ABSTRACT
Here, we characterized the complete genome of the Siphoviridae BiggityBass, a lytic subcluster DR bacteriophage infecting Gordonia terrae CAG3. Its 63.2-kb genome contains 84 protein-coding genes, of which 40 could be assigned a putative function. BiggityBass is related most closely to AnClar and Yago84 with 90.61% and 90.52% nucleotide identity, respectively.
ABSTRACT
Four subcluster L2 mycobacteriophages, Finemlucis, Miley16, Wilder, and Zakai, that infect Mycobacterium smegmatis mc2155 were isolated. The four phages are closely related to each other and code for 12 to 14 tRNAs and 130 to 132 putative protein-coding genes, including tyrosine integrases, cro, immunity repressors, and excise genes involved in the establishment of lysogeny.
ABSTRACT
Phenotypic plasticity, the ability for a single genotype to generate different phenotypes in response to environmental conditions, is biologically ubiquitous, and yet almost nothing is known of the developmental mechanisms that regulate the extent of a plastic response. In particular, it is unclear why some traits or individuals are highly sensitive to an environmental variable while other traits or individuals are less so. Here we elucidate the developmental mechanisms that regulate the expression of a particularly important form of phenotypic plasticity: the effect of developmental nutrition on organ size. In all animals, developmental nutrition is signaled to growing organs via the insulin-signaling pathway. Drosophila organs differ in their size response to developmental nutrition and this reflects differences in organ-specific insulin-sensitivity. We show that this variation in insulin-sensitivity is regulated at the level of the forkhead transcription factor FOXO, a negative growth regulator that is activated when nutrition and insulin signaling are low. Individual organs appear to attenuate growth suppression in response to low nutrition through an organ-specific reduction in FOXO expression, thereby reducing their nutritional plasticity. We show that FOXO expression is necessary to maintain organ-specific differences in nutritional-plasticity and insulin-sensitivity, while organ-autonomous changes in FOXO expression are sufficient to autonomously alter an organ's nutritional-plasticity and insulin-sensitivity. These data identify a gene (FOXO) that modulates a plastic response through variation in its expression. FOXO is recognized as a key player in the response of size, immunity, and longevity to changes in developmental nutrition, stress, and oxygen levels. FOXO may therefore act as a more general regulator of plasticity. These data indicate that the extent of phenotypic plasticity may be modified by changes in the expression of genes involved in signaling environmental information to developmental processes.
Subject(s)
Drosophila Proteins/genetics , Drosophila Proteins/metabolism , Drosophila melanogaster/growth & development , Forkhead Transcription Factors/genetics , Forkhead Transcription Factors/metabolism , Insulin/genetics , Insulin/metabolism , Nutritional Physiological Phenomena/genetics , Organ Size/genetics , Animals , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Gene Expression Regulation, Developmental , Gene-Environment Interaction , Genitalia/growth & development , Genitalia/metabolism , Immunity/genetics , Longevity/genetics , Nutrigenomics , Organ Specificity/genetics , Phenotype , Signal TransductionABSTRACT
Foi analisado um fragmento de 808 pares de base do gene mitocondrial citocromo oxidase I (COI) para 15 espécies de Anastrepha: 12 pertencentes ao grupo fraterculus, uma espécie sem grupo definido e duas como grupo externo. As relações filogenéticas entre os táxons incluídos foram inferidas pelos métodos de "neighbor-joining" e máxima parcimônia. A distância genética média (Jukes-Cantor) entre as espécies foi 0,033 ± 0,006, tendo o nível de divergência das seqüências variado de 0,0 a 0,083. Os resultados do estudo com o COI indicaram a inclusão de A. acris Stone, espécie sem grupo morfologicamente definido, no grupo fraterculus. A inclusão de A. barbiellinii Lima no grupo fraterculus e a monifilia do referido grupo são também discutidas. Além disso, a presença de múltiplos conjuntos gênicos na espécie nominal A. fraterculus (Wiedemann) e a não-monofilia de A.fraterculus são corroboradas pelos dados obtidos no presente estudo. As espécies A. amita Zucchi, A. turpiniae Stone e A. zenildae Zucchi foram analisadas geneticamente pela primeira vez.
A fragment of 808 base pairs within the mtDNA gene cytochrome oxidase I (COI) was analyzed for 15 species of Anastrepha: 12 within the fraterculus group, one unplaced species and two outgroups. Phylogenetic relationships among the included taxa were inferred using neighbor-joining and maximum parsimony methods. The average Jukes-Cantor genetic distance among the species was 0.033±0.006 and the level of sequence divergence ranged from 0.0 to 0.083. Our results of COI indicate the placement of A. acris Stone, an unplaced species, in the fraterculus group. The membership of A. barbiellinii Lima in the fraterculus group and the monophyly of the aforementioned group are also discussed. Moreover, the presence of multiple gene pools in the nominal species A. fraterculus (Wiedemann) and the nonmonophyly of A. fraterculus are corroborated by data obtained in our study. The species A. amita Zucchi, A. turpiniae Stone and A. zenildae Zucchi were genetically studied for the first time.
