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1.
Nat Commun ; 6: 5860, 2015 Jan 06.
Article in English | MEDLINE | ID: mdl-25562840

ABSTRACT

Azobenzene, a versatile and polymorphic molecule, has been extensively and successfully used for photoswitching applications. The debate over its photoisomerization mechanism leveraged on the computational scrutiny with ever-increasing levels of theory. However, the most resolved absorption spectrum for the transition to S1(nπ*) has not followed the computational advances and is more than half a century old. Here, using jet-cooled molecular beam and multiphoton ionization techniques we report the first high-resolution spectra of S1(nπ*) and S2(ππ*). The photophysical characterization reveals directly the structural changes upon excitation and the timescales of dynamical processes. For S1(nπ*), we find that changes in the hybridization of the nitrogen atoms are the driving force that triggers isomerization. In combination with quantum chemical calculations we conclude that photoisomerization occurs along an inversion-assisted torsional pathway with a barrier of ~2 kcal mol(-1). This methodology can be extended to photoresponsive molecular systems so far deemed non-accessible to high-resolution spectroscopy.

2.
Phys Rev Lett ; 111(15): 153002, 2013 Oct 11.
Article in English | MEDLINE | ID: mdl-24160595

ABSTRACT

The best-known property of superfluid helium is the vanishing viscosity that objects experience while moving through the liquid with speeds below the so-called critical Landau velocity. This critical velocity is generally considered a macroscopic property as it is related to the collective excitations of the helium atoms in the liquid. In the present work we determine to what extent this concept can still be applied to nanometer-scale, finite size helium systems. To this end, atoms and molecules embedded in helium nanodroplets of various sizes are accelerated out of the droplets by means of optical excitation, and the speed distributions of the ejected particles are determined. The measurements reveal the existence of a critical velocity in these systems, even for nanodroplets consisting of only a thousand helium atoms. Accompanying theoretical simulations based on a time-dependent density functional description of the helium confirm and further elucidate this experimental finding.

3.
J Phys Chem B ; 117(17): 4798-805, 2013 May 02.
Article in English | MEDLINE | ID: mdl-23574393

ABSTRACT

UV excitation and IR absorption spectroscopy on jet-cooled molecules is used to study the conformational heterogeneity of methyl 4-hydroxycinnamate, a model chromophore of the Photoactive Yellow Protein (PYP), and to determine the spectroscopic properties of the various conformers. UV-UV depletion spectroscopy identifies four different species with distinct electronic excitation spectra. Quantum chemical calculations argue that these species are associated with different conformers involving the s-cis/s-trans configuration of the ester with respect to the propenyl C-C single bond and the syn/anti orientation of the phenolic OH group. IR-UV hole-burning spectroscopy is used to record their IR absorption spectra in the fingerprint region. Comparison with IR absorption spectra predicted by quantum chemical calculations provides vibrational markers for each of the conformers, on the basis of which each of the species observed with UV-UV depletion spectroscopy is assigned. Although both DFT and wave function methods reproduce experimental frequencies, we find that calculations at the MP2 level are necessary to obtain agreement with experimentally observed intensities. To elucidate the role of the environment, we compare the IR spectra of the isolated conformers with IR spectra of methyl 4-hydroxycinnamate-water clusters, and with IR spectra of methyl 4-hydroxycinnamate in solution.


Subject(s)
Cinnamates/chemistry , Gases/chemistry , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Halorhodospira halophila/metabolism , Isomerism , Molecular Conformation , Photoreceptors, Microbial/chemistry , Photoreceptors, Microbial/metabolism , Quantum Theory , Spectrophotometry, Infrared , Spectrophotometry, Ultraviolet , Water/chemistry
4.
J Phys Chem A ; 115(34): 9399-410, 2011 Sep 01.
Article in English | MEDLINE | ID: mdl-21332230

ABSTRACT

The photophysics of a prototypical cross-conjugated π-system, 1,1'-diphenylethylene, have been studied using high-resolution resonance enhanced multiphoton ionization excitation spectroscopy and zero kinetic energy photoelectron spectroscopy, in combination with advanced ab initio calculations. We find that the excitation spectrum of S(1) displays extensive vibrational progressions that we identify to arise from large changes in the torsional angles of the phenyl rings upon electronic excitation. The extensive activity of the antisymmetric inter-ring torsional vibration provides conclusive evidence for a loss of symmetry upon excitation, leading to an inequivalence of the two phenyl rings. Nonresonant zero kinetic energy photoelectron spectroscopy from the ground state of the neutral molecule to the ground state of the radical cation, on the other hand, demonstrates that upon ionization symmetry is retained, and that the geometry changes are considerably smaller. Apart from elucidating how removal of an electron affects the structure of the molecule, these measurements provide an accurate value for the adiabatic ionization energy (65274 ± 1 cm(-1) (8.093 eV)). Zero kinetic energy photoelectron spectra obtained after excitation of vibronic levels in S(1) confirm these conclusions and provide us with an extensive atlas of ionic vibronic energy levels. For higher excitation energies the excitation spectrum of S(1) becomes quite congested and shows unexpected large intensities. Ab initio calculations strongly suggest that this is caused by a conical intersection between S(1) and S(2).

5.
Phys Chem Chem Phys ; 13(10): 4393-9, 2011 Mar 14.
Article in English | MEDLINE | ID: mdl-21246114

ABSTRACT

High-resolution Resonance Enhanced MultiPhoton Ionization (REMPI) and Laser Induced Fluorescence (LIF) excitation spectra of jet-cooled methyl-4-hydroxycinnamate, methyl-4-OD-cinnamate, and of their water clusters have been recorded. Whereas water complexation leads to significant linewidth narrowing, isotopic substitution does for all practical purposes not influence the excited-state dynamics. In this light, we evaluate two previously proposed decay channels of the photoexcited ππ* state involving the dissociative πσ* state (analogous to phenol) and involving the optically dark nπ* state (as concluded for para-coumaric acid). To come to an unambiguous interpretation of the REMPI studies, it has been necessary to determine ionization thresholds. For methyl-4-hydroxycinnamate and its water cluster values of 8.078 and 7.636 eV have been found. Apart from the electronic excitation studies, IR absorption studies have been performed as well. These studies provide important vibrational markers for the assignment of the various conformations that are present under molecular beam conditions, and offer a direct measure of the influence of hydrogen bonding on the properties of the hydroxyl group.


Subject(s)
Cinnamates/chemistry , Water/chemistry , Deuterium/chemistry , Lasers , Molecular Conformation , Photons , Spectrometry, Fluorescence
6.
J Phys Chem B ; 115(5): 1275-81, 2011 Feb 10.
Article in English | MEDLINE | ID: mdl-21208001

ABSTRACT

We report on the results of high-resolution spec-troscopic studies on the 4-hydroxystyrene-CO(2) cluster. We show that these clusters are generated upon heating of para-coumaric acid, the chromophore of the photoactive yellow protein (PYP), as the result of a thermal decarboxylation process. Since the mass of the cluster and the starting material are the same, standard mass-resolved multiphoton ionization spectroscopic methods do not suffice to distinguish these clusters from para-coumaric acid. Instead, more advanced methods that include various UV and IR depletion methods need to be applied. These methods, in combination with quantum chemical calculations, enable us to unravel the structural and spectroscopic properties of 4-hydroxystyrene-CO(2) as well as of its hydrate, 4-hydroxystyrene-CO(2)-H(2)O.


Subject(s)
Carbon Dioxide/chemistry , Coumaric Acids/chemistry , Phenols/chemistry , Bacterial Proteins/chemistry , Decarboxylation , Hot Temperature , Photoreceptors, Microbial/chemistry , Spectrophotometry, Infrared , Vibration
7.
J Nanosci Nanotechnol ; 10(11): 7149-53, 2010 Nov.
Article in English | MEDLINE | ID: mdl-21137885

ABSTRACT

Physical and chemical properties of nanoparticles are known to be subject to the surface factors. For their biological/biomedical applications, typically, surface of the nanoparticles has to be modified which inevitably affects their performance. In this work we have studied the interaction between the surface related organic vibrational modes and the luminescent centers--rare earth ions--in one of the most efficient luminescence upconversion nanosystems--NaYF4. Specifically, the surface quenching centers, the surface related luminescent centers, as well as the role of shell properties, are investigated spectroscopically. Our results demonstrate that the surface related high-frequency vibrational modes can be critical to the spectral properties of the nanosystems once the surface is not well separated from the discrete luminescent centers.

8.
J Am Chem Soc ; 132(40): 14086-91, 2010 Oct 13.
Article in English | MEDLINE | ID: mdl-20853829

ABSTRACT

Infrared spectroscopy provides a means to determine the intrinsic geometrical structures of molecules. Here we present a novel spectroscopic method that uses superfluid helium nanodroplets to record IR spectra of cold molecular ions, in this particular case aniline cations. The method is based on the detection of ions that are ejected from the helium droplets following vibrational excitation of these ions. We find that spectra can be recorded with a high sensitivity and that they exhibit only a small matrix shift. The widths of the individual transitions depend on the excited vibrational level and are thought to be related to the interaction of the ion with the surrounding helium solvent shells.

9.
Phys Chem Chem Phys ; 12(48): 15600-6, 2010 Dec 28.
Article in English | MEDLINE | ID: mdl-20676448

ABSTRACT

High-resolution absorption spectra of adenine, 9-methyladenine and 2-aminopurine in helium nanodroplets have been recorded. In contrast to molecular beam experiments, large variations in linewidths are observed for adenine and 9-methyladenine. At the same time, the spectrum of 2-aminopurine remains sharp upon solvation in helium droplets. The line broadening observed for adenine and 9-methyladenine is attributed to a significant decrease of the lifetime of the (1)L(b)(ππ*) state and of (1)nπ* levels vibronically coupled to this state. The origin of the lifetime reduction is argued to be related to the increased accessibility of the (1)nπ*/(1)L(b)(ππ*) conical intersection upon solvation of these molecules in liquid helium.


Subject(s)
2-Aminopurine/chemistry , Absorption , Adenine/analogs & derivatives , Adenine/chemistry , Helium/chemistry , Spectrum Analysis/methods , 2-Aminopurine/radiation effects , Adenine/radiation effects , Chemical Phenomena , Molecular Structure , Solvents/chemistry
10.
J Am Chem Soc ; 132(18): 6315-7, 2010 May 12.
Article in English | MEDLINE | ID: mdl-20397707

ABSTRACT

We report on the first successful high-resolution spectroscopic studies on isolated para-coumaric acid, the chromophore of the photoactive yellow protein which has become a model system for studying biological light-induced signal transduction. Employing various double-resonance multiphoton ionization techniques in combination with mass-resolved ion detection and the results of quantum chemical calculations, we identify three conformations the molecule can adopt under our experimental conditions. The vibrational activity in the excitation spectra allows us to conclude that in the Franck-Condon region accessed from the ground state S(1) is the V'(pipi*) state. Interestingly, we find considerable out-of-plane vibrational activity, indicating that the molecule adopts a nonplanar geometry in S(1). The ionization requirements show that after excitation rapid internal conversion takes place to a lower-lying npi* state. Such a state has been postulated by ab initio calculations on para-coumaric acid and derivatives, but until the present study no direct evidence had been found for its presence.

11.
J Am Chem Soc ; 131(36): 12902-3, 2009 Sep 16.
Article in English | MEDLINE | ID: mdl-19705842

ABSTRACT

Ultrahigh-resolution spectroscopic studies have been performed to elucidate the conformational landscape of the succinamide-based thread 1 that is frequently employed in mechanically interlocked molecular assemblies. We show how dissolving single molecules into a helium nanodroplet enables us to resolve the broad absorption spectrum--which is normally observed--into the separate contributions of individual conformers that are populated under the employed experimental conditions. Excellent agreement is obtained with the results of molecular dynamics calculations. The absorption spectrum of each conformer reveals a splitting of the zero-phonon resonance that is different for each conformer and could thus serve as a spectral signature.

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