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1.
Article in French | AIM (Africa) | ID: biblio-1269390

ABSTRACT

Les auteurs rapportent un cas de cyphose cervicale irreductible C2C3 par ossification du ligament inter-epineux deux mois apres un traumatisme en hyperflexion par accident de rugby en hyperflexion. Sur la base d'un bilan radiologique exhaustif; la prise en charge initiale de cette lesion a ete orthopedique chez ce patient age de 14 ans. L'evolution sous traitement orthopedique bien conduit et surveillance reguliere a ete defavorable. Le suivi radiologique a progressivement mis en evidence une irreductibilite de la lesion. L'IRM a objective une alteration des signaux discaux C2C3 et C3C4 motivant une reduction et stabilisation cervicale par arthrodese instrumentee posterieure C2C4


Subject(s)
Adolescent , Kyphosis , Ossification of Posterior Longitudinal Ligament
2.
Rev Chir Orthop Reparatrice Appar Mot ; 92(7): 715-8, 2006 Nov.
Article in French | MEDLINE | ID: mdl-17124456

ABSTRACT

We report two cases of exceptional first thoracic disc herniation in a 60-year-old man and a 55-year-old woman. The man was treated surgically and the woman medically. Osteoarthritis appeared to be the predominant cause of the disc herniation in both patients. Unlike the usual calcification in the medioposterior position for middle or lower thoracic spine herniations, a soft posterolateral herniation was observed here. The symptoms are limited, as observed in both patients, to a T1 radiculopathy, to be distinguished from C8 radicopathy. Myelopathy is rare. Claude-Bernard-Horner syndrome is not constant but highly suggestive. Both of these signs were absent in our patients. T1-T2 disc herniation should be suspected in patients presenting cervico-brachial medial neuralgia. MRI provides the diagnosis. Anterior surgery can be achieved without sternotomy. Careful radiographic analysis is needed preoperatively to identify the upper limit of the sternum.


Subject(s)
Intervertebral Disc Displacement , Thoracic Vertebrae , Female , Humans , Intervertebral Disc Displacement/diagnosis , Intervertebral Disc Displacement/therapy , Magnetic Resonance Imaging , Male , Middle Aged
3.
Rev. ortop. traumatol. (Madr., Ed. impr.) ; 50(6): 447-453, nov. 2006. ilus
Article in Es | IBECS | ID: ibc-051313

ABSTRACT

Para evaluar el equilibrio sagital es necesario valorar la forma y posición de la pelvis, así como la posición de las rodillas. Si analizamos tres condiciones de la columna, la cifosis degenerativa, la espondilolistesis y la cifosis lumbosacra posquirúrgica, es posible determinar lo siguiente: en la cifosis degenerativa hay una asociación de lesión osteoarticular y de lesión muscular secundaria; en la espondilolistesis, la incidencia pélvica aumenta en los casos de lisis; y es más importante valorar el ángulo de cifosis lumbosacra que el deslizamiento. La corrección de la cifosis lumbosacra permite una corrección del desequilibrio anterior de la columna. Las osteotomías transpediculares son un buen procedimiento para corregir los desequilibrios anteriores fijos. Es necesario usar un programa de informática especial para realizar los cálculos preoperatorios con el fin de corregir la deformidad


To evaluate sagittal balance, it is necessary to assess the form and position of the pelvis and the position of the knees. If we analyze three spine conditions, namely degenerative kyphosis, spondylolisthesis, and postoperative lumbosacral kyphosis, it is possible to determine the following: in degenerative kyphosis there is an association of osteoarticular lesions and secondary muscular lesions; in spondylolisthesis, PI increases in cases where there is lysis; and the lumbosacral kyphosis angle is more important to assess than the slippage. The correction of lumbosacral kyphosis allows correction of the anterior imbalance of the spine. Transpedicular osteotomies are a good procedure to correct fixed anterior imbalances. It is necessary to use a special computer program for preoperative calculations to correct the deformity


Subject(s)
Humans , Postural Balance , Kyphosis/surgery , Spondylolisthesis/surgery , Osteotomy
4.
Eur Spine J ; 13(8): 685-90, 2004 Dec.
Article in English | MEDLINE | ID: mdl-15662542

ABSTRACT

In cervical spondylotic myelopathy, extended anterior spinal cord decompression necessitates subsequent stable vertebral reconstruction. Reconstruction with an iliac crest graft and screw-plate fixation gives satisfactory clinical and radiological results, but they are often compromised by morbidity involving the bone harvest. The purpose of this study was to evaluate the contribution to cervical reconstruction of a biocompatible, radiolucent cage combined with screw-plate fixation, making use of bone harvested in situ. This prospective study was performed between July 2000 and March 2001 in eight women and nine men (mean age, 55 years) operated for cervical spondylotic myelopathy. Situated between levels C3 and C6, the cage was inserted after one corporectomy in ten patients, two corporectomies in five patients, and three corporectomies in two patients. The cage consisted of a polyester mesh impregnated with poly-L-lactic acid (PLLA) conferring temporary rigidity to the cage during bony fusion. Clinical and radiological follow-up (plain films, computed tomographic reconstruction in three cases) was performed at 2 months, 6 months, 12 months, 24 months and 36 months, postoperatively, with a mean follow-up of 30 months. Functional results were evaluated according to the Japanese Orthopaedic Association's scoring system. An independent surgeon assessed the radiological evidence of anterior cervical fusion using the grades proposed by Bridwell [6]. Every patient experienced neurological recovery. At last follow-up, radiological findings were consistent with grade I (complete fusion) in five cases, grade II (probable fusion) in ten cases, grade III (radiolucent halo in favor of non fusion) in one case, and grade IV (graft lysis) in one case with persistent neck pain. In three cases there was screw breakage (two grade II, one grade IV). None of these cases required surgical revision at latest follow-up. In extensive spinal cord decompression through an anterior approach, cervical reconstruction using the present type of cage can achieve clinical results comparable to conventional techniques. The rigidity of the cage meets biomechanical imperatives. Its radiolucency permits one to monitor the course of consolidation, contrary to metal cages. The cases of probable non-fusion and screw breakage were not accompanied by signs of instability on the flexion extension films. This cage meets the biologic and biomechanical imperatives of cervical reconstruction. It obviates complications involving bone harvest.


Subject(s)
Cervical Vertebrae/surgery , Internal Fixators/statistics & numerical data , Plastic Surgery Procedures/instrumentation , Plastic Surgery Procedures/statistics & numerical data , Spinal Cord Compression/surgery , Spinal Fusion/instrumentation , Spinal Osteophytosis/surgery , Adult , Aged , Aged, 80 and over , Biocompatible Materials/therapeutic use , Biomechanical Phenomena , Bone Transplantation/instrumentation , Bone Transplantation/methods , Bone Transplantation/trends , Cervical Vertebrae/diagnostic imaging , Cervical Vertebrae/pathology , Female , Follow-Up Studies , Graft Survival/physiology , Humans , Internal Fixators/standards , Internal Fixators/trends , Lactic Acid/therapeutic use , Male , Middle Aged , Neck Pain/etiology , Neck Pain/physiopathology , Neck Pain/surgery , Polyesters , Polymers/therapeutic use , Postoperative Complications/etiology , Prospective Studies , Radiography , Plastic Surgery Procedures/methods , Spinal Cord Compression/etiology , Spinal Cord Compression/physiopathology , Spinal Fusion/methods , Spinal Osteophytosis/pathology , Spinal Osteophytosis/physiopathology , Treatment Outcome
5.
Hepatogastroenterology ; 48(38): 387-92, 2001.
Article in English | MEDLINE | ID: mdl-11379315

ABSTRACT

BACKGROUND/AIMS: Primary sclerosing cholangitis is a cholestatic liver disease characterized by multifocal strictures in the intra- and extrahepatic biliary tree. Dominant strictures may arise in the extrahepatic bile ducts, and in these circumstances, endoscopic therapy has been introduced to relieve cholestasis and perhaps also delay the development of liver cirrhosis. The experience of endoscopic treatment at this point in time is limited and the long-term benefit is not clear. Neoplastic transformation in primary sclerosing cholangitis is unpredictable, which is illustrated in the present study along with an evaluation of the efficacy of endoscopic treatment. METHODOLOGY: Endoscopic retrograde cholangiopancreatography was performed in 25 patients with primary sclerosing cholangitis. In 15 there were dominant strictures in the hilum of the liver and/or the distal bile duct and these patients were treated by dilation and/or endoprostheses. Four patients in the treatment group had just cholestatic biochemical test results and 11 were symptomatic. RESULTS: Endoscopic therapy was technically successful in all 15 patients. In 43 sessions, 5 patients were treated by dilation, 2 with endoprostheses, and 8 by both methods. Improvement was achieved radiologically in 12 patients, clinically in 8, and according to liver function tests in 7. Therapy was complicated by cholangitis in 5 patients. Complications were mild and there was no mortality related to the procedure. However, 6 patients in the treatment group died, 5 of cholangiocarcinoma and 1 of colon cancer. CONCLUSIONS: Endoscopic therapy in primary sclerosing cholangitis is indicated in selected patients. The cancer incidence is high, not least in patients with deteriorating disease. It is important to find techniques for identifying patients at risk in order to perform liver transplantation before malignant transformation.


Subject(s)
Cholangiopancreatography, Endoscopic Retrograde , Cholangitis, Sclerosing/surgery , Adult , Aged , Bile Duct Neoplasms/complications , Bile Duct Neoplasms/diagnosis , Bile Ducts, Intrahepatic , Catheterization , Cholangiocarcinoma/complications , Cholangiocarcinoma/diagnosis , Cholangitis, Sclerosing/complications , Cholangitis, Sclerosing/diagnosis , Cholangitis, Sclerosing/pathology , Constriction, Pathologic , Female , Humans , Liver Neoplasms/etiology , Male , Middle Aged , Prospective Studies , Stents
6.
Nature ; 409(6822): 934-41, 2001 Feb 15.
Article in English | MEDLINE | ID: mdl-11237014

ABSTRACT

The human genome is by far the largest genome to be sequenced, and its size and complexity present many challenges for sequence assembly. The International Human Genome Sequencing Consortium constructed a map of the whole genome to enable the selection of clones for sequencing and for the accurate assembly of the genome sequence. Here we report the construction of the whole-genome bacterial artificial chromosome (BAC) map and its integration with previous landmark maps and information from mapping efforts focused on specific chromosomal regions. We also describe the integration of sequence data with the map.


Subject(s)
Contig Mapping , Genome, Human , Chromosomes, Artificial, Bacterial , Cloning, Molecular , DNA Fingerprinting , Gene Duplication , Humans , In Situ Hybridization, Fluorescence , Repetitive Sequences, Nucleic Acid
7.
Lakartidningen ; 98(49): 5649-52, 5655, 2001 Dec 05.
Article in Swedish | MEDLINE | ID: mdl-11783052

ABSTRACT

As ascites is related to liver cirrhosis in 80% of the patients, the present therapeutic guidelines are focused on ascites in liver cirrhosis. A combination of spironolactone and furosemide is recommended as first line therapy in patients with mild to moderate ascites and is effective in 90% of patients. In patients with pronounced or tense ascites, first line treatment is total paracentesis with intravenous infusion of human albumin as colloid replacement. Maintenance therapy for the prevention of recurrent ascites is based on spironolactone with or without furosemide. The indications for peritoneovenous shunt, or transjugular intrahepatic stent-shunt (TIPSS), are limited and only recommended in strictly selected patients with refractory ascites. Ascites in liver cirrhosis is a symptom of advanced liver disease, and liver transplantation should always be considered in eligible patients.


Subject(s)
Ascites/therapy , Ascites/drug therapy , Ascites/prevention & control , Contraindications , Diuretics/administration & dosage , Furosemide/administration & dosage , Humans , Liver Cirrhosis/drug therapy , Paracentesis/methods , Peritoneovenous Shunt/methods , Practice Guidelines as Topic , Recurrence , Societies, Medical , Spironolactone/administration & dosage , Sweden
8.
Genome Res ; 10(11): 1772-87, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11076862

ABSTRACT

Contigs have been assembled, and over 2800 clones selected for sequencing for human chromosomes 9, 10 and 13. Using the FPC (FingerPrinted Contig) software, the contigs are assembled with markers and complete digest fingerprints, and the contigs are ordered and localised by a global framework. Publicly available resources have been used, such as, the 1998 International Gene Map for the framework and the GSC Human BAC fingerprint database for the majority of the fingerprints. Additional markers and fingerprints are generated in-house to supplement this data. To support the scale up of building maps, FPC V4.7 has been extended to use markers with the fingerprints for assembly of contigs, new clones and markers can be automatically added to existing contigs, and poorly assembled contigs are marked accordingly. To test the automatic assembly, a simulated complete digest of 110 Mb of concatenated human sequence was used to create datasets with varying coverage, length of clones, and types of error. When no error was introduced and a tolerance of 7 was used in assembly, the largest contig with no false positive overlaps has 9534 clones with 37 out-of-order clones, that is, the starting coordinates of adjacent clones are in the wrong order. This paper describes the new features in FPC, the scenario for building the maps of chromosomes 9, 10 and 13, and the results from the simulation.


Subject(s)
Contig Mapping/methods , DNA Fingerprinting/methods , Genetic Markers , Software , Chromosomes, Human, Pair 10/genetics , Chromosomes, Human, Pair 13/genetics , Chromosomes, Human, Pair 9/genetics , Computational Biology , Computer Simulation , Contig Mapping/standards , Contig Mapping/statistics & numerical data , DNA Fingerprinting/standards , DNA Fingerprinting/statistics & numerical data , DNA Fragmentation/genetics , Databases, Factual , Humans , Internet , Models, Statistical , Numerical Analysis, Computer-Assisted , Physical Chromosome Mapping
9.
Genome Res ; 9(8): 751-62, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10447510

ABSTRACT

We have established a landmark framework map over 20-25 Mb of the long arm of the human X chromosome using yeast artificial chromosome (YAC) clones. The map has approximately one landmark per 45 kb of DNA and stretches from DXS7531 in proximal Xq23 to DXS895 in proximal Xq26, connecting to published framework maps on its proximal and distal sides. There are three gaps in the framework map resulting from the failure to obtain clone coverage from the YAC resources available. Estimates of the maximum sizes of these gaps have been obtained. The four YAC contigs have been positioned and oriented using somatic-cell hybrids and fluorescence in situ hybridization, and the largest is estimated to cover approximately 15 Mb of DNA. The framework map is being used to assemble a sequence-ready map in large-insert bacterial clones, as part of an international effort to complete the sequence of the X chromosome. PAC and BAC contigs currently cover 18 Mb of the region, and from these, 12 Mb of finished sequence is available.


Subject(s)
Chromosome Mapping/methods , X Chromosome/genetics , Blotting, Southern , Chromosomes, Artificial, Yeast/genetics , Contig Mapping , Electrophoresis, Gel, Pulsed-Field , Female , Genetic Markers/genetics , Humans , In Situ Hybridization, Fluorescence , Sequence Analysis, DNA
10.
Science ; 282(5389): 744-6, 1998 Oct 23.
Article in English | MEDLINE | ID: mdl-9784132

ABSTRACT

A map of 30,181 human gene-based markers was assembled and integrated with the current genetic map by radiation hybrid mapping. The new gene map contains nearly twice as many genes as the previous release, includes most genes that encode proteins of known function, and is twofold to threefold more accurate than the previous version. A redesigned, more informative and functional World Wide Web site (www.ncbi.nlm.nih.gov/genemap) provides the mapping information and associated data and annotations. This resource constitutes an important infrastructure and tool for the study of complex genetic traits, the positional cloning of disease genes, the cross-referencing of mammalian genomes, and validated human transcribed sequences for large-scale studies of gene expression.


Subject(s)
Chromosomes, Human/genetics , Genome, Human , Physical Chromosome Mapping , Animals , Expressed Sequence Tags , Gene Expression , Genetic Markers , Human Genome Project , Humans , Internet , Rats , Sequence Tagged Sites
11.
Bioinformatics ; 14(6): 538-9, 1998.
Article in English | MEDLINE | ID: mdl-9694993

ABSTRACT

MOTIVATION: Extensions have been made to the RHMAPPER-1.1 package. One set of extensions computes the totally linked markers and uses the results as input to the salient RHMAPPER functions. The second set of extensions uses TKperl to provide an interactive interface for ease of querying the database and displaying maps. AVAILABILITY: The extensions can be obtained via ftp.sanger.ac.uk/pub/zmapper. SUPPLEMENTARY INFORMATION: The User's Manual can be viewed from http:/www.sanger.ac.uk/Users/cari/Z.shtml. CONTACT: cari@sanger.ac.uk


Subject(s)
Chromosome Mapping/methods , Software , Animals , Chromosome Mapping/statistics & numerical data , Computational Biology , Computer Graphics , Genetic Markers , Humans , Hybrid Cells , User-Computer Interface
12.
Comput Appl Biosci ; 13(5): 523-35, 1997 Oct.
Article in English | MEDLINE | ID: mdl-9367125

ABSTRACT

MOTIVATION: To meet the demands of large-scale sequencing, thousands of clones must be fingerprinted and assembled into contigs. To determine the order of clones, a typical experiment is to digest the clones with one or more restriction enzymes and measure the resulting fragments. The probability of two clones overlapping is based on the similarity of their fragments. A contig contains two or more overlapping clones and a minimal tiling path of clones is selected to be sequenced. Interactive software with algorithmic support is necessary to assemble the clones into contigs quickly. RESULTS: FPC (fingerprinted contigs) is an interactive program for building contigs from restriction fingerprinted clones. FPC uses an algorithm to cluster clones into contigs based on their probability of coincidence score. For each contig, it builds a consensus band (CB) map which is similar to a restriction map; but it does not try to resolve all the errors. The CB map is used to assign coordinates to the clones based on their alignment to the map and to provide a detailed visualization of the clone overlap. FPC has editing facilities for the user to refine the coordinates and to remove poorly fingerprinted clones. Functions are available for updating an FPC database with new clones. Contigs can easily be merged, split or deleted. Markers can be added to clones and are displayed with the appropriate contig. Sequence-ready clones can be selected and their sequencing status displayed. As such, FPC is an integrated program for the assembly of sequence-ready clones for large-scale sequencing projects.


Subject(s)
Restriction Mapping , Software , Algorithms , Cloning, Molecular , Computer Systems , Data Display , Databases, Factual , Sequence Tagged Sites , User-Computer Interface
13.
Scand J Gastroenterol ; 32(4): 328-33, 1997 Apr.
Article in English | MEDLINE | ID: mdl-9140154

ABSTRACT

BACKGROUND: Does profound acid inhibition by continuous infusion of omeprazole for 72 h reduce further bleeding in elderly patients with peptic ulcer bleeding (PUB)? METHODS: Three hundred and thirty-three patients > or = 60 years old with PUB were randomized to omeprazole (80 mg + mg/h) or placebo as continuous infusion for 72 h. From day 4 to 21 all patients received 20 mg omeprazole orally once daily. RESULTS: When evaluated on day 3, the primary variable 'overall outcome' (based on an ordinal ranking scale; see Study variables) (P = 0.017) and the secondary variables, surgery (P = 0.003), degree (P = 0.004) and duration of bleeding (P = 0.003) all favored the omeprazole group. Blood transfusions, need for endoscopic treatment, and mortality were not statistically different. On follow-up, by day 21, the mortality in the group initially receiving intravenous omeprazole was 6.9%, while the intravenous placebo group showed an extremely low mortality, 0.6%. CONCLUSION: Three days' infusion of omeprazole improved overall outcome and reduced need for intervention in PUB patients.


Subject(s)
Anti-Ulcer Agents/administration & dosage , Duodenal Ulcer/complications , Omeprazole/administration & dosage , Peptic Ulcer Hemorrhage/drug therapy , Stomach Ulcer/complications , Aged , Anti-Ulcer Agents/therapeutic use , Blood Transfusion , Double-Blind Method , Female , Hemostasis, Endoscopic , Humans , Infusions, Intravenous , Logistic Models , Male , Omeprazole/therapeutic use , Peptic Ulcer Hemorrhage/mortality , Peptic Ulcer Hemorrhage/therapy , Time Factors , Treatment Outcome
14.
DNA Seq ; 8(3): 151-4, 1997.
Article in English | MEDLINE | ID: mdl-10668960

ABSTRACT

Our aim is to construct physical clone maps covering those regions of chromosome 6 that are not currently extensively mapped, and use these to determine the DNA sequence of the whole chromosome. The strategy we are following involves establishing a high density framework map of the order of 15 markers per Megabase using radiation hybrid (RH) mapping. The markers are then used to identify large-insert genomic bacterial clones covering the chromosome, which are assembled into sequence-ready contigs by restriction enzyme fingerprinting and sequence tagged site (STS) content analysis. Contig gap closure is performed by walking experiments using STSs developed from the end sequences of the clone inserts.


Subject(s)
Chromosomes, Human, Pair 6/genetics , Contig Mapping , Databases, Factual , Humans , Sequence Analysis, DNA
17.
Comput Appl Biosci ; 11(6): 645-55, 1995 Dec.
Article in English | MEDLINE | ID: mdl-8808581

ABSTRACT

SAM (system for assembling markers) is a system which supports man-machine problem solving for iteratively ordering a set of markers. SAM aids the user in partially ordering a set of markers based on incomplete and uncertain data. As data is added and modified, SAM aids the user in updating the previously assembled maps. The input is a file of clones and for each clone, a list of the markers contained within it. The objective is to order the set of markers such that the markers contained in each clone are consecutive. The user directs the map building by selecting functions to assemble a region of markers, order the clones to fit the order of the markers and position new markers within an ordered set of markers. The user can edit the input data, edit the assembled map and add clones to the map based on their marker content. The results are displayed graphically and can be saved in a solution file. Based on the partial map, the user designs new experiments or edits the existing data to fill gaps and resolve ambiguities. When a previously assembled map is loaded into SAM, it is automatically updated with the new or altered data. SAM treats all markers as points, but has special features for multiple copy and long markers so that they can be used in the map building process. This system has supported the building of a YAC map of human chromosome 22 at the Sanger Centre, where use of Alu-PCR product markers is a major component in determining clone overlap and where we have an on-going effort to accumulate data from various sources. SAM is also being used at various other laboratories.


Subject(s)
Chromosome Mapping/methods , Genetic Markers , Software , Algorithms , Animals , Chromosome Mapping/statistics & numerical data , Chromosomes, Artificial, Yeast , Chromosomes, Human, Pair 22/genetics , Cloning, Molecular , Computer Graphics , Data Interpretation, Statistical , Databases, Factual , Evaluation Studies as Topic , Humans , Mice , Problem Solving
19.
Nature ; 377(6547 Suppl): 367-79, 1995 Sep 28.
Article in English | MEDLINE | ID: mdl-7566101

ABSTRACT

We have constructed a high-resolution clone map of human chromosome 22 which integrates the available physical and genetic information, establishing a single consensus. The map consists of all classes of DNA landmarks ordered on 705 yeast artificial chromosomes (YACs) at an average landmark density of more than one per 70 kilobases. This map represents the practical limits of currently available YAC resources and provides the basis for determination of the entire gene content and genomic DNA sequence of human chromosome 22.


Subject(s)
Chromosomes, Artificial, Yeast , Chromosomes, Human, Pair 22 , Chromosome Mapping/methods , Genetic Markers , Humans , Sequence Tagged Sites
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