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1.
Learn Behav ; 47(1): 38-46, 2019 03.
Article in English | MEDLINE | ID: mdl-29508155

ABSTRACT

Across three experiments, we examined the cuing properties of metric (distance and direction) and nonmetric (lighting) cues in different tasks. In Experiment 1, rats were trained on a response problem in a T-maze, followed by four reversals. Rats that experienced a change in maze orientation (Direction group) or a change in the length of the start arm (Distance group) across reversals showed facilitation of reversal learning relative to a group that experienced changes in room lighting across reversals. In Experiment 2, rats learned a discrimination task more readily when distance or direction cues were used than when light cues were used as the discriminative stimuli. In Experiment 3, performance on a go/no-go task was equivalent using both direction and lighting cues. The successful use of both metric and nonmetric cues in the go/no-go task indicates that rats are sensitive to both types of cues and that the usefulness of different cues is dependent on the nature of the task.


Subject(s)
Distance Perception , Lighting , Reversal Learning , Space Perception , Animals , Choice Behavior , Cues , Discrimination Learning , Male , Maze Learning , Orientation , Rats
2.
Behav Neurosci ; 115(2): 341-57, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11345959

ABSTRACT

This study compared rats with dorsal striatal, ventrolateral prefrontal cortical, and combined lesions of the hippocampus and amygdala to sham controls on a conditional discrimination task in which contextual cues modulated a taste aversion. All groups were able to acquire this occasion setting task. The 2nd experiment functionally minimized the stimulus-response component of the paradigm, creating a "tasteless" form of occasion setting. Rats with pretraining lesions of the hippocampus and amygdala were impaired compared with shams on the acquisition of this tasteless occasion setting task. Rats with posttraining combined lesions did not retain the ability to perform the tasteless occasion setting task learned preoperatively. Rats with selective lesions of either the hippocampus or the amygdala alone were not impaired in the acquisition of the tasteless occasion setting task. The findings suggest that this occasion setting task may be learned by several redundant neural systems.


Subject(s)
Amygdala/physiology , Association Learning/physiology , Avoidance Learning/physiology , Conditioning, Classical/physiology , Hippocampus/physiology , Taste/physiology , Animals , Brain Mapping , Corpus Striatum/physiology , Escape Reaction/physiology , Male , Maze Learning/physiology , Mental Recall/physiology , Nerve Net/physiology , Orientation/physiology , Prefrontal Cortex/physiology , Rats , Rats, Wistar
3.
Neurobiol Learn Mem ; 75(3): 303-9, 2001 May.
Article in English | MEDLINE | ID: mdl-11300736

ABSTRACT

Three experiments were carried out to investigate the influence of object relocation on object marking in an open field by hooded and albino rats. Object marking was reelicited when an object was moved to a new location in the second half of an open field test. Control conditions revealed that an object briefly moved and returned to the original location elicited no more marking than a stationary object. The higher level of marking of the relocated object suggests that object marking may provide an index of spatial knowledge. The implication of spatial knowledge in controlling marking behavior is congruent with observations that rats with hippocampal damage show increased marking.


Subject(s)
Behavior, Animal/physiology , Fire Extinguishing Systems , Hippocampus/physiopathology , Motion Perception/physiology , Motion , Spatial Behavior/physiology , Animals , Male , Rats , Rats, Long-Evans
4.
Behav Neurosci ; 115(1): 220-8, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11256445

ABSTRACT

The ability of rats to return to the start location was examined with a 4-arm radial water maze. The task required rats to find 2 hidden platforms in sequence. Rats were released from 1 of 3 arms and there was a platform located in the fourth arm. Once a rat found this platform, a 2nd platform was raised in another location, which was either the start location, for 1 group, or another fixed location, for a control group. Across 3 experiments, all rats learned the location of the 1st fixed platform in 80 to 120 trials. However, rats had difficulty finding a 2nd platform if it was at the start location. Control groups revealed that rats could learn 2 platform locations and that the difficulty in learning to return to the start location did not seem to be attributable to its aversive nature. In separate groups, exposure to the start location was increased by starting the rats from an initially stable platform. Rats still did not readily learn to return to the start location. The authors suggest that start location, when varied, cannot readily be used to define the location of a hidden platform.


Subject(s)
Cognition Disorders/diagnosis , Maze Learning/physiology , Animals , Behavior, Animal/physiology , Random Allocation , Rats , Rats, Sprague-Dawley , Spatial Behavior/physiology
5.
J Exp Zool ; 286(4): 329-42, 2000 Mar 01.
Article in English | MEDLINE | ID: mdl-10684556

ABSTRACT

The crustacean integument consists of the exoskeleton and underlying epithelium and associated tissues. The epithelium, which is composed of a single layer of cells, is responsible for the cyclical breakdown and synthesis of the exoskeleton associated with molting (ecdysis). During premolt (proecdysis) the epithelial cells lengthen and secrete the two outermost layers (epicuticle and exocuticle) of the new exoskeleton while partially degrading the two innermost layers (endocuticle and membranous layer) of the overlying old exoskeleton. This increased cellular activity is associated with increased protein synthesis and a change in cell shape from cuboidal to columnar. The cytoskeleton, composed of microfilaments (actin) and microtubules (tubulin), plays important roles in the intracellular organization and motility of eukaryotic cells. Immunoblot analysis shows that the land crab exoskeleton contains actin, tubulin, and actin-related proteins (Varadaraj et al. 1996. Gene 171:177-184). In the present study, immunocytochemistry of land crab and lobster integument showed that both proteins were localized in various cell types, including epithelia, connective tissue, tendinal cells, and blood vessels. Muscle immunostained for actin and myosin, but not for tubulin. The membranous layer of land crab (the other layers of the exoskeleton were not examined) and membranous layer and endocuticle of lobster also reacted specifically with anti-beta-actin and anti-alpha-tubulin monoclonal antibodies, but not with an anti-myosin heavy chain antibody. During proecdysis immunolabeling of the membranous layer decreased probably due to protein degradation. The staining intensity for actin and tubulin in the proecdysial epithelium was similar to that in the intermolt (anecdysial) epithelium, suggesting that there was a net accumulation of both proteins proportional to the increase in cellular volume. These results support the previous biochemical analyses and, more specifically, localize actin and tubulin in exoskeletal structures, suggesting that they may serve both intracellular and extracellular functions in crustaceans. J. Exp. Zool. 286:329-342, 2000.


Subject(s)
Actins/chemistry , Brachyura/chemistry , Nephropidae/chemistry , Tubulin/chemistry , Actins/analysis , Actins/immunology , Animals , Brachyura/immunology , Immunohistochemistry , Molting , Nephropidae/immunology , Tubulin/analysis , Tubulin/immunology
6.
J Exp Zool ; 278(2): 63-77, 1997 Jun 01.
Article in English | MEDLINE | ID: mdl-9143139

ABSTRACT

Four alpha-tubulin isoforms recovered from a cDNA library from regenerating limb buds of the Bermuda land crab Gecarcinus lateralis have been characterized. Two clones (alpha 1 and alpha 2) contained complete coding sequences with start and stop codons; the other two clones were partial, lacking 5' ends. The four isoforms showed high homology in their coding sequences but rather low homology in their non-coding regions. Identity between the nucleotide sequences of alpha 1 and alpha 2 was 83.4%; between their predicted amino acid sequences it was 88.9%. The inferred number of amino acid residues for both alpha 1 and alpha 2 was 451, and their calculated molecular weights were 58.29 and 58.45 kDa, respectively. The greatest divergence in the predicted crab alpha-tubulin proteins occurred near the carboxy terminus, as in alpha-tubulins of other organisms. When compared with other species; nucleotide sequences of all four clones showed highest homology to alpha-tubulin genes of an insect (Drosophila melanogaster), while their predicted amino acid sequences were most highly homologous to an alpha-tubulin of a mammal (Rattus norvegicus). Southern blots revealed a total of five to seven alpha-tubulin genes encoded in the G. lateralis genome. Northern blots showed single bands of approximately 2.2 kb with an alpha 1-tubulin probe and 1.9 kb with an alpha 2-tubulin probe. mRNA levels of both tubulin isoforms appeared to be independently regulated at different stages of the intermolt cycle in both epidermis and limb buds. Western blots of 1D gels of proteins from epidermis, limb buds, or claw muscle showed tissue- and stage-specific changes in tubulin content; similar analyses on blots of 2D gels revealed differences in the number of alpha-tubulin isoforms that were expressed.


Subject(s)
Brachyura/genetics , Tubulin/genetics , Amino Acid Sequence , Animals , Base Sequence , Blotting, Western , DNA Primers/chemistry , DNA, Complementary/genetics , DNA, Complementary/isolation & purification , Electrophoresis, Polyacrylamide Gel , Gene Dosage , Limb Buds , Molecular Sequence Data , Molting/genetics , Rats , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Tubulin/biosynthesis , Tubulin/chemistry
7.
Gene ; 171(2): 177-84, 1996 Jun 01.
Article in English | MEDLINE | ID: mdl-8666269

ABSTRACT

Two actin-encoding cDNAs (act1 and act2) from Gecarcinus lateralis have been sequenced or partially sequenced and the corresponding proteins deduced. The act1 cDNA has a complete ORF; the act2 cDNA lacks most of the 5' end of the coding region. The nucleotide (nt) sequences of both clones are very similar to act sequences of many organisms, the most closely related being from another arthropod, the silkmoth Bombyx mori. The proteins Act1 and Act2 are more similar to vertebrate cytoplasmic actin isoforms (beta-actins) than to vertebrate muscle actins (alpha-actins); they are also more similar to animal actins than to those of fungi or plants. Codon usage is strongly biased toward C or G in the third position. The deduced number of amino acid (aa) residues and calculated Mr for Act1 are 376 aa and 41.94 kDa, respectively. The deduced aa sequence of Act1 is very similar to those of muscle actins of B. mori and Drosophila melanogaster. Southern blots indicated seven to eleven act genes in the crab genome. Northern blots probed with a segment from the 3' UTR of act1 showed a single band of approx. 1.6 kb in poly(A)+ mRNAs from epidermis, limb bud or claw muscle and in total RNAs from ovary and gill, and two bands of approx. 1.6 and 1.8 kb in total RNA from midgut gland. Western blots of one-dimensional gels of proteins from the four layers of the exoskeleton, epidermis, limb buds and claw muscle were probed with a monoclonal Ab against chicken gizzard actin; tissue- and stage-specific changes in actin content were observed. The presence of several isoforms, and differences in their number and occurrence at various stages of the intermolt cycle, were detected on Western blots of two-dimensional gels.


Subject(s)
Actins/genetics , Arabidopsis Proteins , Brachyura/genetics , Molting/genetics , Actins/biosynthesis , Actins/immunology , Amino Acid Sequence , Animals , Base Sequence , Bermuda , Blotting, Southern , Brachyura/chemistry , Brachyura/physiology , Cloning, Molecular , DNA, Complementary/chemistry , DNA, Complementary/genetics , DNA, Complementary/isolation & purification , Gene Expression Regulation, Developmental , Gene Frequency , Molecular Sequence Data , Tissue Distribution , Transcription, Genetic
8.
J Exp Zool ; 273(5): 389-400, 1995 Dec 01.
Article in English | MEDLINE | ID: mdl-8576695

ABSTRACT

As in all decapod Crustacea, the exoskeleton of the land crab Gecarcinus lateralis consists of four layers. Prior electrophoretic analysis of proteins extracted from these layers revealed an abundance of small M(r) proteins with acidic pIs are found in insect cuticle (O'Brien et al. [1991 Biol. Bull., 181:427-441). Further, immunological cross-reactivity between crab exoskeletal proteins and insect cuticular proteins has been demonstrated (Kumari and Skinner [1993] J. Exp. Zool., 265:195-210). Partial amino acid sequences of a number of proteins from the four exoskeletal layers are described here. Proteins were electrophoresed on two-dimensional (2D) gels, transferred to polyvinylidene difluoride (PVDF) membranes, and stained; individual spots were recovered and their N-termini were sequenced. In addition, a 14-kDa protein (pI = 5.4) from membranous layer (ML14) was eluted from 2D gels and digested with endoproteinase Lys-C; N-termini of its constituent peptides were sequenced. The two epicuticular proteins differed from each other. Three proteins with identical electrophoretic mobility isolated from exocuticle, endocuticle, and membranous layer appeared to have identical N termini, while another electrophoretically identical set from the three layers appeared identical with each other but differed in three positions from the first set. Two proteins from the membranous layer both had a mass of 25 kDa but different isoelectric points. Their sequences were indistinguishable from each other but clearly distinct from another membranous layer protein. Another distinct sequence was found in a 14-kDa protein from endocuticle, while a less acidic pair of 14-kDa proteins from endocuticle and membranous layer were quite similar to one another. The three internal peptide fragments from ML14 were distinct, but one had regions similar to the ML14 N terminus. One crab exoskeletal protein sequence was similar to some structural proteins of vertebrates, whereas others had motifs found in insect cuticular proteins. The sequence similarities identified did not account for the antibody cross-reactivity.


Subject(s)
Brachyura/chemistry , Insecta/chemistry , Proteins/chemistry , Amino Acid Sequence , Animals , Electrophoresis, Polyacrylamide Gel , Molecular Sequence Data , Peptides/chemistry
9.
Behav Neurosci ; 108(5): 911-26, 1994 Oct.
Article in English | MEDLINE | ID: mdl-7826514

ABSTRACT

This study examined whether hippocampal or neocortical lesions would impair acquisition of a discrimination task using taste aversions. Rats were injected with a drug 15 min before a flavored solution-lithium chloride pairing. On alternate days, vehicle injections preceded and followed access to the same flavored solution. Rats learned to consume significantly more of the flavored solution after vehicle injections than after drug injections. Rats with hippocampal lesions or neonatal decortication performed as well as controls. Rats with hippocampal lesions also learned a similar task in which visual and textural cues predicted whether access to a flavored solution would be followed by an injection of lithium chloride or vehicle. However, these hippocampal lesions did impair performance in the Morris water task. Occasion setting may involve a type of learning dissociated from both simple classical conditioning and configural learning.


Subject(s)
Avoidance Learning/physiology , Cerebral Cortex/physiology , Conditioning, Classical/physiology , Discrimination Learning/physiology , Hippocampus/physiology , Mental Recall/physiology , Taste/physiology , Animals , Association Learning/physiology , Brain Mapping , Cerebral Decortication , Cues , Escape Reaction/physiology , Food Preferences/physiology , Lithium Chloride/toxicity , Male , Morphine , Orientation/physiology , Pentobarbital , Rats , Rats, Sprague-Dawley , Rats, Wistar , Retention, Psychology/physiology , Transfer, Psychology
10.
Chromosoma ; 103(6): 423-31, 1994 Oct.
Article in English | MEDLINE | ID: mdl-7859563

ABSTRACT

The primary sequence and higher order structures of a G+C-rich satellite DNA of the Bermuda land crab Gecarcinus lateralis have been described previously. The repeat unit of the satellite is approximately 2.1 kb. In exploring a possible function for this satellite, we asked whether it is transcribed. As a probe for transcripts, we used a segment of DNA amplified from a 368 bp EcoRI fragment from the very highly conserved 3' end of the satellite DNA. During polymerase chain reaction (PCR) amplification, the probe was simultaneously either radiolabeled or biotinylated. Tissue- and stage-specific transcripts were observed when blots of poly(A)+ mRNAs recovered from polysomes isolated from crab tissues [including midgut gland (hepatopancreas), limb bud, and claw muscle] were probed with the satellite DNA fragment. The presence of satellite transcripts in polysomal mRNAs is strong evidence that the transcripts had reached the cytoplasm. To corroborate the presence of transcripts in the cytoplasm, we investigated in situ hybridization of satellite probes with RNAs in tissue sections. Biotinylated satellite DNA probes were applied to sections of midgut gland, limb bud papilla, ovary, or testis of anecdysial crabs. Retention of RNAs in tissue sections was improved by UV-irradiation prior to hybridization. Transcripts were abundant in the cytoplasm of all tissues except testis. Sections of crab midgut gland treated with RNase A prior to hybridization and sections of mouse pancreatic tumor served as controls; neither showed any signals with the probe.


Subject(s)
Brachyura/genetics , Cytoplasm/chemistry , DNA, Satellite/genetics , RNA, Messenger/analysis , Animals , Base Composition , Base Sequence , Brachyura/growth & development , Female , Gene Expression Regulation, Developmental , Male , Molecular Sequence Data , Organ Specificity , Polyribosomes/chemistry , Transcription, Genetic
11.
Gene ; 140(1): 1-5, 1994 Mar 11.
Article in English | MEDLINE | ID: mdl-8125324

ABSTRACT

We describe conditions that improve the specificity of amplification of a G + C-rich (57% G + C) DNA by PCR. Under standard conditions a 368-bp segment of the approx. 2.1-kb repeat unit of a satellite DNA that accounts for approx. 3% of the genome of the Bermuda land crab, Gecarcinus lateralis, was not amplified specifically. To establish optimal conditions for amplification of the segment of the G + C-rich satellite, we used two genetically engineered enzymes, AmpliTaq DNA polymerase and AmpliTaq DNA polymerase, Stoffel fragment (SF), and a number of denaturants or co-solvents. In the absence of denaturants or co-solvents, amplified products of both enzymes contained non-specific bands upon gel electrophoresis. Addition of certain denaturants or co-solvents to PCR mixtures resulted in the production of the single specific band of the expected size. Reagents that improved specificity of the amplified product were formamide, glycerol, DMSO, Tween-20 and NP-40; on the other hand, urea, ethanol and 1-methyl-2-pyrrolidone (NMP) inhibited amplification. Of the two enzymes, SF was more specific and efficient. The products of AmpliTaq DNA polymerase included one or more extra bands, even in the presence of denaturants or co-solvents, except for glycerol or DMSO.


Subject(s)
DNA-Directed DNA Polymerase/metabolism , DNA/analysis , Polymerase Chain Reaction/methods , Solvents , Base Sequence , Cytidine , DNA/chemistry , DNA/metabolism , DNA-Directed DNA Polymerase/genetics , Detergents , Dimethyl Sulfoxide , Formamides , Glycerol , Guanine , Molecular Sequence Data , Nucleic Acid Denaturation , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sensitivity and Specificity , Temperature
12.
Behav Neural Biol ; 58(3): 236-41, 1992 Nov.
Article in English | MEDLINE | ID: mdl-1456945

ABSTRACT

The present experiment shows that a conditioned taste aversion procedure can support discrimination learning at dosages of morphine comparable to those required to produce motivational effects. Sprague-Dawley rats were injected with 4.0 mg/kg morphine sulfate prior to a saccharin-lithium chloride pairing, and physiological saline prior to a saccharin-saline pairing. The rats avoided the saccharin solution following the administration of morphine and consumed significantly more saccharin following saline administration after four discrimination cycles. After this initial discrimination the subjects were trained with progressively lower doses of morphine. Discrimination learning was apparent at doses of 2.0, 1.5, 1.0, 0.75 and 0.5 mg/kg. Animals initially trained with 1.0 mg/kg morphine also learned the discrimination but required 10 training cycles. After this initial discrimination the subjects were trained with progressively lower dosages of morphine and showed a discrimination at a dosage of 0.5 mg/kg.


Subject(s)
Avoidance Learning/drug effects , Conditioning, Classical/drug effects , Discrimination Learning/drug effects , Morphine/pharmacology , Taste/drug effects , Animals , Association Learning/drug effects , Cues , Dose-Response Relationship, Drug , Drinking/drug effects , Male , Rats , Rats, Sprague-Dawley , Retention, Psychology/drug effects
13.
Biol Bull ; 182(2): 165-166, 1992 Apr.
Article in English | MEDLINE | ID: mdl-29303669
14.
Biol Bull ; 181(3): 427-441, 1991 Dec.
Article in English | MEDLINE | ID: mdl-29304681

ABSTRACT

Most of the proteins extracted from exocuticle, endocuticle, and membranous layer of four species of anecdysial (intermolt) crabs (the Bermuda land crab Gecarcinus lateralis, the rock crab Cancer antennarius, the shield-backed kelp crab Pugettia producta, and the southern shield-backed kelp crab Taliepus nuttalli) were 31 kDa or smaller; proteins of similar Mr were common to all three layers. Proteins from the membranous layer were qualitatively indistinguishable in all four species. More proteins 31 kDa or smaller were similar in size and pI to proteins from other exoskeletal layers than were proteins larger than 31 kDa. Proteins extracted from the epicuticle of G. lateralis included a group of five ranging from 54 to 42 kDa that bound 45Ca++ in vitro. The group was not seen in other layers of the exoskeleton of G. lateralis or, with the exception of 44 and 42 kDa protein bands that were in the epicuticle of C. antennarius, in any layers of the exoskeletons of the other three species. During proecdysis, the membranous layer is completely degraded, and proteins 31 kDa or smaller are preferentially degraded from the exocuticle and endocuticle of the old exoskeleton of G. lateralis, which is cast as an exuvia at ecdysis. The relative amounts of proteins in extracts of epicuticle from (1) anecdysial exoskeletons and (2) exuviae were very similar, suggesting that there was little degradation of epicuticle during proecdysis. Some of the proteins of the three inner layers of the exoskeleton of G. lateralis have characteristics similar to those of flexible cuticles of insects; they have acidic pIs and they form "charge trains," i.e., proteins of the same size separated by differences in charge during isoelectric focusing.

15.
Gene ; 82(2): 191-9, 1989 Oct 30.
Article in English | MEDLINE | ID: mdl-2583520

ABSTRACT

Circular plasmids containing pyrimidine purine tracts can form both inter-and intramolecular triplexes. Addition of poly(dTC) to plasmid pTC45, which contains a (TC)45.(GA)45 insert, results in intermolecular triplex formation. Agarose-gel electrophoresis gives rise to many well-resolved bands, which correspond to 1, 2, 3, 4... plasmid molecules attached to the added pyrimidine strand. In the electron microscope these complexes appear as a rosette of petals. The mobility of these triplex-containing complexes can be retarded by the addition of a triplex-specific monoclonal antibody, Jel318. Intramolecular triplex formation can be demonstrated at pH 5 in pTC45 and also in pT463-I, a plasmid containing a segment of a crab satellite DNA with both (G)n.(C)n and (TCC)n.(GGA)n inserts. However, although the intermolecular triplex remains stable for some time at pH 8, intramolecular triplex formation only occurs at low pH. Triplexes can also be detected by an immunoblotting procedure with Jel318. This unfamiliar structure is readily demonstrated in eukaryotic extracts, but not in cell extracts from Escherichia coli. Triplexes may thus be an inherent feature of eukaryotic chromosome structure.


Subject(s)
Chromosomes/ultrastructure , Nucleic Acid Conformation , Plasmids , Antibodies, Monoclonal/immunology , DNA/immunology , Hydrogen-Ion Concentration , Immunoblotting , Microscopy, Electron
16.
Gene ; 71(1): 165-76, 1988 Nov 15.
Article in English | MEDLINE | ID: mdl-3215523

ABSTRACT

Sequence analyses show that deletions of 10 and 12 bp occur at homologous sites in a domain that is rich in alternating purines and pyrimidines (Pu/Py) in B42 and EXT, two cloned variants of a complex satellite DNA. A 3-bp deletion occurs 27 bp upstream from the site of the specific deletions in B42 and RU, a third cloned satellite variant that has not suffered the 10-bp deletion. Under torsional stress, the Pu/Py-rich domain adopts a Z-conformation as shown by (i) inhibition of cutting at a BssHII site that accounts for 2/5 of a 15-bp tract of pure Pu/Py in the domain; (ii) binding of polyclonal and monoclonal anti-Z-DNA antibodies to the domain; and (iii) antibody stabilization and subsequent relaxation of the Z-region.


Subject(s)
DNA, Satellite/genetics , Animals , Antibodies, Monoclonal , Base Sequence , Brachyura/genetics , Chromosome Deletion , Cloning, Molecular , DNA, Recombinant , DNA, Satellite/immunology , Genetic Variation , Molecular Sequence Data , Nucleic Acid Conformation , Plasmids
17.
J Biol Chem ; 261(21): 9865-71, 1986 Jul 25.
Article in English | MEDLINE | ID: mdl-3015912

ABSTRACT

Four Ca2+-dependent proteinase activities in lobster claw and abdominal muscle have been resolved by high-performance liquid chromatography on gel filtration and ion-exchange columns. These activities, which do not appear to be generated by autolytic or other degradative processes, differed from each other in molecular weight (peak I, Mr = 310,000; peak IIa, Mr = 125,000; peak IIb, Mr = 195,000; peak III, Mr = 59,000) and net charge, as indicated by elution from an ion-exchange column with a NaCl gradient. Although optimum activity occurred at 5-10 mM Ca2+ at pH 6.8, the enzymes differed in activation at lower Ca2+ concentrations. The concentrations required for half-maximal activation were 0.6 mM for peak III, 1 mM for peak I, 1.5 mM for peak IIa, and 2 mM for peak IIb. Only the peak III proteinase was active at 100 microM Ca2+; none were active at 10 microM and below. Although the lobster Ca2+-dependent proteinases were all inhibited, from 75 to 98%, by the cysteine proteinase inhibitors leupeptin, N-[N-(L-3-trans-carboxyoxirane-2-carbonyl)-L-leucyl]agmatine, and iodoacetamide, they showed differential responses to the aspartic proteinase inhibitor pepstatin and the serine proteinase inhibitor phenylmethanesulfonyl fluoride. Peak I was moderately (26%) inhibited by phenylmethanesulfonyl fluoride, whereas peaks IIb and III were inhibited 26 and 90%, respectively, by pepstatin. This is the first description of multiple forms of Ca2+-dependent proteinase that require Ca2+ at millimolar levels in any tissue, either vertebrate or invertebrate.


Subject(s)
Calcium Channel Blockers/pharmacology , Calcium/pharmacology , Calpain/metabolism , Muscles/enzymology , Nephropidae/enzymology , Animals , Chromatography, Gel , Chromatography, High Pressure Liquid , Chromatography, Ion Exchange , Iodoacetamide/pharmacology , Leupeptins/pharmacology , Molecular Weight , Pepstatins/pharmacology , Phenylmethylsulfonyl Fluoride/pharmacology
18.
J Biol Chem ; 261(19): 8994-9001, 1986 Jul 05.
Article in English | MEDLINE | ID: mdl-3013872

ABSTRACT

A domain exhibiting major sequence divergences among three cloned repeat units of a complex satellite DNA of the Bermuda land crab contains a repetitive polypyrimidine.polypurine segment consisting of a long C.G tract embedded between runs of CCT.AGG and CGCAC.GTGCG and their variations. The domain adopts at least two types of altered conformations that are markedly affected by pH and negative superhelical density; only one is sensitive to ionic strength. Supercoil-dependent distortions in helical structure are most pronounced at points of interruption in compositional bias in this domain and a similar although less extensive, divergent domain nearby. Since the domain is the site of major sequence divergences among individual satellite repeat units, the altered conformations may be involved in site-specific recombination between repeat units, either those arranged in tandem or those scattered throughout the genome.


Subject(s)
DNA/genetics , Nucleic Acid Conformation , Animals , Base Sequence , Cloning, Molecular , DNA Restriction Enzymes , Endonucleases , Plasmids , Purines , Pyrimidines , Single-Strand Specific DNA and RNA Endonucleases
19.
J Biol Chem ; 260(15): 8964-72, 1985 Jul 25.
Article in English | MEDLINE | ID: mdl-2991230

ABSTRACT

Major differences among the sequences of the repeat units of a very complex satellite DNA are located in domains which are sensitive to S1 nuclease under torsional stress, indicating that the domains assume unusual secondary or tertiary structures. Repeat units of the satellite, which accounts for 3% of the DNA of a land crab, have been inserted into pBR322 and the primary sequences of three cloned variants determined. The variants selected for sequencing include 1) RU (2089 base pairs (bp) ), representative of the average size of repeat units of cellular satellite; 2) TRU (1674 bp), truncated at an extra EcoRI site; and 3) EXT (2639 bp), extended by a 5-fold amplification of a 142-bp segment, one copy of which is present in RU and TRU (Bonnewell, V., Fowler, R.F., and Skinner, D.M. (1983) Science 221, 862-865). It appears that every copy of the satellite may be different and that the variants do not arise from cloning accidents. Extensive domains, as long as approximately 560 bp, are greater than 95% homologous among RU, TRU, and EXT; these conserved domains are composed of DNA whose base composition and sequences do not have remarkable features. By contrast, the sequences that comprise the divergent domains are unusually rich in 1) tracts of (dG X dC) 13-23 and arrangements of similar but not identical repetitive oligonucleotides or 2) alternating purines and pyrimidines (pu/py).


Subject(s)
DNA, Satellite/analysis , Base Sequence , DNA Restriction Enzymes , Endonucleases , Gene Amplification , Nucleic Acid Conformation , Repetitive Sequences, Nucleic Acid , Single-Strand Specific DNA and RNA Endonucleases
20.
J Biol Chem ; 260(2): 1296-303, 1985 Jan 25.
Article in English | MEDLINE | ID: mdl-2981841

ABSTRACT

One major very highly repeated (VHR) DNA (approximately 7 X 10(6) copies/genome; repeat unit = 156 base pairs (bp)), a family of three minor VHR DNAs (approximately 2.8 X 10(6) copies/genome; repeat units = 71-74 bp), and a number of trace components account for almost 30% of the genome of a hermit crab. The repeat units of the three minor variants are defined by identical 14-bp G + C-rich inverted repeats that might form cruciforms. Two copies of the repeat unit (CCTA) of one of two patent satellites of this crab (Skinner, D. M., and Beattie, W. G. (1974) Biochemistry 13, 3922-3929; Skinner, D. M., Beattie, W. G., Blattner, F. R., Stark, B. P., and Dahlberg, J. E. (1974) Biochemistry 13, 3930-3937) occur at the center of one in seven of the G + C-rich inverted repeats; copies of the other patent satellite (Chambers, C. A., Schell, M. P., and Skinner, D. M. (1978) Cell 13, 97-110) are found in main component DNA. The sequences of both the major and minor VHR DNAs are characterized by short tracts of An and/or Tn (n = 4-7) residues whose presence would permit the formation of perfectly matched stems separated by loops of 8-16 bp. The An and/or Tn tracts are interspersed with segments of G + C-rich DNA and are arranged differently in the major and minor VHR DNAs. Although the repeat units of the major and the three minor VHR DNAs are arranged in tandem, the composition and sequence of their bases are such that they do not form distinct bands in CsCl gradients; they are cryptic satellites.


Subject(s)
Anomura/genetics , Chromosome Inversion , DNA/analysis , Repetitive Sequences, Nucleic Acid , Animals , Centrifugation, Density Gradient , DNA Restriction Enzymes/metabolism , Electrophoresis, Polyacrylamide Gel , Nucleic Acid Conformation
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