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1.
J Appl Microbiol ; 134(3)2023 Mar 01.
Article in English | MEDLINE | ID: mdl-36725209

ABSTRACT

AIMS: We aimed to investigate the prevalence of rotavirus and coronavirus in dipterans that commonly inhabit the environment of dairy farms. METHODS AND RESULTS: We collected 217 insect specimens from nine dairy farms, which were examined through hemi-nested RT-PCR followed by Sanger sequencing in search of VP1 and N genes for rotavirus and bovine coronavirus-BCoV, respectively. With a predominance of Muscidae (152/217 = 70%) 11 families of Diptera were identified. Rotavirus A (RVA) and betacoronavirus (BCoV) were detected in 14.7% (32/217) and 4.6% (10/217) of the dipterans, respectively. Sequencing of the amplicons was possible for 11.5% (25/217) of RVA and 0.5% (1/217) of BCoV, confirming the presence of these pathogens. CONCLUSIONS: Our findings highlight the role of dipterans as carriers of RVA and BCoV of great relevance for public and animal health.


Subject(s)
Cattle Diseases , Diptera , Rotavirus Infections , Rotavirus , Animals , Cattle , Rotavirus/genetics , Betacoronavirus , Farms , Insecta , Feces , Cattle Diseases/epidemiology , Diarrhea/epidemiology , Phylogeny , Genotype
2.
Pathogens ; 11(12)2022 Dec 19.
Article in English | MEDLINE | ID: mdl-36558890

ABSTRACT

Lyssavirus rabies (RABV) is an RNA virus and, therefore, is subject to mutations due to low RNA polymerase replication fidelity, forming a population structure known as a viral quasispecies, which is the core of RNA viruses' adaptive strategy. Under new microenvironmental conditions, the fittest populations are selected, and the study of this process on the molecular level can help determine molecular signatures related to virulence. Our aim was to survey gene signatures on nucleoprotein and glycoprotein genes that might be involved in virulence modulation during the in vitro evolution of RABV lineages after serial passages in a neuronal cell system with or without the presence of neutralizing antibodies based on replicative fitness, in vivo neurotropism and protein structure and dynamics. The experiments revealed that amino acids at positions 186 and 188 of the glycoprotein are virulence factors of Lyssavirus rabies, and site 186 specifically might allow the attachment to heparan as a secondary cell receptor, while polymorphism at position 333 might allow the selection of escape mutants under suboptimal neutralizing antibodies titers.

3.
Rev. enferm. UFPE on line ; 15(1): [1-21], jan. 2021. ilus, tab
Article in Portuguese | BDENF - Nursing | ID: biblio-1145793

ABSTRACT

Objetivo: analisar a produção científica acerca dos cuidados de Enfermagem na mulher em situação de pós-abortamento Método: trata-se de um estudo bibliográfico, descritivo, tipo revisão integrativa. Realizou-se a busca nas bases de dados LILACS, BDENF, CINAHL e Biblioteca Virtual SCIELO, utilizando-se os descritores "Enfermagem", "cuidados de Enfermagem" e "aborto" em artigos publicados entre 2008 e 2017. Aplicaram-se os seguintes critérios de inclusão: artigos em inglês, espanhol ou português e disponíveis na íntegra. Excluíram-se as publicações que não contemplavam o objeto de estudo, duplicadas e revisões de literatura. Avaliaram-se os estudos a partir da análise crítica, sendo observados os aspectos metodológicos e as convergências entre os resultados encontrados, possibilitando a elaboração de três categorias temáticas, apresentadas nos resultados e discussão. Resultados: selecionaram-se sete publicações que deram origem a três categorias: Humanização e integralidade no cuidado de Enfermagem a mulheres em situação de abortamento, Assistência de Enfermagem a mulheres em situação de abortamento e Riscos inerentes à mulher em pós-abortamento. Conclusão: entende-se que a produção científica sinaliza a necessidade da qualificação profissional e de uma atuação ética. Acredita-se que os resultados possam instrumentalizar a equipe de Enfermagem nos cuidados prestados a mulheres em situação de pós-abortamento.(AU)


Objective: to analyze the scientific production about the nursing care of women in post abortion situations Method: it is a bibliographic, descriptive, integrative review type study. The LILACS, BDENF, CINAHL and SCIELO Virtual Library databases were searched using the descriptors "Nursing", "nursing care" and "abortion" in articles published between 2008 and 2017. The following inclusion criteria were applied: articles in English, Spanish or Portuguese and available in their entirety. Publications that did not include the study object, duplicates and literature reviews were excluded. The studies were evaluated from the critical analysis, and the methodological aspects and convergences between the results were observed, allowing the elaboration of three thematic categories, presented in the results and discussion. Results: seven publications were selected which gave rise to three categories: Humanization and integrality in the Nursing Care of Women in abortion situations, Nursing Care of Women in abortion situations and Risks inherent to women in post-abortion situations. Conclusion: it is understood that scientific production signals the need for professional qualification and ethical action. It is believed that the results can instrumentalize the Nursing team in the care of women in post abortion situations.


Objetivo: analizar la producción científica sobre los cuidados de Enfermería de la mujer en situación postaborto. Método: se trata de un estudio bibliográfico, descriptivo, tipo de revisión integradora. La búsqueda se realizó en las bases de datos LILACS, BDENF, CINAHL y Biblioteca Virtual SCIELO, utilizando los descriptores "Enfermería", "atención de Enfermería" y "aborto" en los artículos publicados entre 2008 y 2017. Se aplicaron los siguientes criterios de inclusión: artículos en inglés, español o portugués y disponibles en su totalidad. Se excluyeron las publicaciones que no incluyeron el objeto de estudio, duplicados y revisiones de la literatura. Los estudios fueron evaluados en base al análisis crítico, observando los aspectos metodológicos y las convergencias entre los resultados encontrados, permitiendo la elaboración de tres categorías temáticas, presentadas en los resultados y discusión. Resultados: se seleccionaron siete publicaciones que dieron lugar a tres categorías: Humanización e integralidad en la atención de Enfermería a mujeres en situación de aborto, Atención de Enfermería a mujeres en situación de aborto y Riesgos inherentes a las mujeres en postaborto. Conclusión: se entiende que la producción científica señala la necesidad de calificación profesional y desempeño ético. Se cree que los resultados pueden instrumentalizar al equipo de Enfermería en la atención brindada a las mujeres en situaciones postaborto.(AU)


Subject(s)
Humans , Female , Pregnancy , Women's Health , Comprehensive Health Care , Abortion , Humanization of Assistance , Nursing Care , Epidemiology, Descriptive , LILACS
4.
J Infect Dev Ctries ; 14(7): 772-780, 2020 07 31.
Article in English | MEDLINE | ID: mdl-32794469

ABSTRACT

INTRODUCTION: Staphylococci are the most important agents associated with bovine mastitis. This study aimed at characterizing resistance factors to antimicrobials in Staphylococcus spp. isolated from the milk of cows with subclinical mastitis. METHODOLOGY: In vitro resistance of 243 Staphylococcus spp. isolates to antimicrobials commonly used in clinical practice was evaluated. The detection and expression of genes encoding resistance mecA (gene encoding penicillin binding protein 2a) mecALGA251 (mecA homologue), blaZ (gene encoding penicillin resistance), femA and femB (genes encoding essential factors - A and B - for the expression of methicillin resistance) and aacA-aphD (gene encoding for a bifunctional enzyme that confers resistance to gentamicin) using PCR and RT-PCR was investigated. RESULTS: One or more genes encoding resistance to different antimicrobials were detected in 184 Staphylococcus spp. SAMPLES: The femA and femB genes were the most frequent. Regarding the variables' detection (N = number of strains) and expression (% of strains), the following results were obtained: blaZ (N = 40 - 82.5%), femA (N = 147 - 47.6%), aacAaphD (N = 30 - 43.3%), femB (N = 138 - 29.7%), mecA (N = 33 - 27.3%), mecALGA251 (N = 01 - 0.0%). There was a higher occurrence of phenotypic resistant strains for amoxicillin, ampicillin and penicillin in isolates positive for detection and/or expression of blaZ gene when compared with the other genes. CONCLUSIONS: The present study provides new information on genotypic traits of Staphylococcus isolates from bovine subclinical mastitis especially regarding the evaluation of expression of genes associated with antimicrobial resistance in Staphylococcus spp. using molecular tools.


Subject(s)
Drug Resistance, Bacterial/genetics , Mastitis, Bovine/microbiology , Milk/microbiology , Staphylococcal Infections/veterinary , Staphylococcus/drug effects , Staphylococcus/genetics , Animals , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Brazil , Cattle , DNA, Bacterial , Female , Methicillin Resistance , Microbial Sensitivity Tests , Penicillin Resistance , Penicillin-Binding Proteins/genetics , Penicillin-Binding Proteins/metabolism , Staphylococcal Infections/drug therapy , Staphylococcal Infections/microbiology , Staphylococcus/isolation & purification
5.
Acta Trop ; 191: 212-216, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30639452

ABSTRACT

The present study aimed to detect the most prevalent serogroups and circulating Leptospira species in cows from Brazilian Amazon. Samples of blood serum, urine and kidney of 208 animals were collected at a municipal slaughterhouse in the Baixo Tocantins region of Pará State, Northern Brazil. The tests used were microscopic agglutination test (MAT), bacteriological isolation, polymerase chain reaction (PCR) and DNA sequencing. The frequency of MAT-reactive cows was 46.6% (97/208) with titers ranging from 100 to 3200, being Sejroe serogroup the most prevalent. There was no Leptospira isolation, but the DNA of bacterium was detected in 5.8% (12/208) of the kidney and in 14.9% (31/208) of the urine samples. DNA sequencing was performed directly from PCR products of 30 samples (3 kidneys and 27 urines), with identification of four different species: L. borgpetersenii with 56.7% (17/30), followed by L. kirschneri with 13.3% (4/30), L. interrogans with 6.7% (2/30), L. santarosai with 3.3% (1/30), and 20.0% (6/30) of samples were identified only at the genus level. These results reveal a diversity and peculiarity for bovine leptospirosis in the Amazon region, mainly due to the low frequency of L. santarosai and more surprising, the presence of L. kirschneri, differently of what is observed in other regions of Brazil.


Subject(s)
Cattle Diseases/genetics , Cattle Diseases/microbiology , Leptospira/genetics , Leptospira/isolation & purification , Leptospirosis/genetics , Leptospirosis/veterinary , Agglutination Tests/veterinary , Animals , Base Sequence , Brazil/epidemiology , Cattle , Female , Leptospirosis/epidemiology , Polymerase Chain Reaction/veterinary , Sequence Analysis, DNA , Serogroup
6.
Vigil. sanit. debate ; 6(4): 86-90, nov.2018.
Article in English | LILACS-Express | LILACS | ID: biblio-966809

ABSTRACT

Introduction: The most frequent demands on microscopic food analysis are allegations of consumers finding macroscopic foreign matter or suspecting the presence of undeclared ingredients on products labels. The byproducts and foreign matters detection are fundamental practice for indirectly verifying the conditions of food production. Objective: This study reports the processes of microscopic and molecular identification (PCR) of a foreign matter found in a meat pie after a consumer complaint, occurred in the city of Itapira, state of São Paulo, Brazil. Method: Two distinct procedures were used to identify foreign matter: macroscopic examination, following FDA standards, and polymerase chain reaction (PCR) technique to identify DNA extracted from foreign materials. Results: The macroscopic analysis identified animal taste buds composing the pie fillings, and the PCR test confirmed that they were of bovine origin. Conclusions: Macroscopic analysis and the PCR test allowed the identification of the type of foreign matters and confirmed its bovine origin, what was enough to characterize it as a fraud by the improper use of inferior tissues in the preparation of ready-to-eat pastry.


Introdução: Uma das mais frequentes demandas de análise microscópica de alimentos são denúncias de consumidores que encontram matéria estranha macroscópica ou suspeitam da presença de ingredientes não declarados no rótulo do produto. A detecção de subprodutos e matérias estranhas é uma prática fundamental para verificar indiretamente a condição de produção de alimentos. Objetivo: Este estudo relata o processo de identificação microscópica e molecular (PCR) de uma matéria estranha encontrada em um pastel de carne após queixa de um consumidor no município de Itapira, estado de SP, Brasil. Método: Dois procedimentos distintos foram empregados para a identificação da matéria estranha: exame macroscópico seguindo padrões estabelecidos pelo FDA e técnica de reação em cadeia da polimerase (PCR) para identificação do DNA extraído da matéria estranha. Resultados: A análise macroscópica identificou a matéria estranha como sendo papilas gustativas de origem animal, e o teste da PCR confirmou que as mesmas eram de origem bovina. Conclusões: A análise macroscópica e o teste da PCR permitiram a identificação do tipo de matéria estranha e confirmação de sua origem bovina, caracterizando a fraude pelo uso indevido de tecidos inferiores na preparação de pastéis prontos para consumo.

7.
Braz. j. microbiol ; 49(2): 336-346, Apr.-June 2018. tab, graf
Article in English | LILACS | ID: biblio-889223

ABSTRACT

Abstract Equine influenza is one of the major respiratory infectious diseases in horses. An equine influenza virus outbreak was identified in vaccinated and unvaccinated horses in a veterinary school hospital in São Paulo, SP, Brazil, in September 2015. The twelve equine influenza viruses isolated belonged to Florida Clade 1. The hemagglutinin and neuraminidase amino acid sequences were compared with the recent isolates from North and South America and the World Organisation for Animal Health recommended Florida Clade 1 vaccine strain. The hemagglutinin amino acid sequences had nine substitutions, compared with the vaccine strain. Two of them were in antigenic site A (A138S and G142R), one in antigenic site E (R62K) and another not in antigenic site (K304E). The four substitutions changed the hydrophobicity of hemagglutinin. Three distinct genetic variants were identified during the outbreak. Eleven variants were found in four quasispecies, which suggests the equine influenza virus evolved during the outbreak. The use of an out of date vaccine strain or updated vaccines without the production of protective antibody titers might be the major contributing factors on virus dissemination during this outbreak.


Subject(s)
Animals , Genetic Variation , Disease Outbreaks , Orthomyxoviridae Infections/veterinary , Evolution, Molecular , Influenza A Virus, H3N8 Subtype/isolation & purification , Horse Diseases/epidemiology , Horse Diseases/virology , Orthomyxoviridae , Viral Proteins/genetics , Brazil/epidemiology , Sequence Analysis, DNA , Orthomyxoviridae Infections/epidemiology , Orthomyxoviridae Infections/virology , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Amino Acid Substitution , Influenza A Virus, H3N8 Subtype/classification , Influenza A Virus, H3N8 Subtype/genetics , Genotype , Horses , Hospitals, Animal , Neuraminidase/genetics
8.
Braz J Microbiol ; 49(2): 336-346, 2018.
Article in English | MEDLINE | ID: mdl-29100932

ABSTRACT

Equine influenza is one of the major respiratory infectious diseases in horses. An equine influenza virus outbreak was identified in vaccinated and unvaccinated horses in a veterinary school hospital in São Paulo, SP, Brazil, in September 2015. The twelve equine influenza viruses isolated belonged to Florida Clade 1. The hemagglutinin and neuraminidase amino acid sequences were compared with the recent isolates from North and South America and the World Organisation for Animal Health recommended Florida Clade 1 vaccine strain. The hemagglutinin amino acid sequences had nine substitutions, compared with the vaccine strain. Two of them were in antigenic site A (A138S and G142R), one in antigenic site E (R62K) and another not in antigenic site (K304E). The four substitutions changed the hydrophobicity of hemagglutinin. Three distinct genetic variants were identified during the outbreak. Eleven variants were found in four quasispecies, which suggests the equine influenza virus evolved during the outbreak. The use of an out of date vaccine strain or updated vaccines without the production of protective antibody titers might be the major contributing factors on virus dissemination during this outbreak.


Subject(s)
Disease Outbreaks , Evolution, Molecular , Genetic Variation , Horse Diseases/epidemiology , Horse Diseases/virology , Influenza A Virus, H3N8 Subtype/isolation & purification , Orthomyxoviridae Infections/veterinary , Amino Acid Substitution , Animals , Brazil/epidemiology , Genotype , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Horses , Hospitals, Animal , Influenza A Virus, H3N8 Subtype/classification , Influenza A Virus, H3N8 Subtype/genetics , Neuraminidase/genetics , Orthomyxoviridae , Orthomyxoviridae Infections/epidemiology , Orthomyxoviridae Infections/virology , Sequence Analysis, DNA , Viral Proteins/genetics
9.
Braz. J. Vet. Res. Anim. Sci. (Online) ; 54(1): 48-53, 2017. tab.
Article in English | LILACS, VETINDEX | ID: biblio-846509

ABSTRACT

Canine coronavirus (CCoV) exists in types I and II and infects dogs leading mainly to enteritis, though type II has already been associated with generalized and highly lethal infection. A CCoV-type II inactivated vaccine produced in A72 canine cells is available worldwide and largely used, though the molecular stability after serial passages of vaccine seeds is unknown. This article reports the evolution of the CCoV-II vaccine strain 1-71 in A72 cells based on partial S gene sequencing, showing the predominance of neutral evolution and the occurrence of four sites under purifying selection. Thus, cell-adapted strains of CCoV-II may be genetically stable after serial passages in a same cell line due to a stable virus-host relationship.(AU)


O Coronavírus canino (CCoV) ocorre como tipos I e II e infecta cães, levando principalmente a enterite, apesar do tipo II já ter sido associado à infecção generalizada e altamente letal. Uma vacina de CCoV-II inativada produzida em células caninas A72 é disponível mundialmente e largamente utilizada, apesar da sua estabilidade molecular após passagens seriadas de sementes vacinais ser desconhecida. Este artigo relata a evolução da amostra vacinal CCoC-II 1-71 em células A-72 com base em sequenciamento parcial do gene S, demonstrando predomínio de evolução neutra e a ocorrência de quaro sítios sob seleção purificante. Portanto, amostras de CCoV-II adaptadas a cultivos celulares podem ser estáveis geneticamente após passagens seriadas em uma mesma linhagem celular devido à existência de uma relação estável vírus-hospedeiro.(AU)


Subject(s)
Coronavirus, Canine , Vaccines, Inactivated/analysis , Serial Passage , Vaccines/history
10.
Rev Bras Parasitol Vet ; 25(2): 187-95, 2016 Jun 07.
Article in English | MEDLINE | ID: mdl-27334819

ABSTRACT

Giardia duodenalis is divided into eight assemblages (named A to H). Isolates of assemblage A are divided into four sub-assemblages (AI, AII, AIII and AIV). While isolates of sub-assemblage AII are almost exclusively detected in human hosts, isolates of assemblage B are encountered in a multitude of animal hosts and humans. Here, we isolated single cysts of G. duodenalis from a human stool sample and found that one of them had overlaps of assemblage AII and B alleles and an unexpectedly high number of variants of the beta-giardin (Bg) and GLORF-C4 (OrfC4) alleles. In addition, one of the Bg alleles of that cyst had a fragment of sub-assemblage AII interspersed with fragments of assemblage B, thus indicating that this allele may be a recombinant between sequences A and B. Our results are unprecedented and put a check on the statement that different assemblages of G. duodenalis represent species with different host specificities.


Subject(s)
Alleles , Cysts/genetics , Cytoskeletal Proteins/genetics , Genetic Carrier Screening , Giardia lamblia/genetics , Protozoan Proteins/genetics , Animals , Genetic Carrier Screening/veterinary , Genotype , Giardia lamblia/classification
11.
Rev. bras. parasitol. vet ; 25(2): 187-195, graf
Article in English | LILACS | ID: lil-785166

ABSTRACT

Abstract Giardia duodenalis is divided into eight assemblages (named A to H). Isolates of assemblage A are divided into four sub-assemblages (AI, AII, AIII and AIV). While isolates of sub-assemblage AII are almost exclusively detected in human hosts, isolates of assemblage B are encountered in a multitude of animal hosts and humans. Here, we isolated single cysts of G. duodenalis from a human stool sample and found that one of them had overlaps of assemblage AII and B alleles and an unexpectedly high number of variants of the beta-giardin (Bg) and GLORF-C4 (OrfC4) alleles. In addition, one of the Bg alleles of that cyst had a fragment of sub-assemblage AII interspersed with fragments of assemblage B, thus indicating that this allele may be a recombinant between sequences A and B. Our results are unprecedented and put a check on the statement that different assemblages of G. duodenalis represent species with different host specificities.


Resumo A espécie Giardia duodenalis é dividida em oito grupos (nomeados de A a H). Isolados do grupo A são divididos em quatro subgrupos (AI, AII, AIII and AIV). Enquanto isolados do subgrupo AII são detectados quase exclusivamente em hospedeiros humanos, isolados do subgrupo B são encontrados em uma grande variedade de hospedeiros entre animais e humanos. Neste trabalho, foi constatado que, dentre diversos cistos individualizados de G. duodenalis provenientes de fezes de origem humana, um cisto continha os alelos AII e B e um número inesperado de variantes de alelos codificadores de beta giardina e GLORF-C4. Ainda, um dos alelos beta giardina desse cisto possuía fragmentos AII intercalando um fragmento B, indicando que esse alelo pode ser um recombinante entre alelos AII e B. Os resultados aqui apresentados são inéditos e colocam em dúvida o conceito atual de que os diferentes grupos de G. duodenalis representam espécies distintas com diferentes graus de especificidade por hospedeiros.


Subject(s)
Animals , Protozoan Proteins/genetics , Giardia lamblia/genetics , Cysts/genetics , Cytoskeletal Proteins/genetics , Alleles , Genetic Carrier Screening/veterinary , Giardia lamblia/classification , Genotype
12.
Exp Parasitol ; 157: 84-7, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26172406

ABSTRACT

Giardia duodenalis is divided into at least eight groups, named assemblages A to H. Assemblages A and B are the only ones able to infect humans and other mammals. The species status for these assemblies is a moot point, but has not gained general acceptance because sexual activity in Giardia is not completely understood. Heterozygosity in G. duodenalis can be detected through simultaneous identification of multiple loci in single cysts or trophozoites. In this paper, we describe a technique that enables simultaneous detection of fragments from four genes from single cysts of G. duodenalis recovered from stool samples. Each cyst from a fecal sample of human origin was separated, the DNA was extracted and amplified by means of multiplex PCR directed to four genes and the multiplex PCR product was further re-amplified using four single PCR (one for each gene). The following loci were detected: beta giardin (bg), GLORF-C4 (orfC4), triose phosphate isomerase (tpi) and glutamate dehydrogenase (gdh). This procedure should make it possible to investigate multiple genes from a single cyst of G. duodenalis assemblage A or B.


Subject(s)
DNA, Protozoan/genetics , DNA, Protozoan/isolation & purification , Giardia lamblia/genetics , Feces/parasitology , Giardiasis/parasitology , Heterozygote , Humans , Micromanipulation , Multilocus Sequence Typing , Multiplex Polymerase Chain Reaction , Polymerase Chain Reaction
13.
J Wildl Dis ; 50(2): 205-9, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24484498

ABSTRACT

Peccaries and pigs, Tayassuidae and Suidae respectively, diverged approximately one million years ago from a common ancestor. Because these families share some pathogens, peccaries can act as reservoirs of infectious pathogens for domestic and wild swine. We evaluated the presence of swine infectious agents in the spleen and lung tissues of white-lipped peccaries (WLP; Tayassu pecari) and collared peccaries (CP; Pecari tajacu) in Brazil. Samples from 10 adult CP and three WLP, which had been hunted by locals or hit by motor vehicles, were obtained from two free-ranging Brazilian populations. The samples were tested by PCR for Mycoplasma hyopneumoniae, Bordetella bronchiseptica, Pasteurella multocida, porcine circovirus 2 (PCV2), Suid herpesvirus 1 (SuHV-1), and porcine parvovirus (PPV). Positive samples were sequenced. Both species were negative for PPV and B. bronchiseptica and positive for PCV2 and SuHV-1. The lungs of two animals were positive for M. hyopneumoniae and P. multocida. This report is the first demonstration of PCV2 and SuHV-1 swine viruses and of M. hyopneumoniae and P. multocida bacteria in peccaries. One factor contributing to this detection was access to tissue samples, which is uncommon. The role of these infectious agents in peccaries is unknown and further epidemiologic studies should be performed. This study identified several infectious agents in peccaries and highlighted the importance of the tissue type used to detect pathogens.


Subject(s)
Artiodactyla , Bacterial Infections/veterinary , Swine Diseases/microbiology , Swine Diseases/virology , Virus Diseases/veterinary , Animals , Bacterial Infections/epidemiology , Bacterial Infections/microbiology , Brazil/epidemiology , Species Specificity , Swine , Swine Diseases/epidemiology , Virus Diseases/epidemiology , Virus Diseases/virology
14.
Braz. j. vet. res. anim. sci ; 51(2): 122-130, 2014.
Article in English | LILACS | ID: lil-733551

ABSTRACT

Rabies virus samples (n = 17) A1 to A3 exhibit a similar composition and geographic distribution. Diverse composition of remaining groups of N and G gene is attributable to different sequences used in the alignments for each genomic region. Glycoprotein amino acid sequence showed molecular markers in sub-lineages A2, A3, A4 and A7. This information provides a better comprehension of molecular epidemiology of rabies, starting with the knowledge of viral lineages circulating in the Brazilian Amazon.


Amostras do vírus da raiva (n = 17) isoladas de bovinos (n = 11), equinos (n = 4) e bubalinos (n = 2) procedentes do Pará (n = 7), Tocantins (n = 6) e Rondônia (n = 4) foram submetidas à técnica de RT-PCR para amplificação parcial dos genes da Nucleoproteína (N) e Glicoproteína (G). As sequências nucleotídicas obtidas foram analisadas pelo método de reconstrução filogenética Neighbor-Joining com o modelo evolutivo Kimura 2-parâmetros. Todas as 17 amostras pertenceram ao cluster A, que se encontrou na linhagem associado com morcego hematófago Desmodus rotundus. A análise filogenética baseada nos genes N e G, sugere a presença de cinco sublinhagens (A1-A5) e sete sublinhagens (A1-A7), respectivamente. Quando se compara ambas as filogenias, as sublinhagens A1 até A3 mostram composição e distribuição geográfica concordante, já a diversidade observada na composição das sublinhagens restantes é atribuída ao uso de sequências de diferentes alinhamentos. A glicoproteína mostrou marcadores moleculares nas sublinhagens A2, A3, A4 e A7, o que fornece elementos para melhor compreensão da epidemiologia molecular da raiva das linhagens circulantes na Amazônia Brasileira.


Subject(s)
Animals , Herbivory , Nucleoproteins/analysis , Phylogeny , Rabies/pathology
15.
J Virol Methods ; 169(2): 375-9, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20723564

ABSTRACT

Neonatal calf diarrhea is a multi-etiology syndrome of cattle and direct detection of the two major agents of the syndrome, group A rotavirus and Bovine coronavirus (BCoV) is hampered by their fastidious growth in cell culture. This study aimed at developing a multiplex semi-nested RT-PCR for simultaneous detection of BCoV (N gene) and group A rotavirus (VP1 gene) with the addition of an internal control (mRNA ND5). The assay was tested in 75 bovine feces samples tested previously for rotavirus using PAGE and for BCoV using nested RT-PCR targeted to RdRp gene. Agreement with reference tests was optimal for BCoV (kappa=0.833) and substantial for rotavirus detection (kappa=0.648). the internal control, ND5 mRNA, was detected successfully in all reactions. Results demonstrated that this multiplex semi-nested RT-PCR was effective in the detection of BCoV and rotavirus, with high sensitivity and specificity for simultaneous detection of both viruses at a lower cost, providing an important tool for studies on the etiology of diarrhea in cattle.


Subject(s)
Cattle Diseases/diagnosis , Coronavirus Infections/veterinary , Coronavirus, Bovine/isolation & purification , Reference Standards , Reverse Transcriptase Polymerase Chain Reaction/methods , Rotavirus Infections/veterinary , Rotavirus/isolation & purification , Animals , Cattle , Cattle Diseases/virology , Coronavirus Infections/diagnosis , Coronavirus Infections/virology , Feces/virology , Molecular Sequence Data , Polymerase Chain Reaction/methods , RNA, Viral/genetics , Reverse Transcriptase Polymerase Chain Reaction/standards , Rotavirus Infections/diagnosis , Rotavirus Infections/virology , Sensitivity and Specificity , Sequence Analysis, DNA
16.
Rev. Inst. Med. Trop. Säo Paulo ; 51(6): 341-343, Oct.-Dec. 2009. tab
Article in English | LILACS | ID: lil-539454

ABSTRACT

Cryptosporidium spp. are important cause of enteric disease in humans, but may also infect animals. This study describes the relative frequency of several Cryptosporidium species found in human specimens from HIV infected patients in the São Paulo municipality obtained from January to July 2007. Sequence analysis of the products of nested-PCR based on small subunit rRNA and Cryptosporidium oocyst wall protein coding genes revealed 17 (63.0 percent) isolates of C. hominis, four (14.8 percent) C. parvum, five (18.5 percent) C. felis and one (3.7 percent) C. canis. These findings suggest that, in urban environments of Brazil, the cat adapted C. felis may play a potential role in the zoonotic transmission of cryptosporidiosis whereas the anthroponotic transmission of cryptosporidiosis caused by C. hominis seems to predominate.


Cryptosporidium spp. são importantes causas de doenças entéricas em humanos, mas podem também ser encontrados em animais. O presente estudo descreve a frequência relativa de diversas espécies de Cryptosporidium em amostras de humanos da cidade de São Paulo, Brasil, obtidas de janeiro a julho de 2007. Análises de sequências de produtos de nested PCR direcionadas ao genes codificadores da menor unidade ribosomal e da proteina de parede de oocistos revelaram 17 (63,0 por cento) isolados de C. hominis, quatro (14,8 por cento) C. parvum, cinco (18,5 por cento) C. felis, e um (3,7 por cento) C. canis. Estes resultados sugerem que, em ambientes urbanos no Brasil, o genótipo adaptado ao gato pode desempenhar potencial papel na transmissão zoonótica de criptosporidiose, enquanto a transmissão antroponótica da criptosporidiose causada pelo C. hominis parece predominar.


Subject(s)
Animals , Cats , Dogs , Humans , Cryptosporidiosis/parasitology , Cryptosporidium/genetics , HIV Infections/parasitology , Cryptosporidiosis/transmission , Cryptosporidium/classification , Cryptosporidium/isolation & purification , Feces/parasitology , Genotype , Polymerase Chain Reaction , RNA, Protozoan/genetics , RNA, Ribosomal/genetics
17.
Rev Inst Med Trop Sao Paulo ; 51(6): 341-3, 2009.
Article in English | MEDLINE | ID: mdl-20209270

ABSTRACT

Cryptosporidium spp. are important cause of enteric disease in humans, but may also infect animals. This study describes the relative frequency of several Cryptosporidium species found in human specimens from HIV infected patients in the São Paulo municipality obtained from January to July 2007. Sequence analysis of the products of nested-PCR based on small subunit rRNA and Cryptosporidium oocyst wall protein coding genes revealed 17 (63.0%) isolates of C. hominis, four (14.8%) C. parvum, five (18.5%) C. felis and one (3.7%) C. canis. These findings suggest that, in urban environments of Brazil, the cat adapted C. felis may play a potential role in the zoonotic transmission of cryptosporidiosis whereas the anthroponotic transmission of cryptosporidiosis caused by C. hominis seems to predominate.


Subject(s)
Cryptosporidiosis/parasitology , Cryptosporidium/genetics , HIV Infections/parasitology , Animals , Cats , Cryptosporidiosis/transmission , Cryptosporidium/classification , Cryptosporidium/isolation & purification , Dogs , Feces/parasitology , Genotype , Humans , Polymerase Chain Reaction , RNA, Protozoan/genetics , RNA, Ribosomal/genetics
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