Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells.

Exosomes derived from mesenchymal stem cells (MSCs) have been used for cancer treatment, however, an in-depth analysis of the exosomal proteomes is lacking. In this manuscript, we use the diaPASEF (parallel accumulation serial fragmentation combined with the data-independent acquisition) method to quantify exosomes derived from human umbilical cord mesenchymal stem cells (UCMSCs) and rat bone marrow stem cells (BMSCs), resulting in identification of 4200 human proteins and 5362 rat proteins. Comparison of human exosomal proteins and total cellular proteins reveals that some proteins exist in the exosomes exclusively that can be served as potential markers for exosomes. Quantitative proteomic analysis of exosomes from different passages of BMSCs shows that the proteins involved in TGF-ß signaling pathway are regulated in abundance, which could be markers for the therapeutic ability of BMSC exosomes. Collectively, the data presented by this study can be a resource for further study of exosome research.

Safety and biodistribution of exosomes derived from human induced pluripotent stem cells.

As a new cell-free therapy, exosomes have provided new ideas for the treatment of various diseases. Human induced pluripotent stem cells (hiPSCs) cannot be used in clinical trials because of tumorigenicity, but the exosomes derived from hiPSCs may combine the advantages of iPSC pluripotency and the nanoscale size of exosomes while avoiding tumorigenicity. Currently, the safety and biodistribution of hiPSC-exosomes in vivo are unclear. Here, we investigated the effects of hiPSC-exosomes on hemolysis, DNA damage, and cytotoxicity through cell experiments. We also explored the safety of vein injection of hiPSC-exosomes in rabbits and rats. Differences in organ distribution after nasal administration were compared in normal and Parkinson's disease model mice. This study may provide support for clinical therapy and research of intravenous and nasal administration of hiPSC-exosomes.

More is simpler: Decomposition of ligand-binding affinity for proteins being disordered.

In statistical mechanics, it is well known that the huge number of degrees of freedom does not complicate the problem as it seems, but actually greatly simplifies the analysis (e.g., to give a Boltzmann distribution). Here, we reveal that the ensemble averaging from the vast conformations of intrinsically disordered proteins (IDPs) greatly simplifies the nature of binding affinity, which can be reliably decomposed into a sum of the ligandability of IDP and the capacity of ligand. Such an unexpected regularity is applied to facilitate the virtual screening upon IDPs. It also provides essential insight in understanding the specificity difference between IDPs and conventional ordered proteins since the specificity is caused by deviation from the baseline behavior of protein-ligand binding.

Ionic surfactants as assembly crosslinkers triggered supramolecular membrane with 2D↔3D conversion under multiple stimulus.

HYPOTHESIS: General strategies leading to 2D assemblies promise a significant step forward in the development of supramolecular materials with diversity and superiority. Considering molecular packing parameter indicates a connection between molecular geometry and aggregate morphology, we predict the introduction of ionic surfactants as assembly crosslinker would be endowed to develop a methodology of 2D supramolecular assembles. EXPERIMENTS: In this work, by introducing ionic surfactants such as sodium dodecylsulfate (SDS), the molecular packing parameter P in bolaamphiphile (A2G) system was increased, which successfully manipulated the transformation of the 3D vesicles into 2D membranes. This 2D membranes further showed excellent light and enzyme response, and thus 2D to 3D morphological conversion can be rationally controlled via UV/Vis light irradiation and alternate addition of ß-CD and α-amylase. Significantly, the 2D feature revealed not only a remarkable fluorescence enhancement to luminescent molecules but also the ability to effectively remove pollutants from water through filtration. FINDINGS: We report a general and facile strategy for the construction of 2D supramolecular membranes, initiated by introducing ionic surfactants as assembly crosslinker to increase P. In the existence of stimulus response factors, 2D↔3D morphological conversion can be further controlled in a flexible manner, which opens up a new paradigm leading to interconvertible supramolecular materials.

Utilization of a Wheat50K SNP Microarray-Derived High-Density Genetic Map for QTL Mapping of Plant Height and Grain Traits in Wheat.

Plant height is significantly correlated with grain traits, which is a component of wheat yield. The purpose of this study is to investigate the main quantitative trait loci (QTLs) that control plant height and grain-related traits in multiple environments. In this study, we constructed a high-density genetic linkage map using the Wheat50K SNP Array to map QTLs for these traits in 198 recombinant inbred lines (RILs). The two ends of the chromosome were identified as recombination-rich areas in all chromosomes except chromosome 1B. Both the genetic map and the physical map showed a significant correlation, with a correlation coefficient between 0.63 and 0.99. However, there was almost no recombination between 1RS and 1BS. In terms of plant height, 1RS contributed to the reduction of plant height by 3.43 cm. In terms of grain length, 1RS contributed to the elongation of grain by 0.11 mm. A total of 43 QTLs were identified, including eight QTLs for plant height (PH), 11 QTLs for thousand grain weight (TGW), 15 QTLs for grain length (GL), and nine QTLs for grain width (GW), which explained 1.36-33.08% of the phenotypic variation. Seven were environment-stable QTLs, including two loci (Qph.nwafu-4B and Qph.nwafu-4D) that determined plant height. The explanation rates of phenotypic variation were 7.39-12.26% and 20.11-27.08%, respectively. One QTL, Qtgw.nwafu-4B, which influenced TGW, showed an explanation rate of 3.43-6.85% for phenotypic variation. Two co-segregating KASP markers were developed, and the physical locations corresponding to KASP_AX-109316968 and KASP_AX-109519968 were 25.888344 MB and 25.847691 MB, respectively. Qph.nwafu-4B, controlling plant height, and Qtgw.nwafu-4B, controlling TGW, had an obvious linkage relationship, with a distance of 7-8 cM. Breeding is based on molecular markers that control plant height and thousand-grain weight by selecting strains with low plant height and large grain weight. Another QTL, Qgw.nwafu-4D, which determined grain width, had an explanation rate of 3.43-6.85%. Three loci that affected grain length were Qgl.nwafu-5A, Qgl.nwafu-5D.2, and Qgl.nwafu-6B, illustrating the explanation rates of phenotypic variation as 6.72-9.59%, 5.62-7.75%, and 6.68-10.73%, respectively. Two QTL clusters were identified on chromosomes 4B and 4D.

Allosteric Type and Pathways Are Governed by the Forces of Protein-Ligand Binding.

Allostery is central to many cellular processes, by up- or down-regulating target function. However, what determines the allosteric type remains elusive and currently it is impossible to predict whether the allosteric compounds would activate or inhibit target function before experimental studies. We demonstrated that the allosteric type and allosteric pathways are governed by the forces imposed by ligand binding to target protein using the anisotropic network model and developed an allosteric type prediction method (AlloType). AlloType correctly predicted 13 of the 16 allosteric systems in the data set with experimentally determined protein and complex structures as well as verified allosteric types, which was also used to identify allosteric pathways. When applied to glutathione peroxidase 4, a protein with no complex structure information, AlloType could still be able to predict the allosteric type of the recently reported allosteric activators, demonstrating its potential application in designing specific allosteric drugs and uncovering allosteric mechanisms.

High-Performance Phototransistors Based on MnPSe3 and Its Hybrid Structures with Au Nanoparticles.

Layered metal thiophosphates with a general formula MPX3 (M is a group VIIB or VIII element and X is a chalcogen) have emerged as a novel member in a two-dimensional (2D) family with fascinating physical and chemical properties. Herein, the photoelectric performance of the few-layer MnPSe3 was studied for the first time. The multilayer MnPSe3 shows p-type conductivity and its field-effect transistor delivers an ultralow dark current of about 0.1 pA. The photoswitching ratio reaches ∼103 at a wavelength of 375 nm, superior to that of other thiophosphates. A responsivity and detectivity of 392.78 mA/W and 2.19 × 109 Jones, respectively, have been demonstrated under irradiation of 375 nm laser with a power intensity of 0.1 mW/cm2. In particular, the photocurrent can be remarkably increased up to 30 times by integrating a layer of Au nanoparticle array at the bottom of the MnPSe3 layer. The metal-semiconductor interfacial electric field and the strain-induced flexoelectric polarization field caused by the underlying nanorugged Au nanoparticles are proposed to contribute together to the significant current improvement.

[Spatial distribution and inter-annual variability of spawning grounds of Cynoglossus joyneri in the Yellow Sea coastal waters in summer]. / é»„æµ·è¿‘å²¸æµ·åŸŸçŸ­å»çº¢èˆŒé³Žå¤å­£äº§åµåœºçš„ç©ºé—´åˆ†å¸ƒåŠå ¶å¹´é™ å˜åŒ–.

With survey data from three voyages in the summer of 2014, 2016, and 2017, spatial distribution and inter-annual variability of spawning grounds of Cynoglossus joyneri in the coastal waters of Yellow Sea were examined based on Tweedie-generalized additive model (GAM). The results showed that the spawning grounds of C. joyneri mainly distributed in the Haizhou Bay ranging within 34°00'-35°18' N, 119°30'-121°30' E. The other one in Subei Shoal 32°18'-34°00' N, 120°18'-122°00' E. Fish eggs of C. joyneri were few in the southern waters of Shandong Peninsula 34°42'-36°48' N, 119°30'-122°00' E. The distribution of fish eggs was significantly related to the location (i.e., longitude and latitude), depth, and sea surface temperature, and did not relate to the sea surface salinity and surface chlorophyll a. The optimal range of depth, sea surface temperature, sea surface salinity, and surface chlorophyll a were 15-26 m, 29-32 ℃, 22-25 and 0.10-3 mg·m-3, respectively. There was notable inter-annual variability in the spatial distribution of spawning grounds of C. joyneri and its influencing factors. Overall, the distribution of spawning grounds is relatively stable, but potentially move northward in the year with high sea surface temperature.

[Distribution and environmental characteristics of the spawning grounds of Scomberomorus niphonius in the coastal waters of Yellow Sea, China]. / é»„æµ·è¿‘å²¸æµ·åŸŸè“ç‚¹é©¬é²›äº§åµåœºåˆ†å¸ƒåŠå ¶çŽ¯å¢ƒç‰¹å¾.

Japanese Spanish mackerel (Scomberomorus niphonius) is one of the main economic fish species in the Yellow Sea. To understand its spawning habitat and population dynamics in the early stage, we examined the distribution and environmental characteristics of spawning ground of Japanese Spanish mackerel using their egg survey data collecting in 2015 (late May) and 2017 (late May) in the coastal waters of Yellow Sea. The generalized additive model (GAM) with the Tweedie distribution was used to analyze the distribution and environmental characteristics of its spawning ground. The results showed that egg distribution was significantly related to the location (i.e., latitude and longitude), water depth, and sea surface temperature (SST), but not related to sea surface salinity (SSS). The optimal range of depth and SST were 15-30 m and 16-20 ℃, respectively. The mackerel spawning ground mainly distributed in the region Shidao fishing ground (area near 36°30' N,121°48' E) and Haizhou Bay (33°30'-36° N,119°30'-121°30' E). There were some clear inter-annual differences in the distribution of mackerel spawning ground, with the spawning ground tending to northward in the year with higher sea temperature. Therefore, it is necessary to manage and protect the above spawning ground (especially the Haizhou Bay), establishing the corresponding ecological protection and restoration strategy, to realize sustainable exploitation of mackerel fisheries resources in the Yellow Sea.

Reversible Manipulation of Supramolecular Chirality using Host-Guest Dynamics between ß-Cyclodextrin and Alkyl Amines.

Host-guest interactions are widely employed in constructing responsive materials, although less is known to manipulate the chiral property of materials using such host-guest dynamics. With the supramolecular self-assembly based on ß-cyclodextrin (ß-CD) and alkyl amines (CH3(CH2)n-1NH2), we report that faster host-guest dynamics induces a dipole located above the cavity of ß-CD, whereas slower dynamics create in-cavity dipole. These two scenarios correspond to negative and positive chiral signals, respectively. Considering that a larger fraction of amines facilitates faster exchange between the threaded and unthreaded amines, the chiral signal for the right-handed helical ribbons can be manipulated simply by alternatively increasing the fraction of amines and ß-CD. Excitingly, enzyme responsive supramolecular chirality is obtained as a result of shifting the molar ratio by enzyme triggered hydrolysis of ß-CD. We expect that this strategy may open up an area of rationally designed chiral supramolecular materials based on host-guest chemistry.