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1.
Cochrane Database Syst Rev ; (3): CD006177, 2007 Jul 18.
Article in English | MEDLINE | ID: mdl-17636830

ABSTRACT

BACKGROUND: In recent years there has been a rise in the participation rate of women in employment. Some may become pregnant while in employment and subsequently deliver their babies. Most may decide to return early to work after giving birth for various reasons. Unless these mothers get support from their employers and fellow employees, they might give up breastfeeding when they return to work. As a result, the duration and exclusivity of breastfeeding to the recommended age of the babies would be affected. Workplace environment can play a positive role to promote breastfeeding. For women going back to work, various types of workplace support interventions are available and this should not be ignored by employers. Notably, promoting breastfeeding in a workplace may have benefits for the women, the baby and also the employer. OBJECTIVES: To assess the effectiveness of workplace interventions to support and promote breastfeeding among women returning to paid work after the birth of their children, and its impact on process outcomes pertinent to employees and employers. SEARCH STRATEGY: We searched the Cochrane Pregnancy and Childbirth Group's Trials Register (November 2006), CINAHL (1982 to November week 1 2006), LILACS (2 August 2006), Social Services Abstracts (1979 to November 2006), Sociological Abstracts (1952 to November 2006), Australian Public Affairs Information Service (2003 to 2006), Australian Family and Society Abstracts (2003 to 2006), International Bibliography of the Social Sciences (1951 to 2006), ProQuest Social Science Journals (1994 to 2006), Middle Eastern and Central Asian Studies (1900 to 2006) and the Campbell Collaboration Register (C2-SPECTR) (November 2006). SELECTION CRITERIA: Two authors independently assessed all identified studies for randomised controlled trials and quasi-randomised controlled trials that compared workplace interventions with no intervention or two or more workplace interventions against each other. DATA COLLECTION AND ANALYSIS: Two authors planned to evaluate the methodological quality of the eligible trials and extract data. MAIN RESULTS: There were no randomised controlled trials or quasi-randomised controlled trials identified. AUTHORS' CONCLUSIONS: No trials have evaluated the effectiveness of workplace interventions in promoting breastfeeding among women returning to paid work after the birth of their child. The impact of such intervention on process outcomes is also unknown. Randomised controlled trials are required to establish the benefits of various types of workplace interventions to support, encourage and promote breastfeeding among working mothers.


Subject(s)
Breast Feeding , Women, Working , Workplace , Female , Humans , Program Evaluation
2.
Bone ; 41(2): 181-7, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17532282

ABSTRACT

Maternal ethanol intake during pregnancy results in impairments in general growth and skeletal development in the offspring. We have previously shown that ethanol retards skeletal ossification at doses lower than those that affect growth. Moreover, skeletal sites vary in their sensitivity to ethanol effects, with more severe effects occurring in bones that undergo a greater proportion of their development in utero. Taken together, these data suggest that ethanol has specific effects on bone development, and that later stages in the ossification process may be particularly affected. Such effects could have important implications for the offspring's long-term bone health, as studies suggest that the intrauterine environment can program the skeleton. The present study examined the histological stages of bone development to determine if prenatal ethanol exposure alters the morphological development of the growth plate in the fetal rat. Rats were fed a liquid diet containing ethanol (Ethanol, E group), or without ethanol (Pair-Fed, PF, or Control, C groups) for 6 weeks: 3 weeks prior to breeding and during 3 weeks of pregnancy. Fetal tibiae were fixed, decalcified and stained for histological analysis on day 21 of gestation. Maternal ethanol intake resulted in a significant decrease in fetal total bone and diaphysis lengths, compared with tibiae from PF and C fetuses. Although the lengths of the epiphyses were not affected, ethanol disrupted the organization of the histological zones within the epiphyses. Prenatal ethanol exposure decreased the length of the resting zone, but increased the length of the hypertrophic zone. Enlargement of the hypertrophic zone is consistent with an effect of ethanol on the later stages of bone development; however, ethanol's effect on the resting zone indicates that earlier stages of bone development may also be disrupted. The functional significance of these morphological changes to long-term bone health remains to be determined.


Subject(s)
Bone Development/drug effects , Ethanol/pharmacology , Fetus , Osteogenesis/drug effects , Prenatal Exposure Delayed Effects , Animals , Bone Development/physiology , Female , Fetus/drug effects , Fetus/physiology , Osteogenesis/physiology , Pregnancy , Rats , Rats, Sprague-Dawley , Tibia/anatomy & histology , Tibia/drug effects
3.
J Comput Aided Mol Des ; 15(8): 697-708, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11718475

ABSTRACT

The brain-blood partition coefficient (log BB) is a determining factor for the efficacy of central nervous system acting drugs. Since large-scale experimental determination of log BB is unfeasible, alternative evaluation methods based on theoretical models are desirable. Toward this direction, we propose a model that correlates log BB with physically significant descriptors for 76 structurally diverse molecules. We employ Monte Carlo simulations of the compounds in water to calculate such properties as the solvent-accessible surface area (SASA), the number of hydrogen bond donors and acceptors, the solute dipole, and the hydrophilic, hydrophobic and amphiphilic components of SASA. The physically significant descriptors are identified and a quantitative structure-prediction relationship is constructed that predicts log BB. This work demonstrates that computer simulations can be employed in a semi-empirical framework to build predictive QSPRs that shed light on the physical mechanism of biomolecular phenomena.


Subject(s)
Blood-Brain Barrier/physiology , Models, Biological , Animals , Computer Simulation , Drug Design , Humans , Hydrogen Bonding , In Vitro Techniques , Monte Carlo Method , Quantitative Structure-Activity Relationship , Solvents , Thermodynamics , Water
4.
J Biol Chem ; 274(16): 11110-4, 1999 Apr 16.
Article in English | MEDLINE | ID: mdl-10196195

ABSTRACT

Triclosan is a broad-spectrum antibacterial agent that inhibits bacterial fatty acid synthesis at the enoyl-acyl carrier protein reductase (FabI) step. Resistance to triclosan in Escherichia coli is acquired through a missense mutation in the fabI gene that leads to the expression of FabI[G93V]. The specific activity and substrate affinities of FabI[G93V] are similar to FabI. Two different binding assays establish that triclosan dramatically increases the affinity of FabI for NAD+. In contrast, triclosan does not increase the binding of NAD+ to FabI[G93V]. The x-ray crystal structure of the FabI-NAD+-triclosan complex confirms that hydrogen bonds and hydrophobic interactions between triclosan and both the protein and the NAD+ cofactor contribute to the formation of a stable ternary complex, with the drug binding at the enoyl substrate site. These data show that the formation of a noncovalent "bi-substrate" complex accounts for the effectiveness of triclosan as a FabI inhibitor and illustrates that mutations in the FabI active site that interfere with the formation of a stable FabI-NAD+-triclosan ternary complex acquire resistance to the drug.


Subject(s)
Fatty Acids/antagonists & inhibitors , Oxidoreductases/antagonists & inhibitors , Triclosan/pharmacology , Enoyl-(Acyl-Carrier-Protein) Reductase (NADH) , Fatty Acids/biosynthesis , Models, Molecular , Molecular Structure , Mutation, Missense , NAD/metabolism , Oxidoreductases/genetics , Oxidoreductases/metabolism , Protein Binding , Triclosan/chemistry , Triclosan/metabolism
5.
Biochemistry ; 37(45): 15631-7, 1998 Nov 10.
Article in English | MEDLINE | ID: mdl-9843367

ABSTRACT

Mutated, tumorigenic Ras is present in a variety of human tumors. Compounds that inhibit tumorigenic Ras function may be useful in the treatment of Ras-related tumors. The interaction of a novel GDP exchange inhibitor (SCH-54292) with the Ras-GDP protein was studied by NMR spectroscopy. The binding of the inhibitor to the Ras protein was enhanced at low Mg2+ concentrations, which enabled the preparation of a stable complex for NMR study. To understand the enhanced inhibitor binding and the increased GDP dissociation rates of the Ras protein, the conformational changes of the Ras protein at low Mg2+ concentrations was investigated using two-dimensional 1H-15N HSQC experiments. The Ras protein existed in two conformations in slow exchange on the NMR time scale under such conditions. The conformational changes mainly occurred in the GDP binding pocket, in the switch I and the switch II regions, and were reversible. The Ras protein resumed its regular conformation after an excess amount of Mg2+ was added. A model of the inhibitor in complex with the Ras-GDP protein was derived from intra- and intermolecular NOE distance constraints, and revealed that the inhibitor bound to the critical switch II region of the Ras protein.


Subject(s)
Glucosides/metabolism , Guanosine Diphosphate/metabolism , Proteins/antagonists & inhibitors , Sulfonamides/metabolism , ras Proteins/metabolism , Amino Acid Sequence , Binding Sites , Computer Simulation , Glucosides/chemistry , Guanine Nucleotide Exchange Factors , Humans , Macromolecular Substances , Magnesium/metabolism , Models, Molecular , Molecular Sequence Data , Monte Carlo Method , Nuclear Magnetic Resonance, Biomolecular , Protein Binding , Protein Conformation , Proteins/chemistry , Sulfonamides/chemistry , ras Guanine Nucleotide Exchange Factors
6.
J Am Acad Child Adolesc Psychiatry ; 37(7): 767-76, 1998 Jul.
Article in English | MEDLINE | ID: mdl-9666633

ABSTRACT

OBJECTIVE: To reevaluate platelet serotonin (5-HT) levels in autism, measuring and controlling for effects of race and puberty. The specificity of hyperserotonemia for autism versus cognitive impairment is also assessed. METHOD: Platelet 5-HT levels were measured in 77 individuals, aged 2 through 37 years, with autistic disorder; 65 normal controls; and 22 mentally retarded or otherwise cognitively impaired (MR/CI) prepubertal children. Effects of diagnosis, race, and pubertal status were evaluated by analysis of variance in separate pre- and postpubertal groups. 5-HT levels were expressed as ng/mL blood and ng/microL platelet volume. RESULTS: Among prepubertal children, significant effects of diagnosis (ng/mL; F2,109 = 5.9, p = .004) and race (F2,109 = 14.7, p < .0005) were found. Autistic youngsters had significantly higher 5-HT concentrations than controls, although the elevation (25%) was less than typically reported; MR/CI children had levels very similar to those of controls. White children had significantly lower 5-HT levels than black or Latino youngsters, regardless of diagnosis. Diagnosis and race effects were nonsignificant in the postpubertal group. Postpubertal subjects had lower 5-HT concentrations than prepubertal subjects (ng/mL; F1,114 = 28.5, p < .0005). CONCLUSIONS: The data underscore the importance of matching for race and pubertal status in neuropsychiatric research and suggest that the prevalence of hyperserotonemia in autistic individuals may have been overestimated because of a failure to control for both variables. Hyperserotonemia was not found in MR/CI youngsters without autistic features.


Subject(s)
Autistic Disorder/blood , Intellectual Disability/blood , Puberty , Racial Groups , Serotonin/blood , Adolescent , Adult , Autistic Disorder/diagnosis , Biomarkers/blood , Blood Platelets/chemistry , Child , Child, Preschool , Female , Humans , Intellectual Disability/diagnosis , Male
7.
J Biomol NMR ; 11(2): 153-64, 1998 Feb.
Article in English | MEDLINE | ID: mdl-20700826

ABSTRACT

A set of high-resolution three-dimensional solution structures of the Src homology region-2 (SH2) domain of the growth factor receptor-bound protein-2 was determined using heteronuclear NMR spectroscopy. The NMR data used in this study were collected on a stable monomeric protein solution that was free of protein aggregates and proteolysis. The solution structure was determined based upon a total of 1439 constraints, which included 1326 nuclear Overhauser effect distance constraints, 70 hydrogen bond constraints, and 43 dihedral angle constraints. Distance geometry-simulated annealing calculations followed by energy minimization yielded a family of 18 structures that converged to a root-mean-square deviation of 1.09 A for all backbone atoms and 0.40 A for the backbone atoms of the central beta-sheet. The core structure of the SH2 domain contains an antiparallel beta-sheet flanked by two parallel alpha-helices displaying an overall architecture that is similar to other known SH2 domain structures. This family of NMR structures is compared to the X-ray structure and to another family of NMR solution structures determined under different solution conditions.

8.
J Med Chem ; 40(25): 4103-12, 1997 Dec 05.
Article in English | MEDLINE | ID: mdl-9406600

ABSTRACT

Generation of a three-dimensional pharmacophore model (hypothesis) that correlates the biological activity of a series of farnesyl protein transferase (FPT) inhibitors, exemplified by the prototype 1-(4-pyridylacetyl)- 4-(8-chloro-5,6-dihydro-11H-benzo [5,6]cyclohepta[1,2-b]pyridin-11-ylidene)piperidine, Sch 44342, 1, with their chemical structure was accomplished using the three-dimensional quantitative structure-activity relationship (3D-QSAR) software program, Catalyst. On the basis of the in vitro FPT inhibitory activity of a training set of compounds, a five-feature hypothesis containing four hydrophobic and one hydrogen bond acceptor region was generated. Using this hypothesis as a three-dimensional query to search our corporate database identified 718 compounds (hits). Determination of the in vitro FPT inhibitory activity using available compounds from this "hitlist" identified five compounds, representing three structurally novel classes, that exhibited in vitro FPT inhibitory activity, IC50 < or = 5 microM. From these three classes, a series of substituted dihydrobenzothiophenes was selected for further structure-FPT inhibitory activity relationship studies. The results from these studies is discussed.


Subject(s)
Alkyl and Aryl Transferases/antagonists & inhibitors , Enzyme Inhibitors/pharmacology , Databases as Topic , Models, Structural , Structure-Activity Relationship
9.
J Child Psychol Psychiatry ; 38(6): 705-15, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9315980

ABSTRACT

Plasma levels of the hypothalamo-pituitary-adrenal axis hormones beta-endorphin (BE), adrenocorticotropin hormone (ACTH), and cortisol were measured in autistic (N = 48), mentally retarded/cognitively impaired (MR/CI, N = 16), and normal control (N = 26) individuals. Comparison of log transformed data from the three groups revealed that levels of BE and ACTH were significantly higher (p < .05) in the autistic individuals than in normal controls. The higher means in the autistic group were due to significantly higher plasma levels of BE and ACTH, indices of acute stress response, in the more severely affected individuals. The data support the idea that individuals with severe autism have a heightened response to acute stressors rather than chronic hyperarousal or elevated basal stress response system functioning.


Subject(s)
Adrenocorticotropic Hormone/blood , Hydrocortisone/blood , beta-Endorphin/blood , Adolescent , Arousal/physiology , Autistic Disorder/physiopathology , Child , Female , Humans , Hypothalamo-Hypophyseal System/physiopathology , Intellectual Disability/physiopathology , Intelligence/physiology , Male , Pituitary-Adrenal System/physiopathology , Reference Values
10.
Biochemistry ; 36(33): 10006-14, 1997 Aug 19.
Article in English | MEDLINE | ID: mdl-9254595

ABSTRACT

A thermodynamic analysis using isothermal titration calorimetry (ITC) has been performed to examine the binding interaction between the SH2 (Src homology 2) domain of growth factor receptor binding protein 2 (Grb2-SH2) and one of its phosphotyrosine (pY) polypeptide ligands. Interaction of the Shc-derived phosphotyrosine hexapeptide Ac-SpYVNVQ-NH2 with Grb2-SH2 was both enthalpically and entropically favorable (DeltaH = -7.55 kcal mol-1, -TDeltaS = -1.46 kcal mol-1 , DeltaG = -9.01 kcal mol-1, T = 20 degrees C). ITC experiments using five alanine-substituted peptides were performed to examine the role of each side chain in binding. The results were consistent with homology models of the Grb2-SH2-Shc hexapeptide complex which identified several possible hydrogen bonds between Grb2-SH2 and the phosphotyrosine and conserved asparagine(+2) side chains of the Shc hexapeptide. These studies also demonstrated that the hydrophobic valine(+1) side chain contributes significantly to the favorable entropic component of binding. The thermodynamic and structural data are consistent with a Grb2-SH2 recognition motif of pY-hydrophobic-N-X (where X is any amino acid residue). The measured heat capacity of binding (DeltaCp = -146 cal mol-1 K-1) was very similar to computed values using semiempirical estimates (DeltaCp = -106 to -193 cal mol-1 K-1) derived from apolar and polar accessible surface area values calculated from several homology models of the Grb2-SH2-Shc hexapeptide complex. The homology model which most closely reproduced the measured DeltaCp value is also the model which had the lowest RMS deviation from the subsequently determined crystal structure. Calculations based on the thermodynamic data and these semiempirical estimates indicated that the binding event involves burial of nearly comparable apolar (677 A2) and polar (609 A2) surface areas.


Subject(s)
Adaptor Proteins, Signal Transducing , Phosphotyrosine/chemistry , Proteins/chemistry , src Homology Domains , Calorimetry , GRB2 Adaptor Protein , Ligands , Models, Chemical , Protein Conformation , Thermodynamics
11.
Bioorg Med Chem ; 5(5): 817-20, 1997 May.
Article in English | MEDLINE | ID: mdl-9208093

ABSTRACT

MS based methodology employing electrospray ionization (ESI) is described for the detection of ternary complexes in which SCH 54292 or SCH 54341 and GDP are noncovalently bound to oncogenic ras protein. The observed molecular weights of 19,816 and 19,570 Da confirmed the presence of noncovalent complexes of ras-GDP-SCH 54292 and ras-GDP-SCH 54341, respectively. We have also performed selective chemical modification of lysine residues of the ras protein complex followed by enzymatic digestion and on-line LC-ESI MS peptide mapping to determine protein-drug binding topography. There was a good correlation between nucleotide exchange inhibition as determined by the enzyme assay and evidence of complex formation as determined by MS.


Subject(s)
ras Proteins/antagonists & inhibitors , ras Proteins/chemistry , Amino Acid Sequence , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Binding Sites , Drug Evaluation, Preclinical , Glucosides/chemistry , Glucosides/pharmacology , Guanine Nucleotide Exchange Factors , In Vitro Techniques , Macromolecular Substances , Mass Spectrometry/methods , Molecular Sequence Data , Molecular Weight , Peptide Mapping , Proteins/antagonists & inhibitors , Proteins/chemistry , Sulfonamides/chemistry , Sulfonamides/pharmacology , ras Guanine Nucleotide Exchange Factors , ras Proteins/genetics
12.
Bioorg Med Chem ; 5(1): 93-9, 1997 Jan.
Article in English | MEDLINE | ID: mdl-9043661

ABSTRACT

Ras farnesylation by farnesyl protein transferase (FPT) is an intracellular event that facilitates the membrane association of the ras protein and is involved in the signal transduction process. FPT inhibition could be a novel, noncytotoxic method of treating ras dependent tumor growth. We report here three structural classes of 8-chlorobenzocycloheptapyridines as novel, nonpeptidic, nonsulfhydryl FPT inhibitors having antitumor activity in mice when dosed orally. We discuss structural and conformational aspects of these compounds in relation to biological activities as well as a comparison to the conformation of a bound tetrapeptide FPT inhibitor.


Subject(s)
Antineoplastic Agents/pharmacology , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacokinetics , Benzazepines/chemistry , Benzazepines/pharmacokinetics , Benzazepines/pharmacology , Humans , Magnetic Resonance Spectroscopy , Mass Spectrometry , Mice , Piperidines/chemistry , Piperidines/pharmacokinetics , Piperidines/pharmacology , Pyridines/chemistry , Pyridines/pharmacokinetics , Pyridines/pharmacology , Tumor Cells, Cultured
13.
Bioorg Med Chem ; 5(1): 125-33, 1997 Jan.
Article in English | MEDLINE | ID: mdl-9043664

ABSTRACT

The nucleotide exchange process is one of the key activation steps regulating the ras protein. This report describes the development of potent, non-nucleotide, small organic inhibitors of the ras nucleotide exchange process. These inhibitors bind to the ras protein in a previously unidentified binding pocket, without displacing bound nucleotide. This report also describes the development and use of mass spectrometry, NMR spectroscopy and molecular modeling techniques to elucidate the structure of a drug-protein complex, and aid in designing new ras inhibitor targets.


Subject(s)
Proto-Oncogene Proteins p21(ras)/antagonists & inhibitors , Crystallography, X-Ray , Drug Design , Magnetic Resonance Spectroscopy , Proto-Oncogene Proteins p21(ras)/chemistry , Spectrometry, Mass, Fast Atom Bombardment
14.
J Autism Dev Disord ; 25(3): 295-304, 1995 Jun.
Article in English | MEDLINE | ID: mdl-7559294

ABSTRACT

Plasma levels of testosterone and the adrenal androgen dehydroepiandrosterone sulfate (DHEA-S) were measured in male autistic subjects (31 prepubertal, 8 postpubertal), mentally retarded/cognitively impaired subjects (MR, 12 prepubertal), and normal control subjects (NC, 10 prepubertal, 11 postpubertal). Mean levels of plasma testosterone were similar in the postpubertal autistic (4.54 +/- 1.12 ng/ml) and postpubertal NC (5.02 +/- 1.87 ng/ml) groups. Plasma DHEA-S levels in postpubertal autistic (2170 +/- 1020 ng/ml) and postpubertal NC (1850 +/- 777 ng/ml) groups also were not significantly different. Similarly, no significant group differences were seen for testosterone or DHEA-S in the prepubertal autistic, MR, or NC individuals, although prepubertal MR individuals with cerebral palsy did have increased plasma DHEA-S levels compared to age-matched MR or NC individuals. Significant negative correlations were found between testosterone and whole blood serotonin (5-HT) levels in the combined (all subjects, all ages) groups and in the autistic group, suggesting that the effect of puberty on whole blood 5-HT may deserve further study. Data indicate that altered secretion of the androgens is not a common feature of autism. However, abnormalities of adrenal androgen secretion may be present in individuals with cerebral palsy.


Subject(s)
Autistic Disorder/blood , Dehydroepiandrosterone/analogs & derivatives , Testosterone/blood , Adolescent , Adult , Child , Child, Preschool , Dehydroepiandrosterone/blood , Dehydroepiandrosterone Sulfate , Humans , Intellectual Disability/blood , Male , Puberty/blood , Reference Values , Serotonin/blood
15.
Proteins ; 15(2): 183-90, 1993 Feb.
Article in English | MEDLINE | ID: mdl-8441753

ABSTRACT

A novel scheme for the parameterization of a type of "potential energy" function for protein molecules is introduced. The function is parameterized based on the known conformations of previously determined protein structures and their sequence similarity to a molecule whose conformation is to be calculated. Once parameterized, minima of the potential energy function can be located using a version of simulated annealing which has been previously shown to locate global and near-global minima with the given functional form. As a test problem, the potential was parameterized based on the known structures of the rubredoxins from Desulfovibrio vulgaris, Desulfovibrio desulfuricans, and Clostridium pasteurianum, which vary from 45 to 54 amino acids in length, and the sequence alignments of these molecules with the rubredoxin sequence from Desulfovibrio gigas. Since the Desulfovibrio gigas rubredeoxin conformation has also been determined, it is possible to check the accuracy of the results. Ten simulated-annealing runs from random starting conformations were performed. Seven of the 10 resultant conformations have an all-C alpha rms deviation from the crystallographically determined conformation of less than 1.7 A. For five of the structures, the rms deviation is less than 0.8 A. Four of the structures have conformations which are virtually identical to each other except for the position of the carboxy-terminal residue. This is also the conformation which is achieved if the determined crystal structure is minimized with the same potential. The all-C alpha rms difference between the crystal and minimized crystal structures is 0.6 A.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Proteins/chemistry , Amino Acid Sequence , Clostridium/chemistry , Desulfovibrio/chemistry , Models, Chemical , Models, Molecular , Molecular Sequence Data , Molecular Structure , Protein Conformation , Rubredoxins/chemistry , Sequence Homology, Amino Acid , Thermodynamics
16.
Int J Pept Protein Res ; 38(2): 161-8, 1991 Aug.
Article in English | MEDLINE | ID: mdl-1723719

ABSTRACT

The structure of the AMBER potential energy surface of the cyclic tetrapeptide cyclotetrasarcosyl is analyzed as a function of the dimensionality of coordinate space. It is found that the number of local energy minima decreases as the dimensionality of the space increases until some limit at which point equipotential subspaces appear. The applicability of energy embedding methods to finding global energy minima in this type of energy-conformation space is explored. Dimensional oscillation, a computationally fast variant of energy embedding is introduced and found to sample conformation space widely and to do a good job of finding global and near-global energy minima.


Subject(s)
Peptides, Cyclic/chemistry , Peptides/chemistry , Proteins/chemistry , Sarcosine/analogs & derivatives , Computer Simulation , Mathematical Computing , Models, Chemical , Models, Molecular , Sarcosine/chemistry
17.
J Mol Biol ; 217(1): 1-7, 1991 Jan 05.
Article in English | MEDLINE | ID: mdl-1988672

ABSTRACT

We describe a largely automatic procedure for building protein structures from sequence alignments with homologues of known structure. This procedure uses simple rules by which multiple sequence alignments can be translated into distance and chirality constraints, which are then used as input for distance geometry calculations. By this means one obtains an ensemble of conformations for the unknown structure that are compatible with the rules employed, and the differences among these conformations provide an indication of the reliability of the structure prediction. The overall approach is demonstrated here by applying it to several Kazal-type trypsin inhibitors, for which experimentally determined structures are available. On the basis of our experience with these test problems, we have further predicted the conformation of the human pancreatic secretory trypsin inhibitor, for which no experimentally determined structure is presently available.


Subject(s)
Models, Molecular , Pancreas/metabolism , Protein Conformation , Sequence Alignment , Trypsin Inhibitor, Kazal Pancreatic/chemistry , Algorithms , Amino Acid Sequence , Humans , Sequence Homology, Nucleic Acid
18.
Biopolymers ; 29(10-11): 1479-89, 1990.
Article in English | MEDLINE | ID: mdl-2361157

ABSTRACT

A general method is presented for constructing a potential function for approximate conformational calculations on globular proteins. The method involves solving a nonlinear program that seeks to adjust the potential's parameters in such a way that a minimum near the native remains a minimum and does not move far away, while any alternative minima shift so as to remain local minima but eventually rise higher than the level of the near-native minimum. Although the potential trades computational speed for detail by representing each amino acid residue as only a single point, correct secondary structural preferences and reasonable tertiary folding can be built into the potential in an entirely routine way. The potential has been parameterized to agree with the crystal structure of avian pancreatic polypeptide (having 36 residues) in the sense that the lowest minimum found (-407 arbitrary units) is reasonably close to the native (1.8 A rms interresidue distance deviation). In contrast, the lowest nonnative conformation found after extensive searches by a variety of methods was -399 units and 7.5 A away. Such potentials may prove to be useful in predicting approximate tertiary structure from amino acid sequence, if they can be generalized to apply to more than one protein.


Subject(s)
Protein Conformation , Methods
19.
J Am Acad Child Adolesc Psychiatry ; 29(1): 123-6, 1990 Jan.
Article in English | MEDLINE | ID: mdl-2295564

ABSTRACT

DSM-III and DSM-III-R diagnoses of 112 developmentally disordered preschool children were compared. There was no significant difference between the DSM-III and DSM-III-R diagnosis of the inclusive category of pervasive developmental disorder, but nearly twice as many cases (58) were diagnosed as autistic disorder by DSM-III-R criteria as were diagnosed as infantile autism (31) by DSM-III. Thirty children met both DSM-III and DSM-III-R criteria for autism (IA/AD) and 23 received a DSM-III diagnosis of atypical PDD (A-PDD) and a DSM-III-R diagnosis of AD (A-PDD/AD). All of the IA/AD children and none of the A-PDD/AD group displayed a marked lack of awareness of others. DSM-III-R criteria have specifically broadened the concept of autism to include children who, although socially impaired, are not pervasively unresponsive to others.


Subject(s)
Autistic Disorder/diagnosis , Child Development Disorders, Pervasive/diagnosis , Child, Preschool , Humans , Infant , Interpersonal Relations
20.
J Am Acad Child Adolesc Psychiatry ; 28(2): 195-9, 1989 Mar.
Article in English | MEDLINE | ID: mdl-2925572

ABSTRACT

An array of six photographs of the same woman was used to assess the ability of 18 autistic, 14 nonautistic mentally retarded, and 18 normal preschool subjects to use affect- and activity-related concepts in the solution of cognitive tasks. The Total Performance Level of the autistic and mentally retarded subjects did not differ significantly. Autistic subjects performed imitation, directed action, and description tasks less well in the affect mode. The findings are consistent with other studies, suggesting an impairment in the expression of emotion in autism.


Subject(s)
Affect , Autistic Disorder/psychology , Cognition , Adolescent , Adult , Child , Child, Preschool , Facial Expression , Humans , Imitative Behavior , Intellectual Disability/psychology
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