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3.
J Knee Surg ; 30(7): 704-711, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28024306

ABSTRACT

Novel graft types, fixation methods, and means for augmenting anterior cruciate ligament (ACL) reconstructions require preclinical validation prior to safe and effective clinical application. The objective of this study was to describe and validate a translational canine model for all-inside arthroscopic complete ACL reconstruction using a quadriceps tendon allograft with internal brace (QTIB). With institutional approval, adult research hounds underwent complete transection of the native ACL followed by all-inside ACL reconstruction using the novel QTIB construct with suspensory fixation (n = 10). Contralateral knees were used as nonoperated controls (n = 10). Dogs were assessed over a 6-month period using functional, diagnostic imaging, gross, biomechanical, and histologic outcome measures required for preclinical animal models. Study results suggest that the novel QTIB construct used for complete ACL reconstruction can provide sustained knee stability and function without the development of premature osteoarthritis in a rigorous and valid preclinical model. The unique configuration of the QTIB construct-the combination of a tendon allograft with a synthetic suture tape internal brace-allowed for an effective biologic-synthetic load-sharing ACL construct. It prevented early failure, allowed for direct, four-zone graft-to-bone healing, and functional graft remodeling while avoiding problems noted with use of all-synthetic grafts.


Subject(s)
Anterior Cruciate Ligament Reconstruction/methods , Tendons/transplantation , Allografts , Animals , Arthroscopy , Dogs , Humans , Knee Joint/surgery , Models, Animal , Quadriceps Muscle/surgery , Quadriceps Muscle/transplantation , Wound Healing
4.
Anal Chem ; 88(5): 2727-33, 2016 Mar 01.
Article in English | MEDLINE | ID: mdl-26881737

ABSTRACT

Oxidation/reduction of thiol residues in proteins is an important type of post-translational modification that is implicated in regulating a range of biological processes. The nature of the modification makes it possible to define a quantifiable electrochemical potential (E(⊕)) for oxidation/reduction that allows cysteine-containing proteins to be ranked based on their propensity to be oxidized. Measuring oxidation of cysteine residues in proteins is difficult using standard electrochemical methods, but top-down mass spectrometry recently has been shown to enable the quantification of E(⊕) for thiol oxidations. In this paper, we demonstrate that mass spectrometry of intact proteins can be used in combination with an isotopic labeling strategy and an automated data analysis algorithm to measure E(⊕) for the thiols in both E. coli Thioredoxin 1 and human Thioredoxin 1. Our methodology relies on accurate mass measurement of proteins using liquid chromatography-mass spectroscopy (LC-MS) analyses and does not necessarily require top-down fragmentation. In addition to analyzing homogeneous protein samples, we also demonstrate that our methodology can be used to determine thiol E(⊕) measurements in samples that contain mixtures of proteins. Thus, the combination of experimential methodology and data analysis regime has the potential to make such measurements in a high-throughput manner and in a manner that is more accessible to a broad community of protein scientists.


Subject(s)
Isotope Labeling , Sulfhydryl Compounds/metabolism , Thioredoxins/metabolism , Alkylation , Humans , Mass Spectrometry , Oxidation-Reduction , Proteomics , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Thioredoxins/chemistry
5.
Biochim Biophys Acta ; 1864(5): 551-61, 2016 May.
Article in English | MEDLINE | ID: mdl-26876500

ABSTRACT

Anterior Gradient-2 (AGR2) is a component of a pro-oncogenic signalling pathway that can promote p53 inhibition, metastatic cell migration, limb regeneration, and cancer drug-resistance. AGR2 is in the protein-disulphide isomerase superfamily containing a single cysteine (Cys-81) that forms covalent adducts with its client proteins. We have found that mutation of Cysteine-81 attenuates its biochemical activity in its sequence-specific peptide docking function, reduces binding to Reptin, and reduces its stability in cells. As such, we evaluated how chemical oxidation of its cysteine affects its biochemical properties. Recombinant AGR2 spontaneously forms covalent dimers in the absence of reductant whilst DTT promotes dimer to monomer conversion. Mutation of Cysteine-81 to alanine prevents peroxide catalysed dimerization of AGR2 in vitro, suggesting a reactive cysteine is central to covalent dimer formation. Both biochemical assays and ESI mass spectrometry were used to demonstrate that low levels of a chemical oxidant promote an intermolecular disulphide bond through formation of a labile sulfenic acid intermediate. However, higher levels of oxidant promote sulfinic or sulfonic acid formation thus preventing covalent dimerization of AGR2. These data together identify the single cysteine of AGR2 as an oxidant responsive moiety that regulates its propensity for oxidation and its monomeric-dimeric state. This has implications for redox regulation of the pro-oncogenic functions of AGR2 protein in cancer cells.


Subject(s)
Neoplasms/genetics , Oxidation-Reduction , Protein Multimerization/genetics , Proteins/genetics , ATPases Associated with Diverse Cellular Activities , Amino Acid Sequence/genetics , Carrier Proteins/chemistry , Carrier Proteins/genetics , Carrier Proteins/metabolism , Cysteine/genetics , Cysteine/metabolism , DNA Helicases/chemistry , DNA Helicases/genetics , DNA Helicases/metabolism , Disulfides/chemistry , Disulfides/metabolism , Drug Resistance, Neoplasm/genetics , Humans , MCF-7 Cells , Mass Spectrometry , Mucoproteins , Mutation , Neoplasms/chemistry , Neoplasms/pathology , Oncogene Proteins , Proteins/chemistry , Proteins/metabolism , Signal Transduction , Sulfenic Acids/metabolism
6.
J Knee Surg ; 29(7): 594-603, 2016 Oct.
Article in English | MEDLINE | ID: mdl-26713594

ABSTRACT

The objective of this study was to compare treatment options for acute management of anterior cruciate ligament (ACL) injuries using preclinical models. Twenty-seven adult purpose-bred research hounds underwent knee surgery (sham control, exposed ACL, or partial-tear ACL) and were assessed over the following 8 weeks. Dogs were randomized into three treatment groups: standard of care (i.e., rest and nonsteroidal anti-inflammatory drugs [NSAIDs]), washout, or leukoreduced platelet-rich plasma (PRP) so that a total of nine dogs received each treatment. Data from the two ACL-injury groups were pooled for each treatment (n = 6 per treatment group) and analyzed for treatment effects. The washout and PRP groups experienced less lameness, pain, and effusion, and greater function and comfortable range of motion compared with the NSAID group, with the PRP group showing most benefits. PRP was associated with the lowest severity of ACL pathology based on arthroscopic assessment. Measurable levels of inflammatory and degradative biomarkers were present in synovial fluid with significant differences noted over time. Based on these findings, washout had positive clinical effects compared with the standard-of-care group especially within the first week of treatment, but became less beneficial over time. A single injection of leukoreduced PRP was associated with favorable clinical results. However, no treatment was significantly "protective" against progression toward osteoarthritis after ACL injury.


Subject(s)
Anterior Cruciate Ligament Injuries/therapy , Animals , Anterior Cruciate Ligament Injuries/surgery , Anterior Cruciate Ligament Reconstruction/methods , Anti-Inflammatory Agents, Non-Steroidal , Arthroscopy , Biomarkers/analysis , Disease Models, Animal , Dogs , Knee Joint/surgery , Platelet-Rich Plasma , Random Allocation , Rest , Synovial Fluid/chemistry , Therapeutic Irrigation
7.
Arthroscopy ; 31(9): 1733-9, 2015 Sep.
Article in English | MEDLINE | ID: mdl-25911394

ABSTRACT

PURPOSE: To compare anterior cruciate ligament (ACL) soft-tissue allograft reconstruction using suspensory versus aperture fixation. METHODS: After we performed prospective power analysis and obtained institutional review board approval, as well as patient consent, 64 patients were block randomized among 3 study sites to the aperture fixation group or suspensory fixation group. All patients underwent all-inside ACL reconstruction with soft-tissue allograft using either (1) femoral and tibial joint-line fixation with a femoral cannulated interference screw and a tibial cannulated interference retrograde screw (aperture) or (2) femoral and tibial cortical buttons (suspensory). Our primary outcome measure was knee anteroposterior (AP) stability measured using the KT-1000 device (MEDmetric, San Diego, CA). Secondary outcome measures included change in pain score on a visual analog scale versus preoperatively, narcotic consumption, International Knee Documentation Committee knee examination rating, International Knee Documentation Committee subjective evaluation score, Knee Society Scores, Short Form 12 scores, and radiographic analysis for socket widening. RESULTS: Ultimately, 6 included patients (9%) were not treated (cancelled surgery), and at 2 years' follow-up, 43 treated patients (74%) completed clinical evaluation. The primary outcome measure, instrumented knee AP stability at 25° of knee flexion, showed no difference between groups (P = .61) at 24 months' follow-up. In addition, no statistically significant difference between groups was observed for secondary measures. CONCLUSIONS: Our results show no significant differences in knee AP stability or other outcomes comparing all-inside ACL allograft reconstruction using aperture fixation and all-inside ACL allograft reconstruction using suspensory fixation. LEVEL OF EVIDENCE: Level II, lesser-quality randomized controlled trial with follow-up of less than 80% at 2 years.


Subject(s)
Anterior Cruciate Ligament Injuries , Anterior Cruciate Ligament Reconstruction/instrumentation , Bone Screws , Adolescent , Adult , Allografts , Anterior Cruciate Ligament/surgery , Equipment Design , Female , Humans , Male , Middle Aged , Prospective Studies , Range of Motion, Articular , Treatment Outcome , Young Adult
8.
J Am Chem Soc ; 135(38): 14276-85, 2013 Sep 25.
Article in English | MEDLINE | ID: mdl-23957439

ABSTRACT

Sphingolipids (SLs) are essential components of cellular membranes formed from the condensation of L-serine and a long-chain acyl thioester. This first step is catalyzed by the pyridoxal-5'-phosphate (PLP)-dependent enzyme serine palmitoyltransferase (SPT) which is a promising therapeutic target. The fungal natural product myriocin is a potent inhibitor of SPT and is widely used to block SL biosynthesis despite a lack of a detailed understanding of its molecular mechanism. By combining spectroscopy, mass spectrometry, X-ray crystallography, and kinetics, we have characterized the molecular details of SPT inhibition by myriocin. Myriocin initially forms an external aldimine with PLP at the active site, and a structure of the resulting co-complex explains its nanomolar affinity for the enzyme. This co-complex then catalytically degrades via an unexpected 'retro-aldol-like' cleavage mechanism to a C18 aldehyde which in turn acts as a suicide inhibitor of SPT by covalent modification of the essential catalytic lysine. This surprising dual mechanism of inhibition rationalizes the extraordinary potency and longevity of myriocin inhibition.


Subject(s)
Fatty Acids, Monounsaturated/chemistry , Serine C-Palmitoyltransferase/antagonists & inhibitors , Crystallography, X-Ray , Kinetics , Mutation , Recombinant Proteins/chemistry , Serine C-Palmitoyltransferase/chemistry , Serine C-Palmitoyltransferase/genetics , Sphingomonas/enzymology , Sphingomonas/genetics
9.
Dalton Trans ; 42(9): 3188-95, 2013 Mar 07.
Article in English | MEDLINE | ID: mdl-23076358

ABSTRACT

The organometallic anticancer complex [(η(6)-bip)Ru(en)Cl](+) (1; bip = biphenyl, en = ethylenediamine) selectively binds to N7 of guanine bases of oligonucleotides and native DNA. However, under physiologically relevant conditions (micromolar Ru concentrations, pH 7, 22 mM NaCl, 310 K), the tripeptide glutathione (γ-L-Glu-L-Cys-Gly; GSH) is kinetically competitive with guanine (as guanosine 3',5'-cyclic monophosphate, cGMP) for coordination with complex 1, and gives rise to a ruthenium thiolato adduct. This thiolato adduct can subsequently undergo oxidation to a sulfenate intermediate, providing a facile route for the formation of a final cGMP adduct via the displacement of S-bound glutathione by G N7 (F. Y. Wang, J. J. Xu, A. Habtemariam, J. Bella and P. J. Sadler, J. Am. Chem. Soc., 2005, 127, 17734). In this work, the competition between GSH and the single-stranded 14-mer oligonucleotide 5'-TATGTACCATGTAT-3' (I) and duplex III (III = I + II, II = 5'-ATACATGGTACATA) for complex 1 and its analogue [(η(6)-tha)Ru(en)Cl](+) (2, tha = tetrahydroanthracene) under physiologically relevant conditions was investigated using conventional ESI-MS and high resolution ESI-FTICR-MS coupled to conventional HPLC and nanoscale HPLC, respectively. The results indicate that whether there was high excess of GSH or not in the reaction mixtures, the reaction of complex 1 or 2 with single-stranded oligonucleotide I always gave rise to mono-ruthenated oligonucleotide, and the reaction of complex 1 or 2 with duplex III gave rise to the mono-ruthenated duplex oligonucleotide. Furthermore, the ruthenation of duplex III by complex 1 showed no significant discrimination between the complementary strands I and II, but complex 2 appeared to bind preferentially to strand II compared to strand I as revealed by the high resolution FTICR-MS analysis. GSH is highly abundant in cells at millimolar concentrations and is well known to be involved in the deactivation of the clinical drug cisplatin and in platinum resistance. Our findings reveal a potentially contrasting role for GSH in the mechanism of action of these ruthenium anticancer complexes that may contribute to the lack of cross-resistance with platinum drugs.


Subject(s)
Binding, Competitive , DNA/metabolism , Glutathione/metabolism , Oligodeoxyribonucleotides/metabolism , Organometallic Compounds/chemistry , Organometallic Compounds/metabolism , Ruthenium/chemistry , Antineoplastic Agents/chemistry , Antineoplastic Agents/metabolism , Base Sequence , DNA/genetics , DNA, Single-Stranded/genetics , DNA, Single-Stranded/metabolism , Oligodeoxyribonucleotides/genetics
10.
J Proteomics ; 75(16): 4912-4920, 2012 Aug 30.
Article in English | MEDLINE | ID: mdl-22796569

ABSTRACT

Analysis of whole animal tissue sections by MALDI MS imaging (MSI) requires effective sample collection and transfer methods to allow the highest quality of in situ analysis of small or hard to dissect tissues. We report on the use of double-sided adhesive conductive carbon tape during whole adult rat tissue sectioning of carboxymethyl cellulose (CMC) embedded animals, with samples mounted onto large format conductive glass and conductive plastic MALDI targets, enabling MSI analysis to be performed on both TOF and FT-ICR MALDI mass spectrometers. We show that mounting does not unduly affect small molecule MSI detection by analyzing tiotropium abundance and distribution in rat lung tissues, with direct on-tissue quantitation achieved. Significantly, we use the adhesive tape to provide support to embedded delicate heat-stabilized tissues, enabling sectioning and mounting to be performed that maintained tissue integrity on samples that had previously been impossible to adequately prepare section for MSI analysis. The mapping of larger peptidomic molecules was not hindered by tape mounting samples and we demonstrate this by mapping the distribution of PEP-19 in both native and heat-stabilized rat brains. Furthermore, we show that without heat stabilization PEP-19 degradation fragments can detected and identified directly by MALDI MSI analysis.


Subject(s)
Microtomy , Specimen Handling/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Thermal Conductivity , Whole Body Imaging , Animals , Carbon/pharmacology , Diagnostic Imaging , Histological Techniques , Hot Temperature , Male , Paraffin Embedding , Rats , Restraint, Physical/methods , Restraint, Physical/physiology , Specimen Handling/instrumentation , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/instrumentation , Surgical Tape/statistics & numerical data , Whole Body Imaging/methods , Whole Body Imaging/veterinary
11.
MCN Am J Matern Child Nurs ; 37(4): 228-33, quiz 234-5, 2012.
Article in English | MEDLINE | ID: mdl-22596036

ABSTRACT

Breastfeeding is widely viewed as the optimal feeding method for infants among professional nursing and medical organizations. Its health benefits have been comprehensively studied and documented for both infants and mothers. Hospitals and birthing centers can strongly influence the outcomes for mothers who choose to breastfeed by establishing effective breastfeeding behaviors immediately after birth and during the hospital stay. The Baby-Friendly USA initiative outlines 10 steps to successful breastfeeding. Although these steps have been successfully supported in practice, they can be difficult to implement due to a variety of factors, including resistance to change. Specific steps generate more barriers to overcome than others--namely exclusive breastfeeding without supplementation or pacifiers, rooming-in for 23 out of 24 hours, and skin-to-skin contact with a parent immediately after birth and during the hospital stay. Our hospital spent 5 years implementing Baby-Friendly practices to prepare for a successful site visit. In the process, barriers to key Baby-Friendly steps were overcome through creative approaches and strategic education for staff, physicians, and parents. The purpose of this article is to outline specific actions taken that assisted our hospital in its successful journey. Those actions and strategies will hopefully be of value to others in their journey toward designation.


Subject(s)
Breast Feeding , Hospitals, Maternity/standards , Maternal-Child Nursing/education , Mothers/psychology , Rooming-in Care , Breast Feeding/psychology , Education, Nursing , Female , Guideline Adherence , Health Education , Health Promotion , Humans , Infant, Newborn , Mothers/education , Patient Education as Topic , Practice Guidelines as Topic
12.
J Biol Inorg Chem ; 17(4): 573-88, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22349975

ABSTRACT

Isothermal calorimetric studies of the binding of iron(III) citrate to ferric ion binding protein from Neisseria gonorrhoeae suggested the complexation of a tetranuclear iron(III) cluster as a single step binding event (apparent binding constant K(app) (ITC) = 6.0(5) × 10(5) M(-1)). High-resolution Fourier transform ion cyclotron resonance mass spectrometric data supported the binding of a tetranuclear oxo(hydroxo) iron(III) cluster of formula [Fe(4)O(2)(OH)(4)(H(2)O)(cit)](+) in the interdomain binding cleft of FbpA. The mutant H9Y-nFbpA showed a twofold increase in the apparent binding constant [K(app) (ITC) = 1.1(7) × 10(6) M(-1)] for the tetranuclear iron(III) cluster compared to the wild-type protein. Mössbauer spectra of Escherichia coli cells overexpressing FbpA and cultured in the presence of added (57)Fe citrate were indicative of the presence of dinuclear and polynuclear clusters. FbpA therefore appears to have a strong affinity for iron clusters in iron-rich environments, a property which might endow the protein with new biological functions.


Subject(s)
Bacterial Proteins/chemistry , Ferric Compounds/chemistry , Iron-Binding Proteins/chemistry , Bacterial Proteins/genetics , Binding Sites , Calorimetry , Cloning, Molecular , Iron-Binding Proteins/genetics , Mass Spectrometry , Models, Molecular , Molecular Structure , Neisseria gonorrhoeae , Spectroscopy, Mossbauer
13.
Nucleic Acids Res ; 40(11): 4794-803, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22323521

ABSTRACT

Chemical inhibitors of histone deacetylase (HDAC) activity are used as experimental tools to induce histone hyperacetylation and deregulate gene transcription, but it is not known whether the inhibition of HDACs plays any part in the normal physiological regulation of transcription. Using both in vitro and in vivo assays, we show that lactate, which accumulates when glycolysis exceeds the cell's aerobic metabolic capacity, is an endogenous HDAC inhibitor, deregulating transcription in an HDAC-dependent manner. Lactate is a relatively weak inhibitor (IC(50) 40 mM) compared to the established inhibitors trichostatin A and butyrate, but the genes deregulated overlap significantly with those affected by low concentrations of the more potent inhibitors. HDAC inhibition causes significant up and downregulation of genes, but genes that are associated with HDAC proteins are more likely to be upregulated and less likely to be downregulated than would be expected. Our results suggest that the primary effect of HDAC inhibition by endogenous short-chain fatty acids like lactate is to promote gene expression at genes associated with HDAC proteins. Therefore, we propose that lactate may be an important transcriptional regulator, linking the metabolic state of the cell to gene transcription.


Subject(s)
Gene Expression Regulation , Histone Deacetylase Inhibitors/pharmacology , Lactic Acid/pharmacology , Acetylation , Anions , Butyrates/pharmacology , Cell Line , Culture Media/chemistry , Gene Expression Regulation/drug effects , Histones/metabolism , Humans , Lactic Acid/analysis
14.
Anal Biochem ; 420(1): 96-8, 2012 Jan 01.
Article in English | MEDLINE | ID: mdl-21964498

ABSTRACT

Oxidation of cysteine is now known to serve as a fundamental mechanism to control protein function or activity. Many redox-regulated proteins do not oxidize to homogeneity, resulting in a mixture of reduced and oxidized species which cannot be separated chromatographically. Here we describe a protocol for the separation of reduced and oxidized forms of the tumor suppressor protein p53. This purification method relies on the reversible labeling of thiol groups with biotin and exploitation of the ultrastrong biotin-avidin interaction. This purification procedure can be applied to other cysteine-containing proteins where enrichment of the oxidized form is required.


Subject(s)
Chromatography, Affinity/methods , Tumor Suppressor Protein p53/isolation & purification , Tumor Suppressor Protein p53/metabolism , Avidin/chemistry , Biotin/chemistry , Cysteine/chemistry , Humans , Oxidation-Reduction , Sulfhydryl Compounds/chemistry
15.
Adv Neonatal Care ; 11(4): 255-67, 2011 Aug.
Article in English | MEDLINE | ID: mdl-22123347

ABSTRACT

Newborns exposed to illicit drugs or alcohol in utero can face physical, social, and emotional obstacles. Outcomes for children with fetal alcohol syndrome disorders are well documented in the literature. Data exist on the effects of maternal illicit drug use. Identifying perinatal substance abuse can increase positive outcomes for newborns and create the opportunity for mothers to access assistance through referrals to community resources.This article provides insight on how hospitals can implement an effective screening tool through patient surveying and testing, nurse education, and collaboration with community agencies in a multidisciplinary advisory committee setting.This discussed method of universal perinatal screening results in increased positive screens and increased referrals for care and support. Emphasis is placed on universal screening and testing methods. Nurses are trained in motivational interview techniques that convey empathy, listening, and objectivity. Community agencies partner with hospital staff through onsite meetings with families that determine the best discharge plan for the newborn. The multidisciplinary advisory committee meets continually to discuss future enhancements.


Subject(s)
Perinatal Care/methods , Substance Abuse Detection/methods , Substance-Related Disorders/diagnosis , Colorado/epidemiology , Community Mental Health Services , Education, Nursing , Female , Hospitals , Humans , Infant, Newborn , Interdisciplinary Communication , Interview, Psychological , Meconium/chemistry , Pregnancy , Substance-Related Disorders/epidemiology
16.
J Am Soc Mass Spectrom ; 22(8): 1432-40, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21953198

ABSTRACT

Noncovalent protein-ligand and protein-protein complexes are readily detected using electrospray ionization mass spectrometry (ESI MS). Furthermore, recent reports have demonstrated that careful use of electron capture dissociation (ECD) fragmentation allows covalent backbone bonds of protein complexes to be dissociated without disruption of noncovalent protein-ligand interactions. In this way the site of protein-ligand interfaces can be identified. To date, protein-ligand complexes, which have proven tractable to this technique, have been mediated by ionic electrostatic interactions, i.e., ion pair interactions or salt bridging. Here we extend this methodology by applying ECD to study a protein-peptide complex that contains no electrostatics interactions. We analyzed the complex between the 21 kDa p53-inhibitor protein anterior gradient-2 and its hexapeptide binding ligand (PTTIYY). ECD fragmentation of the 1:1 complex occurs with retention of protein-peptide binding and analysis of the resulting fragments allows the binding interface to be localized to a C-terminal region between residues 109 and 175. These finding are supported by a solution-phase competition assay, which implicates the region between residues 108 and 122 within AGR2 as the PTTIYY binding interface. Our study expands previous findings by demonstrating that top-down ECD mass spectrometry can be used to determine directly the sites of peptide-protein interfaces. This highlights the growing potential of using ECD and related top-down fragmentation techniques for interrogation of protein-protein interfaces.


Subject(s)
Fourier Analysis , Mass Spectrometry/methods , Peptide Fragments/chemistry , Protein Interaction Mapping/methods , Proteins/chemistry , Amino Acid Sequence , Binding Sites , Electrons , Humans , Molecular Sequence Data , Mucoproteins , Oncogene Proteins , Peptide Fragments/metabolism , Protein Binding , Proteins/metabolism
17.
J Am Soc Mass Spectrom ; 22(5): 888-97, 2011 May.
Article in English | MEDLINE | ID: mdl-21472523

ABSTRACT

The tumor suppressor p53 is a redox-regulated transcription factor involved in cell cycle arrest, apoptosis and senescence in response to multiple forms of stress, as well as many other cellular processes such as DNA repair, glycolysis, autophagy, oxidative stress and differentiation. The discovery of cysteine-targeting compounds that cause re-activation of mutant p53 and the death of tumor cells in vivo has emphasized the functional importance of p53 thiols. Using a combination of top-down and middle-down FTICR mass spectrometry, we show that of the 10 Cys residues in the core domain of wild-type p53, Cys182 and Cys277 exhibit a remarkable preference for modification by the alkylating reagent N-ethylmaleimide. The assignment of Cys182 and Cys277 as the two reactive Cys residues was confirmed by site-directed mutagenesis. Further alkylation of p53 beyond Cys182 and Cys277 was found to trigger co-operative modification of the remaining seven Cys residues and protein unfolding. This study highlights the power of top-down FTICR mass spectrometry for analysis of the cysteine reactivity and redox chemistry in multiple cysteine-containing proteins.


Subject(s)
Cysteine/chemistry , Mass Spectrometry/methods , Tumor Suppressor Protein p53/chemistry , Alkylating Agents , Amino Acid Sequence , Crystallography, X-Ray , Cysteine/metabolism , Ethylmaleimide , Fourier Analysis , Humans , Models, Molecular , Molecular Sequence Data , Oxidation-Reduction , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Protein Unfolding , Temperature , Tumor Suppressor Protein p53/metabolism
18.
Rapid Commun Mass Spectrom ; 25(7): 969-72, 2011 Apr 15.
Article in English | MEDLINE | ID: mdl-21416534

ABSTRACT

Mass spectrometry imaging (MSI) is a powerful tool in metabolomics and proteomics for the spatial localization and identification of pharmaceuticals, metabolites, lipids, peptides and proteins in biological tissues. However, sample preparation remains a crucial variable in obtaining the most accurate distributions. Common washing steps used to remove salts, and solvent-based matrix application, allow analyte spreading to occur. Solvent-free matrix applications can reduce this risk, but increase the possibility of ionisation bias due to matrix adhesion to tissue sections. We report here the use of matrix-free MSI using laser desorption ionisation performed on a 12 T Fourier transform ion cyclotron resonance (FTICR) mass spectrometer. We used unprocessed tissue with no post-processing following thaw-mounting on matrix-assisted laser desorption ionisation (MALDI) indium-tin oxide (ITO) target plates. The identification and distribution of a range of phospholipids in mouse brain and kidney sections are presented and compared with previously published MALDI time-of-flight (TOF) MSI distributions.


Subject(s)
Fourier Analysis , Histocytochemistry/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Animals , Brain Chemistry , Kidney/chemistry , Metabolomics , Mice , Phospholipids/analysis , Tin Compounds
19.
Anal Chem ; 82(5): 1897-904, 2010 Mar 01.
Article in English | MEDLINE | ID: mdl-20112916

ABSTRACT

We have developed an automated quench-flow microreactor which interfaces directly to an electrospray ionization (ESI) mass spectrometer. We have used this device in conjunction with ESI Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) to demonstrate the potential of this approach for studying the mechanistic details of enzyme reactions. For the model system chosen to test this device, namely, the pre-steady-state hydrolysis of p-nitrophenyl acetate by the enzyme chymotrypsin, the kinetic parameters obtained are in good agreement with those in the literature. To our knowledge, this is the first reported use of online quench-flow coupled with FTICR MS. Furthermore, we have exploited the power of FTICR MS to interrogate the quenched covalently bound enzyme intermediate using top-down fragmentation. The accurate mass capabilities of FTICR MS permitted the nature of the intermediate to be assigned with high confidence. Electron capture dissociation (ECD) fragmentation allowed us to locate the intermediate to a five amino acid section of the protein--which includes the known catalytic residue, Ser(195). This experimental approach, which uniquely can provide both kinetic and chemical details of enzyme mechanisms, is a potentially powerful tool for studies of enzyme catalysis.


Subject(s)
Chymotrypsin/metabolism , Cyclotrons , Fourier Analysis , Spectrometry, Mass, Electrospray Ionization/methods , Amino Acid Sequence , Chymotrypsin/chemistry , Kinetics , Molecular Sequence Data
20.
Biochemistry ; 49(6): 1319-30, 2010 Feb 16.
Article in English | MEDLINE | ID: mdl-20078128

ABSTRACT

Peroxiredoxins are ubiquitous proteins that catalyze the reduction of hydroperoxides, thus conferring resistance to oxidative stress. Using high-resolution mass spectrometry, we recently reclassified one such peroxiredoxin, bacterioferritin comigratory protein (BCP) of Escherichia coli, as an atypical 2-Cys peroxiredoxin that functions through the formation of an intramolecular disulfide bond between the active and resolving cysteine. An engineered E. coli BCP, which lacked the resolving cysteine, retained enzyme activity through a novel catalytic pathway. Unlike the active cysteine, the resolving cysteine of BCP peroxiredoxins is not conserved across all members of the family. To clarify the catalytic mechanism of native BCP enzymes that lack the resolving cysteine, we have investigated the BCP homologue of Burkholderia cenocepacia. We demonstrate that the B. cenocepacia BCP (BcBCP) homologue functions through a 1-Cys catalytic pathway. During catalysis, BcBCP can utilize thioredoxin as a reductant for the sulfenic acid intermediate. However, significantly higher peroxidase activity is observed utilizing glutathione as a resolving cysteine and glutaredoxin as a redox partner. Introduction of a resolving cysteine into BcBCP changes the activity from a 1-Cys pathway to an atypical 2-Cys pathway, analogous to the E. coli enzyme. In contrast to the native B. cenocepacia enzyme, thioredoxin is the preferred redox partner for this atypical 2-Cys variant. BCP-deficient B. cenocepacia exhibit a growth-phase-dependent hypersensitivity to oxidative killing. On the basis of sequence alignments, we believe that BcBCP described herein is representative of the major class of bacterial BCP peroxiredoxins. To our knowledge, this is the first detailed characterization of their catalytic activity. These studies support the subdivision of the BCP family of peroxiredoxins into two classes based on their catalytic activity.


Subject(s)
Bacterial Proteins/metabolism , Burkholderia/chemistry , Peroxiredoxins/metabolism , Amino Acid Sequence , Animals , Bacterial Proteins/classification , Bacterial Proteins/genetics , Catalysis , Cell Line , Escherichia coli/enzymology , Escherichia coli Proteins/classification , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Mice , Molecular Sequence Data , Mutagenesis, Site-Directed , NADP/metabolism , Oxidation-Reduction , Peroxiredoxins/classification , Peroxiredoxins/genetics , Protein Transport , Sulfhydryl Compounds/chemistry , Thioredoxin-Disulfide Reductase/metabolism
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