ABSTRACT
The existence of a culturing bias has long been known when sampling organisms from the environment. This bias underestimates microbial diversity and does not accurately reflect the most ecologically relevant species. Until now no study has examined the effects of culture bias on viral populations. We have employed culture-independent methods to assess the diversity of Sulfolobus spindle-shaped viruses (SSVs) from extremely hyperthermal environments. This diversity is then compared to the viral diversity of cultured samples. We detected a clear culturing bias between environmental samples and cultured isolates. This is the first study identifying a culture bias in a viral population.
Subject(s)
Archaeal Viruses/genetics , Genetic Variation/genetics , Virus Cultivation/methods , Genetic Markers , Genome, Viral , Hot Temperature , Northwestern United States , Phylogeny , Sulfolobus/virology , Water MicrobiologyABSTRACT
Within the last ten years complete sequencing of mitochondrial DNA in human and several other species, sequencing of nuclear and mitochondrial ribosomal and transfer RNAs in many species of bacteria, fungi, plants, and animals, and population studies of restriction enzyme polymorphism in the mtDNAs of insects, mammals and sixteen species of primates produced a wide range of new data and theory in molecular evolutionary genetics. These data support the endosymbiotic origin of the eukaryotic cell, the evolution of the Genus Homo with Pan as the closest related living genus, and the origin of modern Homo sapiens by gradualistic, anagenetic, regional phyletic transformation from Homo erectus.
