Growth rate consists of baseline and systematic deviation components in Thoroughbreds.

The objective of this study was to establish a procedure for differentiating a baseline curve from a systematic deviation in weight-age data, and hence to develop a physiological growth model for the Thoroughbred. A total of 2,698 records for 175 foals was obtained during a period of 8 yr (1994 to 2001). Weight-age data were fit with a sigmoid growth equation, W = A(1 + be(-kt))M, where W is BW at age t, A is the asymptotic value of W, b is a scaling parameter that defines the degree of maturity at t = 0, k is a rate constant, and M defines the point of inflection in the sigmoid curve in relation to age. Short-term systematic deviations in the weight-age data were identified by a goodness-of-fit procedure and illustrated in three-dimensional contour plots of the sigmoid equation parameters as they changed upon removal of selected subsets of the data. Based on features of the contour plots, a negative deviation between 210 and 420 d of age was set aside, with the remaining data establishing the baseline data set. The sigmoid growth equation was fit to the baseline data set using a nonlinear mixed model with repeated measures, and indicated a mature weight of 542 +/- 6.2 kg reached at 7 yr. The systematic deviation identified in this weight-age data set is present in other published Thoroughbred growth data and is likely to result in erroneous parameter estimates if not set aside before fitting sigmoid growth equations to the thus-modified weight-age data set. The techniques developed in this study enable identification of short-term systematic deviations in weight-age data and define a realistic baseline growth curve. Differentiation of these two components enables the development of a physiological model of growth that distinguishes between baseline growth and environmental influences, represented respectively, by the baseline curve and the systematic deviation.

Speed associated with plasma pH, oxygen content, total protein and urea in an 80 km race.

To test the hypothesis that endurance performance may be related quantitatively to changes in blood, we measured selected blood variables then determined their reference ranges and associations with speed during an 80 km race. The plan had 46 horses in a 2 x 2 factorial design testing a potassium-free electrolyte mix and a vitamin supplement. Blood samples were collected before the race, at 21, 37, 56 and 80 km, and 20 min after finishing, for assay of haematocrit, plasma pH, pO2, pCO2, [Na+], [K+], [Ca++], [Mg++], [Cl-], lactate, glucose, urea, cortisol, alpha-tocopherol, ascorbate, creatine kinase, aspartate amino transferase, lipid hydroperoxides, total protein, albumin and creatinine, and erythrocyte glutathione and glutathione peroxidase. Data from 34 finishers were analysed statistically. Reference ranges for resting and running horses were wide and overlapping and, therefore, limiting with respect to evaluation of individual horses. Speed correlations were most repeatable, with variables reflecting blood oxygen transport (enabling exercise), acidity and electrolytes (limiting exercise) and total protein (enabling then, perhaps, limiting). Stepwise regressions also included plasma urea concentration (limiting). The association of speed with less plasma acidity and urea suggests the potential for fat adaptation and protein restriction in endurance horses, as found previously in Arabians performing repeated sprints. Conditioning horses fed fat-fortified and protein-restricted diets may not only improve performance but also avoid grain-associated disorders.

History and integrity of thoroughbred dam lines revealed in equine mtDNA variation.

Mitochondrial DNA (mtDNA) D-loop sequences (381 bp) from 100 thoroughbreds in 19 of the most common matrilineal female families were used to reconstruct a founder female population for the thoroughbred ( approximately 1650-1750 AD). Seventeen haplotypes were found to have contributed to the 19 female lineages. In order to place the reconstructed founder population in wider historical context, we examined, using both single strand conformation polymorphism and direct sequence analysis, variation in a 343 bp mtDNA fragment in that population and 13 other horse populations of disparate provenance. Interpopulation diversity analyses revealed no significant difference in variation between the thoroughbred founder population and the 13 other diverse horse populations and suggested a non-random partitioning of diversity among geographically diverse horse populations. Within thoroughbreds, almost half of the female families, which are each considered from pedigrees to have matrilines converging to one of >30 historically recognized female ancestors, contained sequences which were inconsistent with common descent. Examination of the anomalies in the context of pedigree records suggests the majority might be best explained as confusion of mares at the foundation stages, although some could have some bearing on more recent (19th century - 1980) lineages. We have used this combination of molecular and historical information to identify some of the founder dams and to make new interpretations about the early history of the thoroughbred.

Estimates of parameters between direct and maternal genetic effects for weaning weight and direct genetic effects for carcass traits in crossbred cattle.

Estimates of heritabilities and genetic correlations were obtained for weaning weight records of 23,681 crossbred steers and heifers and carcass records from 4,094 crossbred steers using animal models. Carcass traits included hot carcass weight; retail product percentage; fat percentage; bone percentage; ribeye area; adjusted fat thickness; marbling score, Warner-Bratzler shear force and kidney, pelvic and heart fat percentage. Weaning weight was modeled with fixed effects of age of dam, sex, breed combination, and birth year, with calendar birth day as a covariate and random direct and maternal genetic and maternal permanent environmental effects. The models for carcass traits included fixed effects of age of dam, line, and birth year, with covariates for weaning and slaughter ages and random direct and maternal effects. Direct and maternal heritabilities for weaning weight were 0.4 +/- 0.02 and 0.19 +/- 0.02, respectively. The estimate of direct-maternal genetic correlation for weaning weight was negative (-0.18 +/- 0.08). Heritabilities for carcass traits of steers were moderate to high (0.34 to 0.60). Estimates of genetic correlations between direct genetic effects for weaning weight and carcass traits were small except with hot carcass weight (0.70), ribeye area (0.29), and adjusted fat thickness (0.26). The largest estimates of genetic correlations between maternal genetic effects for weaning weight and direct genetic effects for carcass traits were found for hot carcass weight (0.61), retail product percentage (-0.33), fat percentage (0.33), ribeye area (0.29), marbling score (0.28) and adjusted fat thickness (0.25), indicating that maternal effects for weaning weight may be correlated with genotype for propensity to fatten in steers.

Microsatellite diversity, pedigree relatedness and the contributions of founder lineages to thoroughbred horses.

The thoroughbred (TB) horse is one of the oldest breeds of domestic animals, with pedigree records spanning three centuries. Because the population is essentially closed, there is concern about loss of genetic variation. Here we report two parallel analyses. In the first, genetic variation in the current population is measured using data from 13 microsatellite loci in 211 horses with relationships calculated based on allele sharing. In the second analysis, pedigree information is used to calculate genetic relationships between animals based on shared ancestry. These two measures of relationship are compared and shown to be closely related. Together, they provide an estimate of the amount of genetic variation which existed in founder animals. This study confirms the narrow genetic base of the breed and provides comprehensive analysis of contributions of founder animals. Seventy-eight percent of alleles in the current population are derived from 30 founders, 27 of these male. Ten founder females account for 72% of maternal lineages, while one founder stallion is responsible for 95% of paternal lineages.

Genetic parameters for sex-specific traits in beef cattle.

Data from 3,593 beef heifers and 4,079 of their steer paternal half-sibs were used to estimate genetic parameters of and among female growth and reproductive traits and male carcass traits. Estimates of heritability for adjusted 205-d weight, adjusted 365-d weight, age at puberty, calving rate, and calving difficulty measured on females were .16, .38, .47, .19, and .18, respectively; estimates for calving rate and calving difficulty were expressed on a normal scale. Estimates of heritability for hot carcass weight; retail product percentage; fat percentage; bone percentage; rib eye area; kidney, pelvic, and heart fat percentage; adjusted fat thickness; marbling score; Warner-Bratzler shear force; taste panel tenderness; taste panel juiciness; and taste panel flavor that were measured on steers at an average age of 447 d (weaning age = 185, days on feed = 262) were .50, .66, .58, .54, .61, .48, .66, .71, .26, .31, .00, and .04, respectively. Genetic correlations were positive for heifer weights with hot carcass weight, fat percentage, rib eye area, adjusted fat thickness, marbling score, and Warner-Bratzler shear force, and they were negative with retail product percentage and kidney, pelvic, and heart fat percentage of steers. Age at puberty was genetically correlated with taste panel tenderness but not with other carcass traits. Calving rate had positive genetic correlations with fat percentage, rib eye area, adjusted fat thickness, and taste panel flavor, and it had negative genetic correlations with retail product percentage; bone percentage; and kidney, pelvic, and heart fat percentage. Calving difficulty had favorable genetic correlations with hot carcass weight, retail product percentage, and measures of carcass tenderness, but it was unfavorably correlated with traits that involve carcass fatness. These results indicate that selection for some traits expressed in one sex of beef cattle may result in undesirable responses in traits expressed in the opposite sex.