Spectroscopic detection of the gallium methylene (GaCH2 and GaCD2) free radical in the gas phase by laser-induced fluorescence and emission spectroscopy.

GaCH2, a free radical thought to play a role in the chemical vapor deposition of gallium-containing thin films and semiconductors, has been spectroscopically detected for the first time. The radical was produced in a pulsed discharge jet using a precursor mixture of trimethylgallium vapor in high pressure argon and studied by laser-induced fluorescence and wavelength resolved emission techniques. Partially rotationally resolved spectra of the hydrogenated and deuterated species were obtained, and they exhibit the nuclear statistical weight variations and subband structure expected for a 2A2-2B1 electronic transition. The measured spectroscopic quantities have been compared to our own ab initio calculations of the ground and excited state properties. The electronic spectrum of gallium methylene is similar to the corresponding spectrum of the aluminum methylene radical, which we reported in 2022.

Spectroscopic detection of the stannylidene (H2C=Sn and D2C=Sn) molecule in the gas phase.

The H2CSn and D2CSn molecules have been detected for the first time by laser-induced fluorescence (LIF) and emission spectroscopic techniques through the B̃1B2-X̃1A1 electronic transition in the 425-400 nm region. These reactive species were prepared in a pulsed electric discharge jet using (CH3)4Sn or (CD3)4Sn diluted in high-pressure argon. Transitions to the electronic excited state of the jet-cooled molecules were probed with LIF, and the ground state and low-lying Ã1A2 state energy levels were measured from single vibronic level emission spectra. We supported the experimental studies by a variety of ab initio calculations that predicted the energies, geometries, and vibrational frequencies of the ground and lower excited electronic states. The spectroscopy of stannylidene (H2CSn) is in many aspects similar to that of silylidene (H2CSi) and germylidene (H2CGe).

Spectroscopic identification and characterization of the aluminum methylene (AlCH2) free radical.

The AlCH2 free radical has been spectroscopically identified for the first time. This highly reactive species was produced in an electric discharge jet using trimethylaluminum vapor in high pressure argon as the precursor. The laser-induced fluorescence spectrum of the B̃2A2-X̃2B1 band system in the 513-483 nm region was recorded, and the 0-0 bands of AlCH2 and AlCD2 were studied at high resolution. The fine structure splittings were found to be due primarily to the Fermi contact interaction in the excited state rather than the usual spin-rotation coupling. Rotational analysis gave the molecular constants of the combining states, and the geometries were obtained as r″A1-C=1.9591A◦,r″C-H=1.1061A◦,θHCH ″=110.41◦ and r'A1-C=1.9431A◦,r'C-H=1.0911A◦,θHCH '=115.41◦. The bond lengths correspond to an aluminum-carbon single bond in both states.

Barely fluorescent molecules. II. Twin-discharge jet laser-induced fluorescence spectroscopy of HSnBr and DSnBr.

HSnBr and DSnBr have been detected for the first time by a combination of laser-induced fluorescence (LIF), fluorescence hole-burning, and wavelength resolved emission spectroscopies. The transient molecules were produced in a twin-discharge jet using separate precursor streams of SnH4/SnD4 and HBr/DBr, both diluted in high pressure argon. The Ã1A″-X̃1A' spectrum of HSnBr only consists of the 00 0 and 20 1 cold bands that show clearly resolved subband structure with fluorescence lifetimes varying from 526 to 162 ns. The DSnBr LIF spectrum exhibits four bands (00 0, 20 1, 20 2, and 10 1) whose fluorescence lifetimes decrease from 525 ns (00) to 175 ns (11). Single vibronic level emission spectra have provided extensive information on the ground state vibrations, including all the anharmonicities and the harmonic frequencies. Fluorescence hole-burning experiments have shown that a few higher HSnBr nonfluorescent levels are very short-lived but still detectable. The ab initio studies of Tarroni and Clouthier [J. Chem. Phys. 156, 064304 (2022)] show that these molecules dissociate into SnBr + H on the excited state potential surface and this is the cause of the short fluorescence lifetimes and breaking off of the LIF spectra. HSnBr is a barely fluorescent molecule in the sense that only vibrational levels less than or equal to 317 cm-1 in the excited state emit detectable photons down to the ground state.

Barely fluorescent molecules. I. Twin-discharge jet laser-induced fluorescence spectroscopy of HSnCl and DSnCl.

The divalent tin transient molecules HSnCl and DSnCl have been detected for the first time by laser-induced fluorescence (LIF) spectroscopy. HSnCl/DSnCl were produced in a twin-discharge jet using separate precursor streams of SnH4/SnD4 and the discharge products from HCl/DCl, both diluted in high pressure argon. The Ã1A″-X̃1A' spectrum of HSnCl consists of a single vibronic 00 0 band with a very short fluorescence lifetime (∼30 ns). In contrast, the LIF spectrum of DSnCl exhibits three bands (00 0,20 1,and20 2), whose fluorescence lifetimes decrease from 393 ns (00) to less than 10 ns (22). Single vibronic level emission spectra have been recorded, providing information on all three vibrational modes in the ground state. Previous detailed ab initio studies indicate that these molecules dissociate into SnCl + H on the excited state potential surface and this is the cause of the short fluorescence lifetimes and breaking off of the fluorescence. It is fortunate that the HSnCl excited state zero-point level is still fluorescent or it would not be detectable by LIF spectroscopy.

The electronic spectrum of the jet-cooled stibino (SbH2) free radical.

The Ã2A1-X̃2B1 electronic transition of the jet-cooled stibino (SbH2 and SbD2) free radical has been observed for the first time using laser induced fluorescence (LIF) detection. The radicals were produced by a pulsed electric discharge through a mixture of stibine (SbH3 or SbD3) in high pressure argon at the exit of a pulsed molecular beam valve. SbH2 exhibits only three LIF bands, assigned as 21 0, 00 0, and 20 1, with a fluorescence lifetime (τ), which decreases from ∼50 ns for 00 to <10 ns for 21. LIF transitions to the 00 (τ ∼ 2 µs), 21 (τ ∼ 400 ns), and 22 (τ ∼ 75 ns) upper vibronic states of SbD2 were also observed. High-resolution spectra exhibited large spin-rotation splittings and small resolved antimony hyperfine splittings due to a substantial Fermi contact interaction in the excited state. The experimentally determined rotational constants gave effective molecular structures of r0 ″ = 1.724(2) Å, θ0 ″ = 90.38(7)° and r0 ' = 1.693(6) Å, θ0 ' = 120.6(3)°. The ground state bending vibrational levels up to eight quanta (6404 cm-1) in SbH2 and 12 quanta (6853 cm-1) in SbD2 were measured from dispersed fluorescence spectra. All indications are that SbH2 undergoes a dissociative process at low vibrational energies in the excited electronic state.

Identification of the Jahn-Teller active trichlorosiloxy (SiCl3O) free radical in the gas phase.

The Ã2A1-X̃2E electronic transition of the jet-cooled trichlorosiloxy (SiCl3O) free radical has been observed for the first time in the 650-590 nm region by laser induced fluorescence (LIF) detection. The radical was produced by a pulsed electric discharge through a mixture of silicon tetrachloride and oxygen in high pressure argon at the exit of a pulsed molecular beam valve. The LIF spectrum shows low frequency intervals, which we assign as activity in the normally forbidden degenerate v5 ' and v6 ' modes, indicative of a significant Jahn-Teller effect in the ground state. Single vibronic level emission spectra show level dependent spin-orbit splittings in the ground state and Jahn-Teller predictable variations depending on which upper state level is pumped. The measured lower state energy levels have been fitted to a Jahn-Teller model that simultaneously includes spin-orbit coupling and linear and quadratic multimode coupling. In SiCl3O, the Jahn-Teller interaction predominates over spin-orbit effects.

Laser-induced fluorescence detection of the elusive SiCF free radical.

The SiCF free radical has been spectroscopically identified for the first time. The radical was produced in an electric discharge jet using CF3Si(CH3)3 or CF3SiH3 vapor in high pressure argon as the precursor. The laser-induced fluorescence spectrum of the Ã∑+2-X̃∏2 band system in the 610 - 550 nm region was recorded and the ∏3/22 spin component of the 0-0 band was studied at high resolution. Rotational analysis gave the B values for the combining states, and by fixing the CF bond lengths at ab initio values we obtained r″Si-C=1.6921Å and r'Si-C=1.594(1)Å. The bond lengths correspond to a silicon-carbon double bond in the ground state and an unusual Si-C triple bond in the excited state. Single vibronic level emission spectra yielded the ground state bending and stretching energy levels. These were fitted to a Renner-Teller model that included spin-orbit and limited vibrational anharmonicity effects.

Data on coding association rules from an inpatient administrative health data coded by International classification of disease - 10th revision (ICD-10) codes.

Data presented in this article relates to the research article entitled "Exploration of association rule mining for coding consistency and completeness assessment in inpatient administrative health data" (Peng et al. [1]) in preparation). We provided a set of ICD-10 coding association rules in the age group of 55 to 65. The rules were extracted from an inpatient administrative health data at five acute care hospitals in Alberta, Canada, using association rule mining. Thresholds of support and confidence for the association rules mining process were set at 0.19% and 50% respectively. The data set contains 426 rules, in which 86 rules are not nested. Data are provided in the supplementary material. The presented coding association rules provide a reference for future researches on the use of association rule mining for data quality assessment.

Exploration of association rule mining for coding consistency and completeness assessment in inpatient administrative health data.

OBJECTIVE: Data quality assessment is a challenging facet for research using coded administrative health data. Current assessment approaches are time and resource intensive. We explored whether association rule mining (ARM) can be used to develop rules for assessing data quality. MATERIALS AND METHODS: We extracted 2013 and 2014 records from the hospital discharge abstract database (DAD) for patients between the ages of 55 and 65 from five acute care hospitals in Alberta, Canada. The ARM was conducted using the 2013 DAD to extract rules with support ≥0.0019 and confidence ≥0.5 using the bootstrap technique, and tested in the 2014 DAD. The rules were compared against the method of coding frequency and assessed for their ability to detect error introduced by two kinds of data manipulation: random permutation and random deletion. RESULTS: The association rules generally had clear clinical meanings. Comparing 2014 data to 2013 data (both original), there were 3 rules with a confidence difference >0.1, while coding frequency difference of codes in the right hand of rules was less than 0.004. After random permutation of 50% of codes in the 2014 data, average rule confidence dropped from 0.72 to 0.27 while coding frequency remained unchanged. Rule confidence decreased with the increase of coding deletion, as expected. Rule confidence was more sensitive to code deletion compared to coding frequency, with slope of change ranging from 1.7 to 184.9 with a median of 9.1. CONCLUSION: The ARM is a promising technique to assess data quality. It offers a systematic way to derive coding association rules hidden in data, and potentially provides a sensitive and efficient method of assessing data quality compared to standard methods.

Detection and characterization of the tin dihydride (SnH2 and SnD2) molecule in the gas phase.

The SnH2 and SnD2 molecules have been detected for the first time in the gas phase by laser-induced fluorescence (LIF) and emission spectroscopic techniques through the Ã1B1-X̃1A1 electronic transition. These reactive species were prepared in a pulsed electric discharge jet using (CH3)4Sn or SnH4/SnD4 precursors diluted in high pressure argon. Transitions to the electronic excited state of the jet-cooled molecules were probed with LIF, and the ground state energy levels were measured from single rovibronic level emission spectra. The LIF spectrum of SnD2 afforded sufficient rotational structure to determine the ground and excited state geometries: r0″ = 1.768 Å, θ0″ = 91.0°, r0' = 1.729 Å, θ0' = 122.9°. All of the observed LIF bands show evidence of a rotational-level-dependent predissociation process which rapidly decreases the fluorescence yield and lifetime with increasing rotational angular momentum in each excited vibronic level. This behavior is analogous to that observed in SiH2 and GeH2 and is suggested to lead to the formation of ground state tin atoms and hydrogen molecules.

Introducing Machine Learning Concepts with WEKA.

This chapter presents an introduction to data mining with machine learning. It gives an overview of various types of machine learning, along with some examples. It explains how to download, install, and run the WEKA data mining toolkit on a simple data set, then proceeds to explain how one might approach a bioinformatics problem. Finally, it includes a brief summary of machine learning algorithms for other types of data mining problems, and provides suggestions about where to find additional information.

A VapBC toxin-antitoxin module is a posttranscriptional regulator of metabolic flux in mycobacteria.

The largest family of toxin-antitoxin (TA) modules are encoded by the vapBC operons, but their roles in bacterial physiology remain enigmatic. Microarray analysis in Mycobacterium smegmatis overexpressing VapC/VapBC revealed a high percentage of downregulated genes with annotated roles in carbon transport and metabolism, suggesting that VapC was targeting specific metabolic mRNA transcripts. To validate this hypothesis, purified VapC was used to identify the RNA cleavage site in vitro. VapC had RNase activity that was sequence specific, cleaving single-stranded RNA substrates at AUAU and AUAA in vitro and in vivo (viz., MSMEG_2121 to MSMEG_2124). A bioinformatic analysis of these regions suggested that an RNA hairpin 3' of the AUA(U/A) motif is also required for efficient cleavage. VapC-mediated regulation in vivo was demonstrated by showing that MSMEG_2124 (dhaF) and MSMEG_2121 (dhaM) were upregulated in a ΔvapBC mutant growing on glycerol. The ΔvapBC mutant had a specific rate of glycerol consumption that was 2.4-fold higher than that of the wild type during exponential growth. This increased rate of glycerol consumption was not used for generating bacterial biomass, suggesting that metabolism by the ΔvapBC mutant was uncoupled from growth. These data suggest a model in which VapC regulates the rate of glycerol utilization to match the anabolic demands of the cell, allowing for fine-tuning of the catabolic rate at a posttranscriptional level.

State-to-state rotational relaxation rate constants for CO+Ne from IR-IR double-resonance experiments: comparing theory to experiment.

IR-IR double-resonance experiments were used to study the state-to-state rotational relaxation of CO with Ne as a collision partner. Rotational levels in the range Ji=2-9 were excited and collisional energy transfer of population to the levels Jf=2-8 was monitored. The resulting data set was analyzed by fitting to numerical solutions of the master equation. State-to-state rate constant matrices were generated using fitting law functions. Fitting laws based on the modified exponential gap (MEG) and statistical power exponential gap (SPEG) models were used; the MEG model performed better than the SPEG model. A rate constant matrix was also generated from scattering calculations that employed the ab initio potential energy surface of McBane and Cybulski [J. Chem. Phys. 110, 11 734 (1999)]. This theoretical rate constant matrix yielded kinetic simulations that agreed with the data nearly as well as the fitted MEG model and was unique in its ability to reproduce both the rotational energy transfer and pressure broadening data for Ne-CO. The theoretical rate coefficients varied more slowly with the energy gap than coefficients from either of the fitting laws.

State-to-state rotational rate constants for CO + He: infrared double resonance measurements and simulation of the data using the SAPT theoretical potential energy surface.

An extensive data set of 54 time-resolved pump-probe measurements was used to examine CO + He rotational energy transfer within the CO v = 2 rotational manifold. Rotational levels in the range Ji = 2-9 were excited and collisional energy transfer of population to the levels Jf = 1-10 was monitored. The resulting data set was analyzed by fitting to numerical solutions of the master equation. State-to-state rate constant matrices were generated using fitting law functions and ab initio theoretical calculations that employed the SAPT potential energy surface of Heijmen et al. [J. Chem. Phys. 107, 9921 (1997)]. Fitting laws based on the modified exponential gap (MEG), statistical power exponential gap (SPEG), and energy corrected sudden with exponential power (ECS-EP) models all yielded acceptable simulations of the kinetic data, as did the theoretical rate constants. However, the latter were unique in their ability to reproduce both our kinetic data and the pressure broadening coefficients for CO + He. These results provide an impressive demonstration of the quality of the symmetry adapted perturbation theory (SAPT) potential energy surface.