | MEDLINE | ID: mdl-37552915

ABSTRACT

Anti-inflammatory agents can be synthetic or natural compounds and are often used to attenuate different levels of inflammation. Inflammatory diseases, due to the involvement of multiple systems, are becoming difficult to treat, involve long durations of therapy where applicable, have a high cost of management and have a deleterious impact on public health. The search for natural and synthetic compounds with anti-inflammatory activity is an important strategy in drug design. Bioactive synthetic drugs may be repurposed for other pharmacological applications, and natural product chemical structures offer unlimited opportunities for new drug discoveries due to the unparalleled availability of chemical diversity. Virtual screening of 2774 molecules on the mouse P2X7 protein showed that potential ligands are composed of five flavonoids (narirutin, diosmin, complanatuside, hesperidin, and oroxin B) and other drugs such as velpatasvir, itacitinib and lifitegrast. In vitro studies in mouse cells confirmed the inhibitory activity of the indicated ligands on the P2X7 receptor by applying virtual screening. The behavior of protein bonded to the ligands was verified by analysis of the molecular dynamic simulation trajectories for four of the most potent inhibitor compounds, indicating that the ligands velpatasvir, itacitinib, lithospermic acid and narirutin remained in the binding site indicated by molecular docking.


Subject(s)
Molecular Dynamics Simulation , Receptors, Purinergic P2X7 , Animals , Mice , Molecular Docking Simulation , Ligands , Proteins
2.
Carbohydr Polym ; 218: 136-144, 2019 Aug 15.
Article in English | MEDLINE | ID: mdl-31221314

ABSTRACT

Aqueous and KCl-soluble polysaccharides were extracted from Laurencia dendroidea (Rhodomelaceae, Ceramiales) and their chemical profile was accessed by anion-exchange chromatography, chemical and spectroscopic analyses. The homogeneous agaran DHS-4 (181.3 × 103 g. mol-1, 21.3% of NaSO3) presents A units mostly 2-sulfated (18.9 mol%), nonsubstituted (15.3 mol%) and 6-O-methylated (10.1 mol%), while B units are l-sugars composed predominantly by galactose 6-sulfate precursor units (19.2 mol%) and 3,6-anhydrogalactose (13.8 mol%), besides non-precursor galactose 6-sulfate units bearing d-xylose substituents on C-3 (8.1 mol%). The crude KCl-soluble DHS agaran (20.5% of NaSO3) inhibited proteolysis and hemolysis induced by Lachesis muta and Bothrops jararaca venoms. DHS was able to inhibit up to 75% the L. muta venom hemorrhagic effect and to reduce the lethality displayed by B. jararaca venom, increasing the mice survival time up to 3 times. Therefore, this agaran has high potential to be used as an additional tool to treat snakebite envenomation.


Subject(s)
Hemolysin Proteins/antagonists & inhibitors , Hemostatics/therapeutic use , Laurencia/chemistry , Polysaccharides/therapeutic use , Snake Venoms/antagonists & inhibitors , Sulfuric Acid Esters/therapeutic use , Animals , Bothrops , Hemolysis/drug effects , Hemostatics/chemistry , Hemostatics/isolation & purification , Mice , Polysaccharides/chemistry , Polysaccharides/isolation & purification , Proteolysis/drug effects , Sulfuric Acid Esters/chemistry , Sulfuric Acid Esters/isolation & purification , Viperidae
3.
J Bacteriol ; 186(16): 5442-9, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15292146

ABSTRACT

Xylella fastidiosa is a phytopathogenic bacterium that causes serious diseases in a wide range of economically important crops. Despite extensive comparative analyses of genome sequences of Xylella pathogenic strains from different plant hosts, nonpathogenic strains have not been studied. In this report, we show that X. fastidiosa strain J1a12, associated with citrus variegated chlorosis (CVC), is nonpathogenic when injected into citrus and tobacco plants. Furthermore, a DNA microarray-based comparison of J1a12 with 9a5c, a CVC strain that is highly pathogenic and had its genome completely sequenced, revealed that 14 coding sequences of strain 9a5c are absent or highly divergent in strain J1a12. Among them, we found an arginase and a fimbrial adhesin precursor of type III pilus, which were confirmed to be absent in the nonpathogenic strain by PCR and DNA sequencing. The absence of arginase can be correlated to the inability of J1a12 to multiply in host plants. This enzyme has been recently shown to act as a bacterial survival mechanism by down-regulating host nitric oxide production. The lack of the adhesin precursor gene is in accordance with the less aggregated phenotype observed for J1a12 cells growing in vitro. Thus, the absence of both genes can be associated with the failure of the J1a12 strain to establish and spread in citrus and tobacco plants. These results provide the first detailed comparison between a nonpathogenic strain and a pathogenic strain of X. fastidiosa, constituting an important step towards understanding the molecular basis of the disease.


Subject(s)
Bacterial Proteins/genetics , Gene Expression Profiling , Genome, Bacterial , Virulence Factors/genetics , Virulence/genetics , Xylella/genetics , Xylella/pathogenicity , Adhesins, Bacterial/genetics , Adhesins, Bacterial/physiology , Arginase/genetics , Arginase/physiology , Bacterial Adhesion/genetics , Bacterial Adhesion/physiology , Citrus/microbiology , Down-Regulation , Genes, Bacterial , Genomics/methods , Nitric Oxide/biosynthesis , Nitric Oxide/genetics , Oligonucleotide Array Sequence Analysis , Plant Diseases/microbiology , Nicotiana/microbiology , Xylella/growth & development
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