Reactions of Azine Anions with Nitrogen and Oxygen Atoms: Implications for Titan's Upper Atmosphere and Interstellar Chemistry.

Azines are important in many extraterrestrial environments, from the atmosphere of Titan to the interstellar medium. They have been implicated as possible carriers of the diffuse interstellar bands in astronomy, indicating their persistence in interstellar space. Most importantly, they constitute the basic building blocks of DNA and RNA, so their chemical reactivity in these environments has significant astrobiological implications. In addition, N and O atoms are widely observed in the ISM and in the ionospheres of planets and moons. However, the chemical reactions of molecular anions with abundant interstellar and atmospheric atomic species are largely unexplored. In this paper, gas-phase reactions of deprotonated anions of benzene, pyridine, pyridazine, pyrimidine, pyrazine, and s-triazine with N and O atoms are studied both experimentally and computationally. In all cases, the major reaction channel is associative electron detachment; these reactions are particularly important since they control the balance between negative ions and free electron densities. The reactions of the azine anions with N atoms exhibit larger rate constants than reactions of corresponding chain anions. The reactions of azine anions with O atoms are even more rapid, with complex product patterns for different reactants. The mechanisms are studied theoretically by employing density functional theory; spin conversion is found to be important in determining some product distributions. The rich gas-phase chemistry observed in this work provides a better understanding of ion-atom reactions and their contributions to ionospheric chemistry as well as the chemical processing that occurs in the boundary layers between diffuse and dense interstellar clouds.

Deprotonated purine dissociation: experiments, computations, and astrobiological implications.

A central focus of astrobiology is the determination of abiotic formation routes to important biomolecules. The dissociation mechanisms of these molecules lend valuable insights into their synthesis pathways. Because of the detection of organic anions in the interstellar medium (ISM), it is imperative to study their role in these syntheses. This work aims to experimentally and computationally examine deprotonated adenine and guanine dissociation in an effort to illuminate potential anionic precursors to purine formation. Collision-induced dissociation (CID) products and their branching fractions are experimentally measured using an ion trap mass spectrometer. Deprotonated guanine dissociates primarily by deammoniation (97%) with minor losses of carbodiimide (HNCNH) and/or cyanamide (NH2CN), and isocyanic acid (HNCO). Deprotonated adenine fragments by loss of hydrogen cyanide and/or isocyanide (HCN/HNC; 90%) and carbodiimide (HNCNH) and/or cyanamide (NH2CN; 10%). Tandem mass spectrometry (MS(n)) experiments reveal that deprotonated guanine fragments lose additional HCN and CO, while deprotonated adenine fragments successively lose HNC and HCN. Every neutral fragment observed in this study has been detected in the ISM, highlighting the potential for nucleobases such as these to form in such environments. Lastly, the acidity of abundant fragment ions is experimentally bracketed. Theoretical calculations at the B3LYP/6-311++G(d,p) level of theory are performed to delineate the mechanisms of dissociation and analyze the energies of reactants, intermediates, transition states, and products of these CID processes.

Gas-phase reactions of CF(+) with molecules of interstellar relevance.

We have studied the gas-phase reactions of CF(+) with 24 neutral species. Reaction rate constants and product branching fractions are measured at 298 K using a flowing afterglow-selected ion flow tube. Experimental work is supported by computational chemistry calculations to provide insight into the reactivity of classes of neutral molecules. Reactions of CF(+) with small triatomic species and oxygen-containing organic molecules produce the stable molecule CO. The product branching fractions are discussed, and the potential energy surfaces for a few representative reactions are examined. CF(+) is highly reactive with complex molecules and will likely be destroyed in dense environments in the interstellar medium. However, the lack of reactivity with small diatomic molecules will likely enable its survival in diffuse regions.

Anionic derivatives of uracil: fragmentation and reactivity.

Uracil is an essential biomolecule for terrestrial life, yet its prebiotic formation mechanisms have proven elusive for decades. Meteorites have been shown to contain uracil and the interstellar abundance of aromatic species and nitrogen-containing molecules is well established, providing support for uracil's presence in the interstellar medium (ISM). The ion chemistry of uracil may provide clues to its prebiotic synthesis and role in the origin of life. The fragmentation of biomolecules provides valuable insights into their formation. Previous research focused primarily on the fragmentation and reactivity of cations derived from uracil. In this study, we explore deprotonated uracil-5-carboxylic acid and its anionic fragments to elucidate novel reagents of uracil formation and to characterize the reactivity of uracil's anionic derivatives. The structures of these fragments are identified through theoretical calculations, further fragmentation, experimental acidity bracketing, and reactivity with several detected and potential interstellar species (SO2, OCS, CS2, NO, N2O, CO, NH3, O2, and C2H4). Fragmentation is achieved through collision induced dissociation (CID) in a commercial ion trap mass spectrometer, and all reaction rate constants are measured using a modification of this instrument. Experimental data are supported by theoretical calculations at the B3LYP/6-311++G(d,p) level of theory. Lastly, the astrochemical implications of the observed fragmentation and reaction processes are discussed.

Computational studies of gas phase reactions of carbon chain anions with N and O atoms.

Experimental studies of gas phase reactions of carbanions with N and O atoms have been reported previously to understand ion chemistry relevant to the interstellar medium. In all cases reactions of anions with O atoms exhibit larger reaction rate constants compared to the corresponding N atom reactions. In addition, the open-shell carbon chain anions exhibit higher reactivities than the corresponding closed-shell species in N atom reactions, whereas similar reactivities were observed for both open and closed-shell anions in O atom reactions. These trends are investigated by the current theoretical study of the reactions of HC(n)(-)(n = 2, 4, and 6) and C(n)(-) (n = 2, 4-7) with N and O atoms. Our results indicate that spin-forbidden processes are the probable pathways in reactions of closed-shell anions HC(n)(-) with N atoms, and spin conversion limits the reaction efficiency. In reactions of open-shell anions C(n)(-) with N atoms, about 50% of the collisions may proceed through spin-allowed barrierless pathways, which results in relatively higher reaction efficiencies than for the closed-shell reactions. For reactions of all anions with O atoms, the spin-allowed barrierless pathways are the only channels, such that all reactions occur with very high efficiencies. This work provides a greater understanding of the influence of spin effects on the reactivities of anion reactions involving N and O atoms that may be important in the interstellar medium.

The influence of spin effects on the gas phase reactions of carbanions with N and O atoms.

Molecular anions have been recently detected in the denser regions of the interstellar medium. However, the chemical reactions of molecular anions with atomic species that are abundant in the ISM remain largely unexplored. This work is an experimental and computational study of CH(2)CN(-), CH(3)CHCN(-), (CH(3))(2)CCN(-), and CH(2)CHO(-) reacting with N and O atoms. In all cases the reactions of anions with O atoms exhibit larger reaction rate constants compared to the corresponding reactions with N atoms. Our study indicates that spin-forbidden reactions are the probable pathways in the reactions with N atoms, whereas spin-allowed reactions are the dominant processes in the reactions with O atoms. The major factor influencing the reaction rate constants of anions with N and O atoms is whether a spin-allowed barrierless pathway exists. The rich chemistry observed in this work provides a greater understanding of the ion-atom reaction processes, as well as some new avenues for further spin chemistry research.

Formation of gas-phase glycine and cyanoacetylene via associative detachment reactions.

The recent discovery of molecular negative ions in the interstellar medium suggests that these species may be reactive intermediates in astrochemical processes. Our recent studies indicate that these anions, despite their high electron binding energies, are reactive with atomic reagents. In this work, we report that two species of interstellar interest, glycine (NH(2)CH(2)COOH) and cyanoacetylene (HC(3)N), can be readily formed by associative detachment of their corresponding deprotonated anions with hydrogen atoms. The reaction rate constants for glycine anion (NH(2)CH(2)CO(2)(-)) and cyanoacetylene anion (C(3)N(-)) with H atom have been measured to be 2.0 +/- 0.5 x10(-10) cm(3) s(-1) and 5.4 +/- 0.2 x 10(-10) cm(3) s(-1), respectively, where the error bars represent one standard deviation of the mean; the estimated total error is +/- 50%. A possible reaction mechanism for chemical conversion of species observed in the interstellar medium is also described.

Ion chemistry in the interstellar medium.

We present an overview of the interstellar medium, including physical and chemical conditions, spectroscopic observations, and current challenges in characterizing interstellar chemistry. Laboratory studies of ion-atom reactions, including experimental approaches and instrumentation, are described. We also tabulate and discuss comprehensive summaries of ion-neutral reactions involving hydrogen, nitrogen, and oxygen atoms that have been studied since Sablier and Rolando's 1993 review.

Collision rate constants for polarizable ions.

Langevin described a model for the interaction between an ion and a neutral nearly a century ago and since then, many modifications have been introduced to adjust for specific circumstances. This work discusses the induced dipole-induced dipole interaction between an ion and a neutral without a permanent dipole and introduces an anisotropic adjustment. A point polarizable ion model (PPI) and an orientation dependent polarizable ion model (ODPI) are discussed and applied to systems where the ion is highly polarizable and the neutral is only weakly polarizable. Significant deviations from classical Langevin rate constants and significant differences between PPI and ODPI are observed.