A Critical Review of State-of-the-Art and Emerging Approaches to Identify Fracking-Derived Gases and Associated Contaminants in Aquifers.

High-volume, hydraulic fracturing (HVHF) is widely applied for natural gas and oil production from shales, coals, or tight sandstone formations in the United States, Canada, and Australia, and is being widely considered by other countries with similar unconventional energy resources. Secure retention of fluids (natural gas, saline formation waters, oil, HVHF fluids) during and after well stimulation is important to prevent unintended environmental contamination, and release of greenhouse gases to the atmosphere. Here, we critically review state-of-the-art techniques and promising new approaches for identifying oil and gas production from unconventional reservoirs to resolve whether they are the source of fugitive methane and associated contaminants into shallow aquifers. We highlight future research needs and propose a phased program, from generic baseline to highly specific analyses, to inform HVHF and unconventional oil and gas production and impact assessment studies. These approaches may also be applied to broader subsurface exploration and development issues (e.g., groundwater resources), or new frontiers of low-carbon energy alternatives (e.g., subsurface H2 storage, nuclear waste isolation, geologic CO2 sequestration).

PIWIs, piRNAs and Retrotransposons: Complex battles during reprogramming in gametes and early embryos.

Gamete and embryo development are indispensable processes for successful reproduction. Cells involved in these processes acquire pluripotency, the ability to differentiate into multiple different cell types, through a series of events known as reprogramming that lead to profound changes in histone and DNA methylation. While essential for pluripotency, this epigenetic remodelling removes constraints that normally limit the expression of genomic sequences known as transposable elements (TEs). Unconstrained TE expression can lead to many deleterious consequences including infertility, so organisms have evolved complex and potent mechanistic arsenals to target and suppress TE expression during reprogramming. This review will focus on the control of transposable elements in gametes and embryos, and one important TE suppressing system known as the PIWI pathway. This broadly conserved, small RNA-targeted silencing mechanism appears critical for fertility in many species and may participate in multiple aspects of gene regulation in reproduction and other contexts.

Technical Note: Collection and preparation techniques change nutrient composition of masticate collected from esophageally fistulated cattle.

Two experiments determined effects of collection and preparation techniques on nutrient composition of masticate samples from esophageally fistulated cattle. In Exp. 1, 12 esophageally fistulated cattle were maintained on 2 precollection diets, high CP (24% CP; = 6) or low CP (7.7% CP; = 6), for 8 d. On d 9, the esophageal plug was removed, screen bottom bags were attached, and each cow was offered fresh grass. Immediately after fresh grass sample collection was complete, dry grass (hay) was offered and a sample was collected. Blood samples were collected and analyzed for serum urea nitrogen concentration. Masticate samples of both fresh and dry grass were divided and each was either squeezed by hand until no more saliva could be removed or remained unsqueezed. In Exp. 2, 10 esophageally fistulated cattle were fitted with either screen ( = 5) or solid ( = 5) bottom collection bags after removal of the esophageal plug and presented grass hay, fresh grass, alfalfa hay, or fresh alfalfa. In Exp. 1, the precollection diet did not affect ( = 0.49) CP content of masticate even though serum urea nitrogen tended to be greater ( = 0.08) for high- vs. low-CP precollection diets. Forage harvest type offered (fresh vs. hay) interacted ( = 0.01) with preparation technique (squeezed vs. unsqueezed) for CP, where CP decreased in squeezed fresh samples ( < 0.001) but not in squeezed grass hay samples ( = 0.98). In Exp. 2, ingestion greatly increased levels of ash ( < 0.001). Crude protein was greater ( < 0.004) before ingestion for all samples except grass hay ( = 0.43). Levels of NDF were similar before and after ingestion ( > 0.15) for all samples except fresh alfalfa, which was greater after ingestion ( = 0.002). Ingestion status did not affect in vitro OM disappearance (IVOMD; > 0.34) except for grass hay, which was greater after ingestion ( < 0.001). Bag type (screen vs. solid) did not affect ash and NDF ( > 0.31), except for fresh alfalfa, which were greater ( < 0.03) for solid bottom bags. Bag type did not affect alfalfa CP ( = 0.71) but did affect grass CP, which was lower ( = 0.02) for solid bottom bags. Bag type did not affect IVOMD ( > 0.33). More ( = 0.01) fresh forage than hay was recovered through the esophageal opening. Previous diet did not impact masticate samples but squeezing impacted CP levels of high-quality forage and therefore should not be performed. Nutrient values should be reported on an OM basis.

Corn residue stocking rate affects cattle performance but not subsequent grain yield.

This study investigated effects of stocking rate on cattle performance, quality and quantity of corn residue, and impact of residue removal on grain yield for 5 yr at the University of Nebraska - Lincoln West Central Water Resources Field Laboratory near Brule, NE. Four removal treatments-1) no removal (control), 2) grazing at 2.5 animal unit month (AUM)/ha, 3) grazing at 5.0 AUM/ha, and 4) baling-were applied to a center pivot-irrigated corn field (53 ha). The field was divided into eight 6.6-ha paddocks to which replicated treatments were assigned. Samples of residue were collected in October and March (before and after residue removal) using ten 0.5-m quadrats per treatment replication. Residue was separated into 5 plant parts-stem, cob, leaf, husk, and grain-and analyzed for nutrient content. Esophageally fistulated cattle were used to measure diet quality. Cattle assigned to the 2.5 AUM/ha stocking rate treatment gained more BW ( < 0.01) and BCS ( < 0.01) than cattle assigned to the 5.0 AUM/ha treatment. Leaf contained the most ( < 0.01) CP and husk had the greatest ( < 0.01) in vitro OM disappearance (IVOMD) but the CP and IVOMD of individual plant parts did not differ ( > 0.69) between sampling dates. Amount of total residue was reduced ( < 0.05) by baling and both grazing treatments between October and March but was not different ( > 0.05) in control paddocks between sampling dates. As a proportion of the total residue, stem increased ( < 0.01) and husk decreased ( < 0.01) between October and March. Diet CP content was similar ( = 0.10) between sampling dates for the 2 grazing treatments but IVOMD was greater after grazing in the 2.5 AUM/ha grazing treatment ( = 0.04). Subsequent grain yields were not different ( = 0.16) across all 4 residue removal treatments. At the proper stocking rate, corn residue grazing results in acceptable animal performance without negatively impacting subsequent corn grain production.

Effects of stocking rate on forage nutrient composition of Nebraska Sandhills upland range when grazed in early summer.

Twelve 2-ha, Nebraska Sandhills upland range paddocks were used in a 2-yr study to determine effects of stocking rate on grazed forage nutrient value in early summer. Paddocks contain a mixture of native cool- and warm-season grasses with forbs as a minor component. Stocking rates were 0 (control), 0.57 (light), and 0.85 (heavy) animal unit months per ha, respectively. Three esophageally fistulated cows collected diet samples on May 14 (d 0), May 21 (d 7), May 28 (d 14), and June 4 (d 21) in 2013 and 2014. Ten quadrats per paddock were clipped and separated into current or previous year growth on each diet sampling date. All samples were analyzed for CP, NDF, and in vitro OM disappearance, which was adjusted to an in vivo OM basis (). For diet samples, treatment interacted ( < 0.001) with sampling date for CP, NDF, and IVOMD. However, treatment and date did not interact ( ≥ 0.32) for clipped samples. Diets collected in control paddocks had greater ( < 0.05) IVOMD and CP and lower NDF compared with light and heavy stocking rate paddocks on d 7, 14, and 21 but light stocking rate paddocks did not differ ( ≥ 0.26) from heavy stocking rate paddocks on any sampling day except d 21 NDF ( = 0.03). In general, previous year growth IVOMD, CP, and NDF were not affected ( ≥ 0.11) by treatment. Generally, current year growth IVOMD and CP were not affected ( ≥ 0.22) by treatment. Current year growth NDF did not differ ( = 0.23) among stocking rates on d 0, but control paddock had lower ( = 0.02) NDF than light and heavy on d 7, 14, and 21. In stocked paddocks, diet samples had greater ( < 0.01) IVOMD and CP and lower NDF than current and previous year growth except IVOMD on d 0 where diet and current year growth did not differ ( = 0.34). Generally, in control paddocks, current year growth and diet samples had greater ( < 0.01) IVOMD and CP than previous year growth. Control paddocks had greater ( < 0.01) forage accumulation than stocked paddocks on d 7, 14, and 21; however, light and heavy stocked paddocks did not differ ( ≥ 0.29). On d 0 it was estimated that 96% of the diet was current year growth and only 4% previous year growth, whereas on d 21, 70% of the diet was current year growth vs. 30% previous year growth. Stocking pastures decrease current year growth forage mass and therefore diet nutritive value by forcing cattle to consume diets containing previous year growth in early summer.

Bioeconomic factors of beef heifer maturity to consider when establishing criteria to optimally select and/or retain herd replacements.

Understanding the biology of heifer maturity and its relationship to calving difficulty and subsequent breeding success is a vital step in building a bioeconomic model to identify optimal production and profitability. A limited dependent variable probit model is used to quantify the responses among heifer maturities, measured by a maturity index (MI), on dystocia and second pregnancy. The MI account for heifer age, birth BW, prebreeding BW, nutrition level, and dam size and age and is found to be inversely related to dystocia occurrence. On average there is a 2.2% increase in the probability of dystocia with every 1 point drop in the MI between the MI scores of 50 and 70. Statistically, MI does not directly alter second pregnancy rate; however, dystocia does. The presence of dystocia reduced second pregnancy rates by 10.67%. Using the probability of dystocia predicted from the MI in the sample, it is found that on average, every 1 point increase in MI added 0.62% to the probability of the occurrence of second pregnancy over the range represented by the data. Relationships among MI, dystocia, and second pregnancy are nonlinear and exhibit diminishing marginal effects. These relationships indicate optimal production and profitability occur at varying maturities, which are altered by animal type, economic environment, production system, and management regime. With these captured relationships, any single group of heifers may be ranked by profitability given their physical characteristics and the applicable production, management, and economic conditions.

Late gestation supplementation of beef cows differing in body condition score: effects on cow and calf performance.

A 2-yr study utilizing 120 mature, crossbred (Angus × Herford) cows/year, evaluated the influence of cow BCS and dried distillers grains with solubles (DDGS) supplementation during late gestation on cow performance and productivity of subsequent offspring. Treatments were arranged as a 2×2 factorial in a randomized complete block design with 2 BCS and with or without DDGS supplementation. Cows were nutritionally managed to enter the last trimester of gestation with a BCS of approximately 4 (LBCS) or 6 (HBCS) and were thereafter managed in a single herd (initial BCS were 4.4 and 5.7 for LBCS and HBCS treatments, respectively). During the last trimester, 12.7 kg/cow of low quality meadow hay (6.4% CP; DM basis) was provided each day. Supplemented cows were gathered and sorted into pens (12 pens; 5 cows/pen; 6 pens/BCS) every Monday, Wednesday, and Friday, and received the equivalent of 0.9 kg/cow daily of DDGS (31% CP; DM basis; supplement was consumed within 30 min on each supplementation day). Calf birth weight was greater for HBCS compared to LBCS (P=0.001) and for supplemented compared to nonsupplemented cows (P=0.04). Cow weight at weaning was greater for HBCS compared with LBCS (P<0.001); however, no differences were noted because of supplementation (P=0.16). Weaning weight was greater for the offspring of supplemented compared to nonsupplemented cows (P=0.02). There were no differences in postweaning calf performance (growing lot and feedlot) or carcass characteristics (P>0.05) due to treatments. Nevertheless, HBCS cows had approximately 10% more live calves at birth and at weaning (P≤0.01) compared to LBCS cows. Consequently, the total weaned calf weight per cow was 26 kg greater for HBCS compared with LBCS (P=0.004). Pregnancy rate was greater (P=0.05) for HBCS than LBCS cows (92% vs. 79%, respectively) but not affected by supplementation (P=0.94). This research demonstrates the potential consequences of not maintaining cows in adequate BCS at calving. Also, though it appears that supplementation of beef cows with DDGS during late gestation has a positive effect on weaning weight, there was no apparent developmental programming effect on feedlot performance and carcass characteristics of calves.

Using measurable physical characteristics to forecast beef heifer maturity: the identification of a maturity index.

A target BW is often used to estimate sexual maturity in beef heifers. The target BW, a percentage of mature BW, is generally an average for the breed, herd, or both. Heifer development is done in groups or herds, and not all heifers respond similarly to the same development regimen. Generally, heifers fed at a higher plane of nutrition gain more BW and tend to have increased pregnancy rates, but this usually increases feed costs. Therefore, determining when increased feed costs exceed the economic gains resulting from greater conception rates is critical and requires the inclusion of economic information and relationships. This research focused on the individual heifer as the decision point, and identification of the individual heifer target BW was based on clearly defined biological relationships observed before breeding. These relationships were captured in a maturity index (MI) identified through a series of steps and guided by current, accepted knowledge of heifer growth and development. Using an in-sample mean absolute percent error comparison, it was determined the MI was more accurate than the current group or herd methods in forecasting actual maturity and target BW. Maturity index demonstrated the flexibility in achieving similar maturities with beef heifers of varying characteristics using alternative nutritional programs. The MI was also the only significant predictor of first pregnancy. These results allow for more precision in determining sexual maturity and probability of first pregnancy in beef heifers and serve as the basis for future studies in determining profit differences among heifers.

Effects of pre- and postpartum nutrition on reproduction in spring calving cows and calf feedlot performance.

Crossbred, spring-calving cows (yr 1, n = 136; yr 2, n = 113; yr 3, n = 113) were used in a 3-yr experiment to evaluate the influence of supplemental protein prepartum and grazing subirrigated meadow postpartum on pregnancy rates and calf feedlot performance. A 2 x 2 factorial arrangement of treatments was used in a switchback design. From December 1 to February 28, cows grazed dormant upland range in 8 pastures (32 +/- 2 ha each). The equivalent of 0.45 kg of supplement/cow per d (42% CP) was provided to half of the cows on a pasture basis 3 d/wk. For 30 d before the beginning of breeding (May 1 to May 31), half of the cows grazed a common subirrigated meadow (58 ha), and the remainder was fed grass hay in a drylot. Cow BW and BCS were monitored throughout the year, and steer calf performance was determined until slaughter. Feeding supplement prepartum improved (P = 0.01 to P < 0.001) BCS precalving (5.1 vs. 4.7) and prebreeding (5.1 vs. 4.9) and increased (P = 0.02) the percentage of live calves at weaning (98.5 vs. 93.6%) but did not affect (P = 0.46) pregnancy rate (93 vs. 90%). Calves born to dams fed supplement prepartum had similar (P = 0.29) birth weight (37 vs. 36 kg) but greater (P = 0.02) weaning weight (218 vs. 211 kg). However, steer feedlot DMI (8.53 vs. 8.48 kg), ADG (1.6 vs. 1.6 kg), and carcass weight (369 vs. 363 kg) were not affected (P = 0.23 to P = 0.89) by prepartum supplementation. Allowing cows to graze subirrigated meadow postpartum improved (P < 0.001) BCS prebreeding (5.2 vs. 4.9) but did not affect (P = 0.88) pregnancy rate (92 vs. 91%). Allowing cows to graze subirrigated meadow increased (P = 0.01) calf weaning weight (218 vs. 211 kg) but not (P = 0.62 to P = 0.91) feedlot DMI (8.4 vs. 8.3 kg), ADG (1.6 vs. 1.6 kg), or carcass weight (363 vs. 362 kg) of their steer calves. Increased percentage of live calves at weaning as a result of feeding supplemental protein increased net returns at weaning and after finishing in the feedlot. Net returns were increased by allowing cows to graze subirrigated meadow postpartum regardless of whether calves were marketed at weaning or after finishing in the feedlot.