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1.
Wellcome Open Res ; 9: 78, 2024.
Article in English | MEDLINE | ID: mdl-38894705

ABSTRACT

We present a genome assembly from an individual male Syrphus vitripennis (a hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 388.8 megabases in span. Most of the assembly is scaffolded into 5 chromosomal pseudomolecules, including the XY sex chromosome. The mitochondrial genome has also been assembled and is 18.33 kilobases in length.

2.
Wellcome Open Res ; 9: 67, 2024.
Article in English | MEDLINE | ID: mdl-38911901

ABSTRACT

We present a genome assembly from an individual female Merodon equestris (hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 873.0 megabases in span. Most of the assembly is scaffolded into 6 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.95 kilobases in length.

3.
Wellcome Open Res ; 9: 69, 2024.
Article in English | MEDLINE | ID: mdl-38813464

ABSTRACT

We present a genome assembly from an individual female Eristalinus aeneus (a hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 495.4 megabases in span. Most of the assembly is scaffolded into 6 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.97 kilobases in length.

4.
Wellcome Open Res ; 8: 61, 2023.
Article in English | MEDLINE | ID: mdl-38037558

ABSTRACT

We present a genome assembly from an individual male Amblyteles armatorius (an ichneumonid wasp; Arthropoda; Insecta; Hymenoptera; Ichneumonidae). The genome sequence is 216 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.6 kilobases in length.

5.
Wellcome Open Res ; 8: 143, 2023.
Article in English | MEDLINE | ID: mdl-37954924

ABSTRACT

We present a genome assembly from an individual female Bombus pratorum (the Early Bumblebee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 285.1 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 21.5 kilobases in length. Gene annotation of this assembly on Ensembl identified 13,746 protein coding genes.

6.
Wellcome Open Res ; 8: 30, 2023.
Article in English | MEDLINE | ID: mdl-37915954

ABSTRACT

We present a genome assembly from an individual male Pherbina coryleti (snail-killing fly; Arthropoda; Insecta; Diptera; Sciomyzidae). The genome sequence is 863 megabases in span. Most of the assembly is scaffolded into six chromosomal pseudomolecules, including the assembled X sex chromosome. The mitochondrial genome has also been assembled and is 20.9 kilobases in length. Gene annotation of this assembly on Ensembl identified 32,619 protein coding genes.

7.
Wellcome Open Res ; 8: 377, 2023.
Article in English | MEDLINE | ID: mdl-37981983

ABSTRACT

We present a genome assembly from an individual male Cheilosia variabilis (the Figwort Cheilosia; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 414.7 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 16.77 kilobases in length.

8.
Wellcome Open Res ; 8: 112, 2023.
Article in English | MEDLINE | ID: mdl-37808390

ABSTRACT

We present a genome assembly from an individual female Eupeodes corollae (the Vagrant Hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 648.2 megabases in span. Most of the assembly is scaffolded into four chromosomal pseudomolecules, including with the X sex chromosome. The mitochondrial genome has also been assembled and is 18.3 kilobases in length.

9.
Wellcome Open Res ; 8: 67, 2023.
Article in English | MEDLINE | ID: mdl-37766849

ABSTRACT

We present a genome assembly from an individual male Protocalliphora azurea (a bird blowfly; Arthropoda; Insecta; Diptera; Calliphoridae). The genome sequence is 874 megabases in span. Most of the assembly is scaffolded into seven chromosomal pseudomolecules, including the assembled X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 15.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 11,936 protein coding genes.

10.
Wellcome Open Res ; 8: 142, 2023.
Article in English | MEDLINE | ID: mdl-37621574

ABSTRACT

We present a genome assembly from an individual female Bombus pascuorum (the Common Carder Bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 307.5 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 21.9 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,999 protein coding genes.

11.
Wellcome Open Res ; 8: 123, 2023.
Article in English | MEDLINE | ID: mdl-37408610

ABSTRACT

The Darwin Tree of Life (DToL) project aims to sequence and assemble high-quality genomes from all eukaryote species in Britain and Ireland, with the first phase of the project concentrating on family-level coverage plus species of particular ecological, biomedical or evolutionary interest. We summarise the processes involved in (1) assessing the UK arthropod fauna and the status of individual species on UK lists; (2) prioritising and collecting species for initial genome sequencing; (3) handling methods to ensure that high-quality genomic DNA is preserved; and (4) compiling standard operating procedures for processing specimens for genome sequencing, identification verification and voucher specimen curation. We briefly explore some lessons learned from the pilot phase of DToL and the impact of the Covid-19 pandemic.

12.
Wellcome Open Res ; 8: 148, 2023.
Article in English | MEDLINE | ID: mdl-37275324

ABSTRACT

We present a genome assembly from an individual male Nephrotoma flavescens (a Tiger Cranefly; Arthropoda; Insecta; Diptera; Tipulidae). The genome sequence is 1,051.3 megabases in span. Most of the assembly is scaffolded into four chromosomal pseudomolecules, including a partial X sex chromosome. The mitochondrial genome has also been assembled and is 18.9 kilobases in length. Gene annotation of this assembly on Ensembl identified 11,276 protein coding genes.

13.
Wellcome Open Res ; 8: 478, 2023.
Article in English | MEDLINE | ID: mdl-38549709

ABSTRACT

We present a genome assembly from an individual male Cantharis rufa (soldier beetle; Arthropoda; Insecta; Coleoptera; Cantharidae). The genome sequence is 355.3 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 17.34 kilobases in length.

14.
Wellcome Open Res ; 8: 467, 2023.
Article in English | MEDLINE | ID: mdl-38680651

ABSTRACT

We present a genome assembly from an individual female Cryptocephalus moraei (a leaf beetle; Arthropoda; Insecta; Coleoptera; Chrysomelidae). The genome sequence is 500.5 megabases in span. Most of the assembly is scaffolded into 15 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 15.68 kilobases in length.

15.
Wellcome Open Res ; 8: 240, 2023.
Article in English | MEDLINE | ID: mdl-38798995

ABSTRACT

We present a genome assembly from an individual female Nemotelus nigrinus (a soldierfly; Arthropoda; Insecta; Diptera; Stratiomyidae). The genome sequence is 722.2 megabases in span. Most of the assembly is scaffolded into 5 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 18.94 kilobases in length.

16.
Wellcome Open Res ; 8: 330, 2023.
Article in English | MEDLINE | ID: mdl-38779051

ABSTRACT

We present a genome assembly from an individual female Stomorhina lunata (the Locust Fly; Arthropoda; Insecta; Diptera; Rhiniidae). The genome sequence is 728.1 megabases in span. Most of the assembly is scaffolded into 6 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 16.49 kilobases in length. Gene annotation of this assembly on Ensembl identified 18,358 protein coding genes.

17.
Wellcome Open Res ; 8: 501, 2023.
Article in English | MEDLINE | ID: mdl-38434741

ABSTRACT

We present a genome assembly from an individual male Lagria hirta (darkling beetle; Arthropoda; Insecta; Coleoptera; Tenebrionidae). The genome sequence is 336.8 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 16.12 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,850protein coding genes.

18.
Wellcome Open Res ; 8: 161, 2023.
Article in English | MEDLINE | ID: mdl-38283327

ABSTRACT

We present a genome assembly from an individual female Bombus terrestris (the Buff-tailed Bumblebee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 393.0 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 24.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 14,435 protein coding genes.

19.
Wellcome Open Res ; 8: 93, 2023.
Article in English | MEDLINE | ID: mdl-38173563

ABSTRACT

We present a genome assembly from an individual male Calliphora vomitoria (a bluebottle; Arthropoda; Insecta; Diptera; Calliphoridae). The genome sequence is 708 megabases in span. Most of the assembly is scaffolded into six chromosomal pseudomolecules, including the assembled X sex chromosome. The mitochondrial genome has also been assembled and is 16.2 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,917 protein coding genes.

20.
Wellcome Open Res ; 8: 247, 2023.
Article in English | MEDLINE | ID: mdl-38196772

ABSTRACT

We present a genome assembly from an individual female Nebria salina (a carabid beetle; Arthropoda; Insecta; Coleoptera; Carabidae). The genome sequence is 256.7 megabases in span. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules, including the assembled X sex chromosome. The mitochondrial genome has also been assembled and is 24.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,671 protein coding genes.

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