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1.
Nutr Clin Pract ; 35(1): 119-125, 2020 Feb.
Article in English | MEDLINE | ID: mdl-30806489

ABSTRACT

BACKGROUND: To explore the influence of nourishment state measured by various nutrition assessment tools (NATs) on health-related quality of life (HRQoL) in a pretransplant population with cirrhosis. METHODS: We collected demographic, nutrition assessment, and disease specific data on 81 patients. HRQoL was measured with the Short-Form 36 and divided into 8 subscales. Significant relationships between NATs and HRQoL were examined using independent sample t-tests, χ2 analyses, correlations, and multiple and logistic regression adjusted for age and gender. RESULTS: Study mean age was 54.2 years (SD 10.4 years), and 57% were male. Subjective Global Assessment (SGA) was significantly related to all HRQoL subscales, except bodily pain and mental health. In the adjusted regression models, general health, vitality, and social functioning were all significantly lower in patients with poorer nutrition status measured using SGA (adjusted R2 = 11%, ß = -0.34, p < 0.01; adjusted R2 = 8%, ß = -0.27, P < 0.05; and adjusted R2 = 12%, ß = -0.38, P < 0.01, Q4 respectively). Physical functioning improved as hand grip strength increased (adjusted R2 = 20%, ß = 0.36, P < 0.01). MELDNa demonstrated a significant negative relationship with role-emotional (adjusted R2 = 3%, ß = 0.25, P < 0.05), and mid-arm circumference did not demonstrate any significant relationships with HRQoL. CONCLUSIONS: Malnutrition assessed by SGA is associated with lower HRQoL in patients with cirrhosis. Future research should identify if nutrition interventions can effectively improve HRQoL in cirrhosis patients.


Subject(s)
Liver Cirrhosis/epidemiology , Malnutrition/epidemiology , Nutrition Assessment , Quality of Life , Adult , Aged , Cross-Sectional Studies , Female , Hand Strength , Health Status , Humans , Logistic Models , Male , Middle Aged , Nutritional Status , Surveys and Questionnaires
2.
J Clin Pharm Ther ; 44(5): 805-808, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31119781

ABSTRACT

WHAT IS KNOWN AND OBJECTIVE: Scleroderma is a disease characterized by excessive deposition of collagen and extracellular matrix proteins in affected organ systems, which results in tissue fibrosis and organ dysfunction. It is estimated that 90% of patients with systemic sclerosis have gastrointestinal involvement, with approximately 50% being symptomatic. Clinical manifestations of gastrointestinal scleroderma manifestations relate to impaired motility and absorption and ultimately malnutrition. Treatments for these symptoms often fail and are limited. The objective of this case report is to highlight the potential use of a substance P antagonist in the treatment of scleroderma associated nausea. CASE SUMMARY: A 56-year-old woman presented with GI complications of her underlying systemic sclerosis. The majority of her stay was marked by severe nausea and vomiting, resistant to numerous therapies. Obstructive causes for her symptoms were ruled out with a gastroscopy. A motility study revealed completely absent peristalsis in her esophagus, likely due to complete fibrosis of smooth muscle fibres. For the first time, off-label use of aprepitant 80 mg once daily was trialed with success in hospital. With this medication, she was able to maintain an adequate oral intake and ultimately achieve discharge from hospital. WHAT IS NEW AND CONCLUSION: Despite the wide array of medications for gastrointestinal scleroderma, their effect is very limited. In this article, we report to the best of our knowledge the first successful use of the substance P antagonist aprepitant to treat refractory nausea and vomiting in a patient with gastrointestinal scleroderma. Not only does this medication carry promise in treating the GI symptoms of scleroderma, but it may also prove cost effective as compared to PEG insertions or TPN. This case study is congruent with recent evidence of the utility of aprepitant in other infiltrative disease conditions. This may spur interest randomized control trials for expanding the role of this medication.


Subject(s)
Antiemetics/therapeutic use , Aprepitant/therapeutic use , Nausea/drug therapy , Scleroderma, Systemic/complications , Vomiting/drug therapy , Aged , Female , Humans , Off-Label Use
3.
Clin Nutr ESPEN ; 17: 68-74, 2017 Feb.
Article in English | MEDLINE | ID: mdl-28361750

ABSTRACT

BACKGROUND: Malnutrition is an important predictor of morbidity and mortality among cirrhotic patients. Our objectives were to assess protein-calorie malnutrition (PCM) in cirrhotic pre-liver transplant patients and to study the correlation between subjective global assessment (SGA) and other objective measures of malnutrition. METHODS: We recruited pre-liver transplant adult patients at our center between October 2012 and Oct 2015. Nutrition status was assessed via SGA. PCM was assessed by comparing recommended to actual protein and calorie intake. SGA was correlated with body mass index (BMI), dry BMI, handgrip strength by calibrated dynometer (HGS), and mid-arm circumference (MAC). We used non-parametric statistical methods in our analysis. RESULTS: Seventy patients were included in this study. Majority were males (n = 46, 66%) with a median age of 58 years (IQR: 50-61). Moderate to severe malnutrition was prevalent in our cohort (SGA-A: n = 15 (21.4%), SGA-B: n = 30 (42.9%) and SGA-C: n = 25 (35.7%). There was a significant difference in the recommended calories consumed between SGA groups (A 98.5% vs. C 79.2%, P = 0.03). A similar trend was observed for the recommended protein consumed (A 85.4%, C 62.5%; P = 0.09). SGA correlated with BMI (A = 26.4, C = 22.4; P<0.01), Dry BMI (A = 25.9, C = 20.4; P<0.01), HGS (A = 67.0, C = 47.0 PSI; P = 0.03), and MAC (A = 29.5 cm, C = 22.0 cm; P<0.01). HGS and MAC were strongly correlated (Spearman correlation 0.49, P<0.01). CONCLUSIONS: Cirrhotic patients have significant protein-calorie malnutrition. Multiple malnutrition tools including BMI, dry BMI, HGS and MAC were precisely able to assess malnutrition.


Subject(s)
Liver Cirrhosis/surgery , Liver Transplantation , Nutrition Assessment , Nutritional Status , Point-of-Care Testing , Protein-Energy Malnutrition/diagnosis , Waiting Lists , Adult , Alberta , Anthropometry , Body Mass Index , Dietary Proteins/administration & dosage , Energy Intake , Female , Hand Strength , Humans , Liver Cirrhosis/complications , Liver Cirrhosis/diagnosis , Male , Middle Aged , Muscle Strength Dynamometer , Predictive Value of Tests , Prospective Studies , Protein-Energy Malnutrition/complications , Protein-Energy Malnutrition/physiopathology , Recommended Dietary Allowances , Risk Factors
4.
Mol Microbiol ; 102(6): 1120-1137, 2016 12.
Article in English | MEDLINE | ID: mdl-27671526

ABSTRACT

In silico analyses identified a Crp/Fnr family transcription factor (HcpR) in sulfate-reducing bacteria that controls expression of the hcp gene, which encodes the hybrid cluster protein and contributes to nitrosative stress responses. There is only one hcpR gene in the model sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough, but two copies in Desulfovibrio desulfuricans 27774, which can use nitrate as an alternative electron acceptor to sulfate. Structures of the D. desulfuricans hcpR1, hcpR2 and hcp operons are reported. We present evidence that hcp expression is regulated by HcpR2, not by HcpR1, and that these two regulators differ in both their DNA-binding site specificity and their sensory domains. HcpR1 is predicted to be a b-type cytochrome. HcpR1 binds upstream of the hcpR1 operon and its synthesis is regulated coordinately with hcp in response to NO. In contrast, hcpR2 expression was not induced by nitrate, nitrite or NO. HcpR2 is an iron-sulfur protein that reacts with NO and O2 . We propose that HcpR1 and HcpR2 use different sensory mechanisms to regulate subsets of genes required for defense against NO-induced nitrosative stress, and that diversification of signal perception and DNA recognition by these two proteins is a product of D. desulfuricans adaptation to its particular environmental niche.


Subject(s)
Desulfovibrio desulfuricans/metabolism , Nitrates/metabolism , Transcription Factors/metabolism , Amino Acid Sequence , Bacterial Proteins/metabolism , Computational Biology , Computer Simulation , Desulfovibrio desulfuricans/genetics , Iron-Sulfur Proteins/metabolism , Nitrites/metabolism , Nitrosation/physiology , Operon , Transcription Factors/genetics
5.
J Biol Chem ; 290(27): 16812-23, 2015 Jul 03.
Article in English | MEDLINE | ID: mdl-25971977

ABSTRACT

The Escherichia coli fumarate-nitrate reduction regulator (FNR) protein is the paradigm for bacterial O2-sensing transcription factors. However, unlike E. coli, some bacterial species possess multiple FNR proteins that presumably have evolved to fulfill distinct roles. Here, three FNR proteins (ANR, PP_3233, and PP_3287) from a single bacterial species, Pseudomonas putida KT2440, have been analyzed. Under anaerobic conditions, all three proteins had spectral properties resembling those of [4Fe-4S] proteins. The reactivity of the ANR [4Fe-4S] cluster with O2 was similar to that of E. coli FNR, and during conversion to the apo-protein, via a [2Fe-2S] intermediate, cluster sulfur was retained. Like ANR, reconstituted PP_3233 and PP_3287 were converted to [2Fe-2S] forms when exposed to O2, but their [4Fe-4S] clusters reacted more slowly. Transcription from an FNR-dependent promoter with a consensus FNR-binding site in P. putida and E. coli strains expressing only one FNR protein was consistent with the in vitro responses to O2. Taken together, the experimental results suggest that the local environments of the iron-sulfur clusters in the different P. putida FNR proteins influence their reactivity with O2, such that ANR resembles E. coli FNR and is highly responsive to low concentrations of O2, whereas PP_3233 and PP_3287 have evolved to be less sensitive to O2.


Subject(s)
Bacterial Proteins/metabolism , Oxygen/metabolism , Pseudomonas putida/metabolism , Transcription Factors/metabolism , Bacterial Proteins/genetics , Multigene Family , Pseudomonas putida/genetics , Transcription Factors/genetics
6.
Biochem J ; 463(1): 83-92, 2014 Oct 01.
Article in English | MEDLINE | ID: mdl-25019503

ABSTRACT

The fumarate and nitrate reduction (FNR) regulator is the master switch for the transition between anaerobic and aerobic respiration in Escherichia coli. Reaction of dimeric [4Fe-4S] FNR with O2 results in conversion of the cluster into a [2Fe-2S] form, via a [3Fe-4S] intermediate, leading to the loss of DNA binding through dissociation of the dimer into monomers. In the present paper, we report studies of two previously identified variants of FNR, D154A and I151A, in which the form of the cluster is decoupled from the association state. In vivo studies of permanently dimeric D154A FNR show that DNA binding does not affect the rate of cluster incorporation into the apoprotein or the rate of O2-mediated cluster loss. In vitro studies show that O2-mediated cluster conversion for D154A and the permanent monomer I151A FNR is the same as in wild-type FNR, but with altered kinetics. Decoupling leads to an increase in the rate of the [3Fe-4S]1+ into [2Fe-2S]2+ conversion step, consistent with the suggestion that this step drives association state changes in the wild-type protein. We have also shown that DNA-bound FNR reacts more rapidly with O2 than FNR free in solution, implying that transcriptionally active FNR is the preferred target for reaction with O2.


Subject(s)
DNA, Bacterial/metabolism , Escherichia coli Proteins/metabolism , Escherichia coli/metabolism , Iron-Sulfur Proteins/metabolism , Oxygen/metabolism , Protein Multimerization/physiology , Amino Acid Substitution , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Escherichia coli/chemistry , Escherichia coli/genetics , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/genetics , Iron-Sulfur Proteins/chemistry , Iron-Sulfur Proteins/genetics , Mutation, Missense , Oxygen/chemistry
7.
Curr Opin Microbiol ; 18: 1-7, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24509484

ABSTRACT

Escherichia coli cyclic-AMP receptor protein (CRP) represents one of the paradigms of bacterial gene regulation. Yet despite decades of intensive study, new information continues to emerge that prompts reassessment of this classic regulatory system. Moreover, in recent years CRPs from several other bacterial species have been characterized, allowing the general applicability of the CRP paradigm to be tested. Here the properties of the E. coli, Mycobacterium tuberculosis and Pseudomonas putida CRPs are considered in the context of the ecological niches occupied by these bacteria. It appears that the cyclic-AMP-CRP regulatory system has been adapted to respond to distinct external and internal inputs across a broad sensitivity range that is, at least in part, determined by bacterial lifestyles.


Subject(s)
Cyclic AMP Receptor Protein/metabolism , Cyclic AMP/metabolism , Escherichia coli/physiology , Gene Expression Regulation, Bacterial , Mycobacterium tuberculosis/physiology , Pseudomonas putida/physiology , Stress, Physiological , Escherichia coli/genetics , Escherichia coli/metabolism , Mycobacterium tuberculosis/genetics , Mycobacterium tuberculosis/metabolism , Pseudomonas putida/genetics , Pseudomonas putida/metabolism
8.
J Biol Chem ; 288(16): 11492-502, 2013 Apr 19.
Article in English | MEDLINE | ID: mdl-23471974

ABSTRACT

The Fumarate nitrate reduction (FNR) regulator from Escherichia coli controls expression of >300 genes in response to O2 through reaction with its [4Fe-4S] cluster cofactor. FNR is the master switch for the transition between anaerobic and aerobic respiration. In response to physiological concentrations of nitric oxide (NO), FNR also regulates genes, including the nitrate reductase (nar) operon, a major source of endogenous cellular NO, and hmp, which encodes an NO-detoxifying enzyme. Here we show that the [4Fe-4S] cluster of FNR reacts rapidly in a multiphasic reaction with eight NO molecules. Oxidation of cluster sulfide ions (S(2-)) to sulfane (S(0)) occurs, some of which remains associated with the protein as Cys persulfide. The nitrosylation products are similar to a pair of dinuclear dinitrosyl iron complexes, [Fe(I)2(NO)4(Cys)2](0), known as Roussin's red ester. A similar reactivity with NO was reported for the Wbl family of [4Fe-4S]-containing proteins found only in actinomycetes, such as Streptomyces and Mycobacteria. These results show that NO reacts via a common mechanism with [4Fe-4S] clusters in phylogenetically unrelated regulatory proteins that, although coordinated by four Cys residues, have different cluster environments. The reactivity of E. coli FNR toward NO, in addition to its sensitivity toward O2, is part of a hierarchal network that monitors, and responds to, NO, both endogenously generated and exogenously derived.


Subject(s)
Escherichia coli Proteins/chemistry , Escherichia coli/chemistry , Iron-Sulfur Proteins/chemistry , Iron/chemistry , Nitric Oxide/chemistry , Oxygen/chemistry , Sulfides/chemistry , Aerobiosis/physiology , Anaerobiosis/physiology , Escherichia coli/metabolism , Escherichia coli Proteins/metabolism , Iron/metabolism , Iron-Sulfur Proteins/metabolism , Mycobacterium/chemistry , Mycobacterium/metabolism , Nitric Oxide/metabolism , Operon/physiology , Oxygen/metabolism , Streptomyces/chemistry , Streptomyces/metabolism , Sulfides/metabolism
9.
Open Biol ; 2(7): 120091, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22870390

ABSTRACT

Understanding gene regulation requires knowledge of changes in transcription factor (TF) activities. Simultaneous direct measurement of numerous TF activities is currently impossible. Nevertheless, statistical approaches to infer TF activities have yielded non-trivial and verifiable predictions for individual TFs. Here, global statistical modelling identifies changes in TF activities from transcript profiles of Escherichia coli growing in stable (fixed oxygen availabilities) and dynamic (changing oxygen availability) environments. A core oxygen-responsive TF network, supplemented by additional TFs acting under specific conditions, was identified. The activities of the cytoplasmic oxygen-responsive TF, FNR, and the membrane-bound terminal oxidases implied that, even on the scale of the bacterial cell, spatial effects significantly influence oxygen-sensing. Several transcripts exhibited asymmetrical patterns of abundance in aerobic to anaerobic and anaerobic to aerobic transitions. One of these transcripts, ndh, encodes a major component of the aerobic respiratory chain and is regulated by oxygen-responsive TFs ArcA and FNR. Kinetic modelling indicated that ArcA and FNR behaviour could not explain the ndh transcript profile, leading to the identification of another TF, PdhR, as the source of the asymmetry. Thus, this approach illustrates how systematic examination of regulatory responses in stable and dynamic environments yields new mechanistic insights into adaptive processes.


Subject(s)
Bacterial Outer Membrane Proteins/metabolism , Escherichia coli Proteins/metabolism , Escherichia coli/metabolism , Iron-Sulfur Proteins/metabolism , Models, Biological , Oxygen/metabolism , Repressor Proteins/metabolism , Aerobiosis/physiology , Anaerobiosis/physiology , Kinetics , Oxygen/pharmacology
10.
PLoS One ; 7(7): e40407, 2012.
Article in English | MEDLINE | ID: mdl-22792304

ABSTRACT

BACKGROUND: Members of the WhiB-like (Wbl) protein family possess iron-sulfur clusters and are implicated in the regulation of developmental processes in Actinomycetes. Mycobacterium tuberculosis possesses seven Wbl proteins. The [4Fe-4S] cluster of M. tuberculosis WhiB1 is relatively insensitive to O(2) but very sensitive to nitric oxide (NO). Nitric oxide nitrosylates the WhiB1 iron-sulfur cluster and promotes DNA-binding; the apo-forms of WhiB1 also bind DNA. However, the molecular requirements for iron-sulfur cluster acquisition and for DNA-binding by WhiB1 are poorly characterized. METHODS AND FINDINGS: WhiB1 variants were created by site-directed mutagenesis and the abilities of the corresponding proteins to acquire an iron-sulfur cluster and/or bind to whiB1 promoter DNA were assessed. All four Cys residues (Cys9, 37, 40, and 46) in the N-terminal region of WhiB1 were required for incorporation of a [4Fe-4S] cluster, whereas a possible alternative cluster ligand Asp13 (by analogy with M. smegmatis WhiB2) was not. The C-terminal region of WhiB1 is predicted to house the DNA-binding domain of the protein consisting of a predicted ß-turn ((58)GVWGG(62)) followed by two amino acid motifs ((72)KRRN(75) and (78)TKAR(81)) that are conserved in WhiB1 proteins. Gly residues (Gly58, 61 and 62) in the ß-turn and positively-charged residues (Lys72, Arg73, Arg74, Lys79 and Arg81) in the downstream conserved regions were required for binding of WhiB1 DNA. CONCLUSIONS: Site-directed mutagenesis of M. tuberculosis whiB1 and characterization of the corresponding proteins has been used to explore structure-function relationships of the NO-responsive transcription factor WhiB1. This showed that all four conserved Cys residues in the N-terminal region are required for incorporation of iron-sulfur clusters but not for DNA-binding. Analysis of variants with amino acid substitutions in the C-terminal region revealed the crucial roles played by a predicted ß-turn and two conserved positively-charged motifs in facilitating DNA-binding, but not iron-sulfur cluster acquisition, by WhiB1.


Subject(s)
Bacterial Proteins/chemistry , Iron-Sulfur Proteins/chemistry , Mycobacterium tuberculosis , Transcription Factors/chemistry , Amino Acid Motifs , Amino Acid Sequence , Amino Acid Substitution , Bacterial Proteins/genetics , Binding Sites , Cysteine/chemistry , Cysteine/genetics , Iron-Sulfur Proteins/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Promoter Regions, Genetic , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Transcription Factors/genetics
12.
Tuberculosis (Edinb) ; 92(4): 328-32, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22464736

ABSTRACT

A central feature of TB pathogenesis is the formation of Mycobacterium tuberculosis latent infections that can persist for decades. Nitric oxide produced by infected lung macrophages promotes expression of genes associated with dormancy, and impaired nitric oxide production can lead to reactivation of latent disease. Recently, WhiB1 was identified as a nitric oxide-responsive transcription factor. Here it is shown that apo-WhiB1 binds to groEL2 (Rv0440) promoter DNA. Apo-WhiB1 inhibited transcription from the groEL2 promoter in vitro and the transcript start was located ∼181 bases upstream of the groEL2 start codon. Electrophoretic mobility shift assays with sub-fragments of the groEL2 promoter indicated that the complete Rv0439c-Rv0440 intergenic region was required for WhiB1 binding, suggesting that this region possessed more than one WhiB1-binding site. DNase I footprinting identified a WhiB1-binding region that overlapped the -35 element of the groEL2 promoter. The CRP-family transcription factor Cmr (Rv1675c) was shown to bind the groEL2 promoter and activate transcription in vitro in the presence or absence of cAMP. Therefore, it is suggested that WhiB1 acts to oppose Cmr-mediated cAMP-independent activation of groEL2 expression in the presence of nitric oxide by promoter occlusion.


Subject(s)
Bacterial Proteins/physiology , Chaperonin 60/genetics , Mycobacterium tuberculosis/genetics , Transcription Factors/physiology , Transcription, Genetic , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Base Sequence , Binding Sites/genetics , Chaperonin 60/metabolism , DNA Footprinting/methods , DNA, Bacterial/genetics , DNA, Intergenic/genetics , Electrophoretic Mobility Shift Assay/methods , Gene Expression Regulation/drug effects , Genes, Bacterial , Humans , Iron-Sulfur Proteins/metabolism , Molecular Sequence Data , Mycobacterium tuberculosis/drug effects , Mycobacterium tuberculosis/metabolism , Nitric Oxide/pharmacology , Promoter Regions, Genetic , Transcription Factors/genetics , Transcription Factors/metabolism
13.
J Bacteriol ; 194(9): 2307-20, 2012 May.
Article in English | MEDLINE | ID: mdl-22389481

ABSTRACT

The ESX-1 secretion system of Mycobacterium tuberculosis has to be precisely regulated since the secreted proteins, although required for a successful virulent infection, are highly antigenic and their continued secretion would alert the immune system to the infection. The transcription of a five-gene operon containing espACD-Rv3613c-Rv3612c, which is required for ESX-1 secretion and is essential for virulence, was shown to be positively regulated by the EspR transcription factor. Thus, transcription from the start site, found to be located 67 bp upstream of espA, was dependent upon EspR enhancer-like sequences far upstream (between 884 and 1,004 bp), which we term the espA activating region (EAR). The EAR contains one of the known binding sites for EspR, providing the first in vivo evidence that transcriptional activation at the espA promoter occurs by EspR binding to the EAR and looping out DNA between this site and the promoter. Regulation of transcription of this operon thus takes place over long regions of the chromosome. This regulation may differ in some members of the M. tuberculosis complex, including Mycobacterium bovis, since deletions of the intergenic region have removed the upstream sequence containing the EAR, resulting in lowered espA expression. Consequent differences in expression of ESX-1 in these bacteria may contribute to their various pathologies and host ranges. The virulence-critical nature of this operon means that transcription factors controlling its expression are possible drug targets.


Subject(s)
Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial/physiology , Mycobacterium tuberculosis/metabolism , Operon , Transcription, Genetic , Bacterial Proteins/genetics , Base Sequence , Cloning, Molecular , Molecular Sequence Data , Multigene Family , Mycobacterium bovis/genetics , Mycobacterium bovis/metabolism , Mycobacterium smegmatis/genetics , Mycobacterium smegmatis/metabolism , Mycobacterium tuberculosis/genetics , Mycobacterium tuberculosis/pathogenicity , Promoter Regions, Genetic , Protein Binding , Virulence
14.
J Med Microbiol ; 61(Pt 6): 766-779, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22345598

ABSTRACT

The design of vaccines containing epitopes shared between different human pathogens may lead to cross-species protection. In order to identify potentially conserved bacterial antigens, bacteriophage expression libraries of genomic DNA from Streptococcus agalactiae, Streptococcus pneumoniae and Streptococcus pyogenes were probed with human sera from Staphylococcus aureus-infected and healthy individuals. By comparison with previous screening data from Staphylococcus epidermidis and Staph. aureus, putative antigenic, conserved domains across the genera were identified. In particular, three potentially antigenic conserved regions were identified based on the N-terminal domain of SACOL0609 (SdrD), the C-terminal domain of SACOL0723 (ScaB) and the C-terminus of SACOL1140 (IsdA) from Staph. aureus. The three domains were overexpressed, recombinant proteins were purified and polyclonal antisera raised against them recognized cell surface-located proteins from both staphylococcal and streptococcal species. The antisera were also able to opsonize both Staph. aureus and Strep. agalactiae thereby increasing their phagocytic uptake by human neutrophils. The conserved antigenic domains therefore represent potential cross-protective vaccine candidates.


Subject(s)
Antibodies, Bacterial/immunology , Antigens, Bacterial/immunology , Cross Reactions , Staphylococcus/immunology , Streptococcus/immunology , Antigens, Bacterial/genetics , Bacterial Proteins/genetics , Bacterial Proteins/immunology , Conserved Sequence , Cross Protection , Humans , Opsonin Proteins/immunology , Phagocytosis , Staphylococcus/genetics , Streptococcus/genetics
15.
J Am Chem Soc ; 133(4): 1112-21, 2011 Feb 02.
Article in English | MEDLINE | ID: mdl-21182249

ABSTRACT

The reactivity of protein bound iron-sulfur clusters with nitric oxide (NO) is well documented, but little is known about the actual mechanism of cluster nitrosylation. Here, we report studies of members of the Wbl family of [4Fe-4S] containing proteins, which play key roles in regulating developmental processes in actinomycetes, including Streptomyces and Mycobacteria, and have been shown to be NO responsive. Streptomyces coelicolor WhiD and Mycobacterium tuberculosis WhiB1 react extremely rapidly with NO in a multiphasic reaction involving, remarkably, 8 NO molecules per [4Fe-4S] cluster. The reaction is 10(4)-fold faster than that observed with O(2) and is by far the most rapid iron-sulfur cluster nitrosylation reaction reported to date. An overall stoichiometry of [Fe(4)S(4)(Cys)(4)](2-) + 8NO → 2[Fe(I)(2)(NO)(4)(Cys)(2)](0) + S(2-) + 3S(0) has been established by determination of the sulfur products and their oxidation states. Kinetic analysis leads to a four-step mechanism that accounts for the observed NO dependence. DFT calculations suggest the possibility that the nitrosylation product is a novel cluster [Fe(I)(4)(NO)(8)(Cys)(4)](0) derived by dimerization of a pair of Roussin's red ester (RRE) complexes.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Iron/metabolism , Nitric Oxide/metabolism , Protein Processing, Post-Translational , Sulfur/metabolism , Transcription Factors/chemistry , Transcription Factors/metabolism , Animals , Cattle , Models, Molecular , Protein Conformation
16.
Biochem J ; 432(3): 417-27, 2010 Dec 15.
Article in English | MEDLINE | ID: mdl-20929442

ABSTRACT

Mycobacterium tuberculosis is a major pathogen that has the ability to establish, and emerge from, a persistent state. Wbl family proteins are associated with developmental processes in actinomycetes, and M. tuberculosis has seven such proteins. In the present study it is shown that the M. tuberculosis H37Rv whiB1 gene is essential. The WhiB1 protein possesses a [4Fe-4S]2+ cluster that is stable in air but reacts rapidly with eight equivalents of nitric oxide to yield two dinuclear dinitrosyl-iron thiol complexes. The [4Fe-4S] form of WhiB1 did not bind whiB1 promoter DNA, but the reduced and oxidized apo-WhiB1, and nitric oxide-treated holo-WhiB1 did bind to DNA. Mycobacterium smegmatis RNA polymerase induced transcription of whiB1 in vitro; however, in the presence of apo-WhiB1, transcription was severely inhibited, irrespective of the presence or absence of the CRP (cAMP receptor protein) Rv3676, which is known to activate whiB1 expression. Footprinting suggested that autorepression of whiB1 is achieved by apo-WhiB1 binding at a region that overlaps the core promoter elements. A model incorporating regulation of whiB1 expression in response to nitric oxide and cAMP is discussed with implications for sensing two important signals in establishing M. tuberculosis infections.


Subject(s)
Bacterial Proteins , DNA-Binding Proteins , Iron-Sulfur Proteins , Mycobacterium tuberculosis/metabolism , Nitric Oxide/chemistry , Transcription Factors , Amino Acids/analysis , Apoproteins/chemistry , Apoproteins/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cyclic AMP Receptor Protein/metabolism , DNA Footprinting , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Electron Spin Resonance Spectroscopy , Electrophoretic Mobility Shift Assay , Gene Expression Regulation, Bacterial , Iron-Sulfur Proteins/chemistry , Iron-Sulfur Proteins/genetics , Iron-Sulfur Proteins/metabolism , Mutant Proteins , Mycobacterium tuberculosis/genetics , Promoter Regions, Genetic , Protein Stability , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Spectrophotometry , Transcription Factors/chemistry , Transcription Factors/genetics , Transcription Factors/metabolism
17.
J Biol Chem ; 285(10): 7016-27, 2010 Mar 05.
Article in English | MEDLINE | ID: mdl-20028978

ABSTRACT

The pathogen Mycobacterium tuberculosis produces a burst of cAMP upon infection of macrophages. Bacterial cyclic AMP receptor proteins (CRP) are transcription factors that respond to cAMP by binding at target promoters when cAMP concentrations increase. Rv3676 (CRP(Mt)) is a CRP family protein that regulates expression of genes (rpfA and whiB1) that are potentially involved in M. tuberculosis persistence and/or emergence from the dormant state. Here, the CRP(Mt) homodimer is shown to bind two molecules of cAMP (one per protomer) at noninteracting sites. Furthermore, cAMP binding by CRP(Mt) was relatively weak, entropy driven, and resulted in a relatively small enhancement in DNA binding. Tandem CRP(Mt)-binding sites (CRP1 at -58.5 and CRP2 at -37.5) were identified at the whiB1 promoter (PwhiB1). In vitro transcription reactions showed that CRP1 is an activating site and that CRP2, which was only occupied in the presence of cAMP or at high CRP(Mt) concentrations in the absence of cAMP, is a repressing site. Binding of CRP(Mt) to CRP1 was not essential for open complex formation but was required for transcription activation. Thus, these data suggest that binding of CRP(Mt) to the PwhiB1 CRP1 site activates transcription at a step after open complex formation. In contrast, high cAMP concentrations allowed occupation of both CRP1 and CRP2 sites, resulting in inhibition of open complex formation. Thus, M. tuberculosis CRP has evolved several distinct characteristics, compared with the Escherichia coli CRP paradigm, to allow it to regulate gene expression against a background of high concentrations of cAMP.


Subject(s)
Bacterial Proteins/metabolism , Cyclic AMP Receptor Protein/metabolism , Cyclic AMP/metabolism , DNA, Bacterial/metabolism , Escherichia coli/metabolism , Mycobacterium tuberculosis/metabolism , Trans-Activators/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Base Sequence , Binding Sites , Cyclic AMP Receptor Protein/chemistry , Cyclic AMP Receptor Protein/genetics , DNA, Bacterial/genetics , Escherichia coli/genetics , Gene Expression Regulation, Bacterial , Genes, Reporter , Humans , Molecular Sequence Data , Molecular Structure , Mutagenesis, Site-Directed , Mycobacterium tuberculosis/genetics , Promoter Regions, Genetic , Protein Binding , Protein Conformation , Protein Multimerization , Trans-Activators/genetics , Transcriptional Activation
18.
Int. microbiol ; 11(4): 245-250, dic. 2008. ilus, graf, tab
Article in English | IBECS | ID: ibc-61311

ABSTRACT

The Salmonella regulatory protein SlyA is implicated in virulence, survival in macrophages and resistance to oxidative stress and anti-microbial peptides. SlyA is a member of the MarR family of winged-helix transcription factors. Systematic mutational analysis of the SlyA operator sequence and of the predicted DNA-binding region of SlyA shows that no single base pair in the palindromic SlyA operator sequence is essential for DNA binding, and identifies amino acid residues required to allow SlyA to recognise DNA. Combining the structure-function studies described here and elsewhere with the structures of MarR family proteins suggests a possible model for regulation of SlyA binding to DNA (AU)


No disponible


Subject(s)
Salmonella enterica/isolation & purification , Salmonella enterica/pathogenicity , Salmonella enterica/virology , DNA/analysis , DNA/biosynthesis , Oligonucleotides/analysis , Oligonucleotides/isolation & purification , Gene Expression Regulation, Bacterial , Gene Expression Regulation, Bacterial/genetics , Gene Expression Regulation, Bacterial/physiology , Biotechnology/methods
19.
Int Microbiol ; 11(4): 245-50, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19204896

ABSTRACT

The Salmonella regulatory protein SlyA is implicated in virulence, survival in macrophages and resistance to oxidative stress and anti-microbial peptides. SlyA is a member of the MarR family of winged-helix transcription factors. Systematic mutational analysis of the SlyA operator sequence and of the predicted DNA-binding region of SlyA shows that no single base pair in the palindromic SlyA operator sequence is essential for DNA binding, and identifies amino acid residues required to allow SlyA to recognise DNA. Combining the structure-function studies described here and elsewhere with the structures of MarR family proteins suggests a possible model for regulation of SlyA binding to DNA.


Subject(s)
Bacterial Proteins/metabolism , DNA/metabolism , Salmonella typhimurium/enzymology , Transcription Factors/metabolism , Binding Sites , DNA Mutational Analysis , Models, Biological , Promoter Regions, Genetic , Protein Binding
20.
J Am Diet Assoc ; 107(9): 1575-80, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17761234

ABSTRACT

Crohn's disease is frequently associated with nutritional deficiencies, often a result of disease activity and poor oral intake. This study investigated the adequacy of dietary intake, based on the Canadian Dietary Reference Intake, in ambulatory patients with Crohn's disease and a normal body mass index (BMI; calculated as kg/m(2)). This was a cross-sectional study of 74 patients with mean age of 35.7+/-1.4 years and BMI of 23.05+/-0.45. All patients completed a 7-day food record and a diary for the Crohn's Disease Activity Index. Mean Crohn's Disease Activity Index was 138.99+/-11.38. Energy and protein intakes were within the recommended levels of intake, but total carbohydrates, fat, and saturated fat intake exceeded the recommended levels of <55%, <35%, and <10% in 39.2%, 27%, and 59.5% of the patients, respectively. Micronutrient intakes were suboptimal most notably for folate, vitamins C, E, and calcium. There were no substantial differences between patients with active and inactive disease in terms of failure to meet the Dietary Reference Intake. In conclusion, in this population sample, a large number of ambulatory patients with Crohn's disease have suboptimal dietary patterns despite a normal BMI and inactive disease. Dietary counseling and supplementation may be warranted in this patient population.


Subject(s)
Crohn Disease/physiopathology , Diet/standards , Nutrition Policy , Nutritional Requirements , Nutritional Status , Adult , Body Mass Index , Canada , Crohn Disease/diet therapy , Cross-Sectional Studies , Diet Records , Dietary Supplements , Energy Intake , Female , Humans , Male , Minerals/administration & dosage , Nutritional Physiological Phenomena , Severity of Illness Index , Vitamins/administration & dosage
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