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1.
PLoS One ; 10(12): e0145678, 2015.
Article in English | MEDLINE | ID: mdl-26714031

ABSTRACT

Recent reports suggested that chronic herpesvirus infection, as a constituent of the so-called virome, may not only exert harmful effects but may also be beneficial to the host, for example mediating increased resistance to secondary infections or to tumors. To further challenge this concept, specifically regarding increased resistance to tumors, we infected chimeric HLA-DR4-H2-E (DR4) mice, a mouse strain which spontaneously develops hematological tumors, with the rodent herpesvirus murine gammaherpesvirus 68 (MHV-68). Using this model, we observed that infection with wildtype MHV-68 completely prevented tumor formation. This happened, however, at the cost of hyposplenism. In contrast to wildtype infection, infection with a latency-deficient mutant of MHV-68 neither prevented tumor formation nor induced hyposplenism. The underlying mechanisms are not known but might be related to an infection-mediated priming of the immune response, resulting in the suppression of a tumor promoting endogenous retrovirus. Thus, under certain circumstances, chronic herpesvirus infection may prevent the development of tumors.


Subject(s)
Carcinogenesis , Rhadinovirus/physiology , Virus Latency , Animals , Carcinogenesis/immunology , Cell Line , Host-Pathogen Interactions , Interferon-gamma/biosynthesis , Mice , Retroviridae/physiology , Survival Analysis , T-Lymphocytes/immunology , T-Lymphocytes/metabolism
2.
J Gen Virol ; 93(Pt 5): 1076-1080, 2012 May.
Article in English | MEDLINE | ID: mdl-22258865

ABSTRACT

Although ORF23 is conserved among gammaherpesviruses, its role during infection is unknown. Here, we studied the expression of ORF23 of murine gammaherpesvirus 68 (MHV-68) and its role during infection. ORF23 mRNA was detected in infected cells as a late transcript. The ORF23 protein product could be expressed and detected as an N-terminally FLAG-tagged protein by Western blot and indirect immunofluorescence. To investigate the role of ORF23 in the infection cycle of a gammaherpesvirus, we constructed an ORF23 deletion mutant of MHV-68. The analysis of the ORF23 deletion mutant suggested that ORF23 of MHV-68 is neither essential for replication in cell culture nor for lytic or latent infection in vivo. A phenotype of the ORF23 deletion mutant, reflected by a moderate reduction in lytic replication and latency amplification, was only detectable in the face of direct competition to the parental virus.


Subject(s)
Open Reading Frames , Rhadinovirus/pathogenicity , Viral Proteins/metabolism , Virus Replication , Animals , Blotting, Western , Coronaviridae Infections/pathology , Coronaviridae Infections/virology , Gene Deletion , Gene Expression Profiling , Lung/virology , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Protein Biosynthesis , Rhadinovirus/growth & development , Spleen/virology , Transcription, Genetic , Viral Load , Viral Proteins/genetics
3.
J Virol ; 83(16): 8163-72, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19493995

ABSTRACT

Murine gammaherpesvirus 68 (MHV-68) is closely related to Epstein-Barr virus and Kaposi's sarcoma-associated herpesvirus (KSHV) and provides a small-animal model to study the pathogenesis of gammaherpesvirus (gammaHV) infections. According to the colinear organization of the gammaHV genomes, the M10 locus is situated at a position equivalent to the K12 locus of KSHV, which codes for proteins of the kaposin family. The M10 locus of MHV-68 has been predicted to code for three overlapping open reading frames (M10a, M10b, and M10c [M10a-c]) with unknown function. In addition, the M10 locus contains a lytic origin of replication (oriLyt). To elucidate the function of the M10 locus during lytic and latent infections, we investigated, both in vitro and in vivo, the following four recombinant viruses which were generated using MHV-68 cloned as a bacterial artificial chromosome: (i) a mutant virus with a deletion which affects both the coding region for M10a-c and the oriLyt; (ii) a revertant virus in which both the M10a-c coding region and the oriLyt were reverted to those of the wild type; (iii) a virus with an ectopic insertion of the oriLyt, which restores the function of the oriLyt but not the M10a-c coding region; and (iv) a mutant virus with a deletion in the oriLyt only. While the mutants were slightly attenuated with regard to lytic replication in cell culture, they showed severe growth defects in vivo. Both lytic replication and latency amplification were strongly reduced. In contrast, both the revertant virus and the virus with the ectopic oriLyt insertion grew very similarly to the parental wild-type virus both in vitro and in vivo. Thus, we provide genetic evidence that mutation of the oriLyt, and not of putative protein coding sequences within the M10a-c region, is responsible for the observed phenotype. We conclude that the oriLyt in the M10 locus plays an important role during infection of mice with MHV-68.


Subject(s)
Gammaherpesvirinae/physiology , Herpesviridae Infections/virology , Viral Proteins/metabolism , Virus Latency , Animals , Cell Line , Gammaherpesvirinae/genetics , Humans , Mice , Mice, Inbred C57BL , Open Reading Frames , Replication Origin , Viral Proteins/genetics , Virus Replication
4.
Australas Phys Eng Sci Med ; 32(1): 11-5, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19400547

ABSTRACT

A difference of 12% has been observed in the output of an 80 kV, 2.2 mm A1 HVL x-ray beam when comparing measurements made according to the TRS 398 medium energy protocol with measurements made according to the TRS 277 low energy protocol. Absorbed dose to water chamber calibration factors used for the TRS 398 measurements were derived from standards of air kerma with the use of the TRS 277 medium energy protocol, and given this fact the discrepancy observed can be considered in terms of a difference between the TRS 277 low and medium energy protocols for this beam. Repeat measurements using the TRS 277 low and medium energy protocols have been made to confirm this. The most likely origins for the discrepancy observed are the chamber perturbation correction, p(u), obtained from TRS 277, and the value of the measured percentage depth dose at a depth of 2 g.cm(-2) for this beam. Given these findings, reference dosimetry for this beam will be performed according to the TRS 398 low energy protocol.


Subject(s)
Guidelines as Topic , Radiometry/instrumentation , Absorption , Thermodynamics , Water , X-Rays
5.
Infect Immun ; 69(8): 5138-50, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11447196

ABSTRACT

Progressive pulmonary infection is the dominant clinical feature of cystic fibrosis (CF), but the molecular basis for this susceptibility remains incompletely understood. To study this problem, we developed a model of chronic pneumonia by repeated instillation of a clinical isolate of Burkholderia cepacia (genomovar III, ET12 strain), an opportunistic gram-negative bacterium, from a case of CF into the lungs of Cftr (m1unc-/-) (Cftr(-/-)) and congenic Cftr(+/+) controls. Nine days after the last instillation, the CF transmembrane regulator knockout mice showed persistence of viable bacteria with chronic severe bronchopneumonia while wild-type mice remained healthy. The histopathological changes in the lungs of the susceptible Cftr(-/-) mice were characterized by infiltration of a mixed inflammatory-cell population into the peribronchiolar and perivascular spaces, Clara cell hyperplasia, mucus hypersecretion in airways, and exudation into alveolar airspaces by a mixed population of macrophages and neutrophils. An increased proportion of neutrophils was observed in bronchoalveolar lavage fluid from the Cftr(-/-) mice, which, despite an increased bacterial load, demonstrated minimal evidence of activation. Alveolar macrophages from Cftr(-/-) mice also demonstrated suboptimal activation. These observations suggest that the pulmonary host defenses are compromised in lungs from animals with CF, as manifested by increased susceptibility to bacterial infection and lung injury. This murine model of chronic pneumonia thus reflects, in part, the situation in human patients and may help elucidate the mechanisms leading to defective host defense in CF.


Subject(s)
Burkholderia Infections/immunology , Burkholderia cepacia/immunology , Cystic Fibrosis Transmembrane Conductance Regulator/immunology , Lung/immunology , Animals , Bronchoalveolar Lavage Fluid/microbiology , Bronchopneumonia/microbiology , Burkholderia Infections/microbiology , Burkholderia Infections/pathology , Cyclic AMP Response Element-Binding Protein/metabolism , Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Cytokines/metabolism , Disease Susceptibility , Lung/microbiology , Lung/pathology , Macrophage Activation , Mice , Mice, Knockout , NF-kappa B/metabolism
6.
Mol Ther ; 4(1): 58-65, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11472107

ABSTRACT

We have developed an expression cassette for cystic fibrosis (CF) gene therapy using control elements from the human cytokeratin 18 gene (KRT18, also known as K18). KRT18 is naturally expressed in a spatial pattern similar to that of CFTR, the gene mutated in CF. We delivered a KRT18-driven lacZ plasmid complexed with cationic liposomes intravenously to mice and examined expression in various tissues. We found expression in nasal and bronchial epithelium, airway submucosal glands, gall bladder, and kidneys. Expression was low in pancreas and gut, and absent from liver and alveolar lung. This is consistent with the expression pattern reported for a K18lacZ transgenic mouse. Following delivery of a cytomegalovirus (CMV) major immediate-early promoter/enhancer-driven lacZ plasmid, we found expression in bronchi, submucosal glands, alveolar cells, liver, and kidney. We did not detect expression in nose, pancreas, gall bladder, or gut. Using fluorescently labeled plasmid delivered by means of liposomes, we identified the liver, alveolar lung, and kidneys as the major plasmid deposition sites. Our data demonstrate that a KRT18-driven expression vector delivered systemically can target gene expression to CF-affected tissues, despite an uneven distribution of plasmid DNA. A KRT18-based vector may be a useful alternative to viral promoter-based vectors in clinical gene therapy trials to treat CF.


Subject(s)
Cystic Fibrosis/therapy , Gene Transfer Techniques , Genetic Therapy , Keratins/genetics , Lac Operon/physiology , Phosphatidylethanolamines , Animals , Gene Expression , Genetic Vectors , Glycerophospholipids/administration & dosage , Humans , Injections, Intravenous , Liposomes , Mice , Mice, Inbred Strains , Organ Specificity , Quaternary Ammonium Compounds/administration & dosage , Surface-Active Agents , Tissue Distribution , Transgenes
7.
Mol Ther ; 2(4): 359-67, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11020351

ABSTRACT

Targeting therapeutic gene expression to disease-affected tissues is an essential component of effective and safe gene therapy. After birth, CFTR gene expression in human lungs is localized predominantly in the epithelial cells lining the upper airways, especially in the ducts and serous tubules of the submucosal glands. We have developed a K18 expression cassette, based on the DNA control elements of the human cytokeratin 18 gene. Temporal and spatial analyses of transgenic mice demonstrated that this expression cassette targets transgene expression to almost all cell types in which CFTR is expressed. Airway epithelium expression started as early as 11.5 days of gestational age and continued into the adulthood of the transgenic mice. In these adult mice, the pattern of the reporter expression strikingly matched that of the human cytokeratin 18 and human CFTR genes. The transgene expression was epithelium-specific and undetectable in connective tissue, muscle, bone, cartilage, blood, and endothelial cells. Significantly, high levels of expression were detected in tracheal submucosal glands. Together, these results suggest that our K18 expression cassette has a high potential for clinical application in gene therapy for patients with cystic fibrosis.


Subject(s)
Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Genetic Therapy , Lac Operon/physiology , Lung/metabolism , Mucous Membrane/metabolism , Animals , Cystic Fibrosis Transmembrane Conductance Regulator/biosynthesis , DNA Primers/chemistry , Enhancer Elements, Genetic , Epithelial Cells/metabolism , Female , Gene Expression , Gene Transfer Techniques , Genes, Reporter , Humans , Keratins/genetics , Lung/cytology , Male , Mice , Mice, Transgenic , Polymerase Chain Reaction , Promoter Regions, Genetic , Tissue Distribution , Transgenes
8.
Appetite ; 35(2): 131-41, 2000 Oct.
Article in English | MEDLINE | ID: mdl-10986106

ABSTRACT

Previous research has shown that moderate caffeine users develop a liking for the flavour of a novel caffeinated drink only if they experience this drink in a caffeine-deprived state. This study tested how sensitive these conditioned-flavour preferences are to subsequent changes in deprivation state and the continued presence or absence of caffeine. Thirty-six moderate caffeine consumers were given 4 training days during which they evaluated a novel flavoured caffeinated drink consumed mid-morning after 12 h caffeine deprivation. Subjects were then divided into four groups depending on whether or not they remained caffeine-deprived and whether the test drink continued to contain caffeine. They then re-evaluated the novel drink over a further 4 test days. As expected, liking for the test drink increased across the 4 training days, and this increased liking was maintained across the 4 test days in the group who continued to receive the caffeinated version of the drink in a caffeine-deprived state. Liking decreased in the test phase in the caffeine-deprived group who no longer received caffeine (extinction). It is surprising that both groups who were tested in a non-deprived state showed a marked decrease in liking on all 4 test days relative to the last training day. This implies that conditioned-flavour preferences may not be expressed in the absence of the relevant motivational state (caffeine deprivation). Together, these data suggest that flavour preferences conditioned by caffeine are very sensitive to changes in the contingent relationship between deprivation state and caffeine content of the drink.


Subject(s)
Beverages , Caffeine/administration & dosage , Food Preferences , Taste , Adult , Affect , Beverages/analysis , Caffeine/analysis , Conditioning, Psychological , Female , Humans , Male , Placebos , Time Factors
9.
J Biol Chem ; 274(50): 35601-6, 1999 Dec 10.
Article in English | MEDLINE | ID: mdl-10585437

ABSTRACT

The small size of the archaebacterial Methanococcus jannaschii tyrosyl-tRNA synthetase may give insights into the historical development of tRNAs and tRNA synthetases. The L-shaped tRNA has two major arms-the acceptor.TpsiC minihelix with the amino acid attachment site and the anticodon-containing arm. The structural organization of the tRNA synthetases parallels that of tRNAs. The more ancient synthetase domain contains the active site and insertions that interact with the minihelix portion of the tRNA. A second, presumably more recent, domain interacts with the anticodon-containing section of tRNA. The small size of the M. jannaschii enzyme is due to the absence of most of the second domain, including a segment thought to bind to the anticodon. Consistent with the absence of an anticodon-binding motif, a mutation of the central base of the anticodon had a relatively small effect on the aminoacylation efficiency of the M. jannaschii enzyme. In contrast, others showed earlier that the same mutation severely reduced charging by a normal-sized bacterial enzyme that has the aforementioned anticodon-binding motif. However, the M. jannaschii enzyme has a peptide insertion into its catalytic domain. This insertion is shared with all other tyrosyl-tRNA synthetases and is needed for a critical minihelix interaction. We show that the M. jannaschii enzyme is active on minihelix substrates over a wide temperature range and has preserved the same peptide-dependent minihelix specificity seen in other tyrosine enzymes. These findings are consistent with the concept that anticodon interactions of tRNA synthetases were later adaptations to the emerging synthetase-tRNA complex that was originally framed around the minihelix.


Subject(s)
Anticodon/metabolism , Methanococcus/enzymology , Methanococcus/genetics , RNA, Transfer, Tyr/genetics , Tyrosine-tRNA Ligase/genetics , Tyrosine-tRNA Ligase/metabolism , Base Sequence , Binding Sites , Escherichia coli/genetics , Molecular Sequence Data , Nucleic Acid Conformation , Nucleic Acid Denaturation , RNA, Transfer, Tyr/chemistry , RNA, Transfer, Tyr/metabolism , Saccharomyces cerevisiae/genetics , Thermodynamics
10.
Proc Natl Acad Sci U S A ; 96(24): 13644-9, 1999 Nov 23.
Article in English | MEDLINE | ID: mdl-10570126

ABSTRACT

The three-dimensional structure of tRNA is organized into two domains-the acceptor-TPsiC minihelix with the amino acid attachment site and a second, anticodon-containing, stem-loop domain. Aminoacyl-tRNA synthetases have a structural organization that roughly recapitulates the two-domain organization of tRNAs-an older primary domain that contains the catalytic center and interacts with the minihelix and a secondary, more recent, domain that makes contacts with the anticodon-containing arm. The latter contacts typically are essential for enhancement of the catalytic constant k(cat) through domain-domain communication. Methanococcus jannaschii tyrosyl-tRNA synthetase is a miniature synthetase with a tiny secondary domain suggestive of an early synthetase evolving from a one-domain to a two-domain structure. Here we demonstrate functional interactions with the anticodon-containing arm of tRNA that involve the miniaturized secondary domain. These interactions appear not to include direct contacts with the anticodon triplet but nonetheless lead to domain-domain communication. Thus, interdomain communication may have been established early in the evolution from one-domain to two-domain structures.


Subject(s)
Methanococcus/enzymology , Tyrosine-tRNA Ligase/metabolism , Acylation , Amino Acid Sequence , Amino Acid Substitution , Animals , Base Sequence , Binding Sites , Conserved Sequence , DNA, Archaeal , Humans , Kinetics , Methanococcus/genetics , Molecular Sequence Data , Nucleic Acid Conformation , RNA, Transfer, Tyr/metabolism , Sequence Homology, Amino Acid , Tyrosine-tRNA Ligase/chemistry , Tyrosine-tRNA Ligase/genetics
11.
Biochem J ; 340 ( Pt 3): 631-8, 1999 Jun 15.
Article in English | MEDLINE | ID: mdl-10359646

ABSTRACT

Unfolding of the soluble colicin E1 channel peptide was examined with the use of urea as a denaturant; it was shown that it unfolds to an intermediate state in 8.5 M urea, equivalent to a dimeric species previously observed in 4 M guanidinium chloride. Single tryptophan residues, substituted into the peptide at various positions by site-directed mutagenesis, were employed as fluorescent probes of local unfolding. Unfolding profiles for specific sites within the peptide were obtained by quantifying the shifts in the fluorescence emission maxima of single tryptophan residues on unfolding and plotting them against urea concentration. Unfolding reported by tryptophan residues in the C-terminal region was not characteristic of complete peptide denaturation, as evidenced by the relatively blue-shifted values of the fluorescence emission maxima. Unfolding was also monitored by using CD spectroscopy and the fluorescent probe 2-(p-toluidinyl)-naphthalene 6-sulphonic acid; the results indicated that unfolding of helices is concomitant with the exposure of protein non-polar surface. Unfolding profiles were evaluated by non-linear least-squares curve fitting and calculation of the unfolding transition midpoint. The unfolding profiles of residues located in the N-terminal region of the peptide had lower transition midpoints than residues in the C-terminal portion. The results of unfolding analysis demonstrated that urea unfolds the peptide only partly to an intermediate state, because the C-terminal portion of the channel peptide retained significant structure in 8.5 M urea. Characterization of the peptide's global unfolding by size-exclusion HPLC revealed that the partly denatured structure that persists in 8.5 M urea is a dimer of two channel peptides, tightly associated by hydrophobic interactions. The presence of the dimerized species was confirmed by SDS/PAGE and intermolecular fluorescence resonance energy transfer.


Subject(s)
Colicins/chemistry , Protein Folding , Urea/pharmacology , Amino Acid Sequence , Amino Acid Substitution , Chromatography, High Pressure Liquid , Circular Dichroism , Colicins/genetics , Colicins/metabolism , Dimerization , Electrophoresis, Polyacrylamide Gel , Escherichia coli , Guanidine , Models, Molecular , Molecular Sequence Data , Naphthalenesulfonates/chemistry , Naphthalenesulfonates/metabolism , Protein Binding , Protein Denaturation , Protein Structure, Secondary/drug effects , Spectrometry, Fluorescence , Tryptophan/analogs & derivatives , Tryptophan/chemistry , Tryptophan/genetics , Tryptophan/metabolism
12.
Biochemistry ; 38(16): 4965-71, 1999 Apr 20.
Article in English | MEDLINE | ID: mdl-10213598

ABSTRACT

The N73 nucleotide at the end of the tRNA acceptor stem is commonly used by tRNA synthetases for discrimination. Because only a few synthetase-tRNA cocrystal structures have been determined, understanding of the molecular basis for N73 discrimination is limited. Here we investigated the possibility that, for at least some synthetases, the capacity to recognize different N73 nucleotides resides in the variable sequence of the loop of motif 2, a motif found in all class II enzymes. In the cocrystal of the class II yeast aspartyl-tRNA synthetase, atomic groups of the G73 discriminator of tRNAAsp interact with three side chains of the enzyme. We examined lysyl-tRNA synthetase, a close structural homologue of the aspartyl enzyme. Different substitutions were introduced into the Escherichia coli enzyme (A73 discriminator) to make its loop more like that of the human enzyme (G73 discriminator). Our data show that the loop of motif 2 of the lysine enzyme makes tRNA functional contacts, as predicted from the structural comparison. And yet, the E. coli enzyme with the "humanized" loop sequence had the same quantitative kinetic preference for A73 versus G as the wild-type enzyme. We conclude that discriminator base selectivity in the lysine enzyme requires residues in addition to or other than those in the loop of motif 2. Thus, even tRNA synthetases that are close structural homologues may use the same RNA binding element to make functional contacts with places (in the acceptor stem) that are idiosyncratic to each synthetase-tRNA pair.


Subject(s)
Lysine-tRNA Ligase/metabolism , Peptides/metabolism , RNA, Transfer, Lys/metabolism , Acylation , Adenine/metabolism , Escherichia coli/enzymology , Escherichia coli/genetics , Guanine/metabolism , Humans , Kinetics , Lysine-tRNA Ligase/chemistry , Models, Molecular , Mutagenesis, Site-Directed , Peptides/chemistry , RNA, Transfer, Lys/chemistry , Sequence Homology, Amino Acid , Substrate Specificity/genetics
13.
Am J Physiol ; 275(3): L452-60, 1998 09.
Article in English | MEDLINE | ID: mdl-9728039

ABSTRACT

Cationic liposomes, 1:1 (mol/mol) 1,2-dioleoyldimethylammonium chloride-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, were used to transfect primary cultures of distal rat fetal lung epithelial cells with pCMV4-based plasmids. A DNA-to-lipid ratio of 1:10 to 1:15 (wt/wt) optimized DNA uptake over a 24-h exposure. At a fixed DNA-to-lipid ratio of 1:15, chloramphenicol acetyltransferase (CAT) reporter gene expression declined at lipid concentrations > 2.5 nmol/cm2 cell surface area, whereas DNA uptake remained concentration dependent. CAT expression peaked 48 h after removal of the liposome-DNA complex, declining thereafter. Reporter gene expression was increased, and supercoiled cDNA degradation was reduced by the addition of 0.2 mM nicotinamide and 10 microM chloroquine. Rat fetal lung epithelial cells transfected with two different expression cassettes had an increased susceptibility to superoxide-mediated cytotoxicity. This could be attributed to a nonspecific delivery of exogenous DNA or some other copurified factor. The DNA-dependent increase in superoxide-mediated cytotoxicity, but not basal levels of cytotoxicity, was inhibited by the addition of 0.2 mM nicotinamide and 10 microM chloroquine.


Subject(s)
Chloramphenicol O-Acetyltransferase/genetics , DNA/metabolism , Epithelial Cells/physiology , Lung/physiology , Transfection/methods , Animals , Cell Survival/drug effects , Cells, Cultured , Chloramphenicol O-Acetyltransferase/biosynthesis , Cytomegalovirus , Drug Carriers , Epithelial Cells/cytology , Epithelial Cells/drug effects , Fetus , Genes, Reporter , Genetic Vectors , Liposomes , Lung/cytology , Lung/drug effects , Phosphatidylethanolamines , Plasmids , Quaternary Ammonium Compounds , Rats , Recombinant Proteins/biosynthesis , Superoxides/toxicity
14.
Proc Natl Acad Sci U S A ; 95(19): 11295-300, 1998 Sep 15.
Article in English | MEDLINE | ID: mdl-9736730

ABSTRACT

We present a phylogenetic analysis to determine whether a given tRNA molecule was established in evolution before its cognate aminoacyl-tRNA synthetase. The earlier appearance of tRNA versus their metabolically related enzymes is a prediction of the RNA world theory, but the available synthetase and tRNA sequences previously had not allowed a formal comparison of their relative time of appearance. Using data recently obtained from the emerging genome projects, our analysis points to the extant forms of lysyl-tRNA synthetase being preceded in evolution by the establishment of the identity of lysine tRNA.


Subject(s)
Amino Acyl-tRNA Synthetases/genetics , Genetic Code/genetics , RNA, Transfer/genetics , Archaea/chemistry , Bacteria/chemistry , Biological Evolution , Eukaryotic Cells/chemistry , Phylogeny , RNA/chemistry , RNA/genetics , RNA, Transfer, Lys/biosynthesis , Sequence Alignment
15.
Biochemistry ; 36(23): 6874-84, 1997 Jun 10.
Article in English | MEDLINE | ID: mdl-9188682

ABSTRACT

In vitro, the channel-forming domain of colicin E1 requires activation by acidic pH (<4.5) or detergents. The activation of this domain to its insertion-competent state results in an increased ability of the protein to dock onto and to form channels in artificial membranes. Fluorescence methods were used to characterize the conformational changes occurring in a channel-forming peptide of colicin E1 in solution with pH. The 178-residue thermolytic fragment of colicin E1 contains three Trp residues, W-424, W-460, and W-495. In order to study the structural and dynamic requirements for activation of the C-terminal domain of colicin E1, single-Trp-containing peptides were prepared by site-directed mutagenesis. All of the mutant peptides displayed in vitro channel activity and cellular cytotoxicity similar to the those of wild-type peptide. Two Trp residues, W-413 and W-424, exhibited pH-sensitive fluorescence parameters. Upon acidification (pH 6.0 --> 3.5), the fluorescence quantum yield of W-413 and W-424 increased 50% and 80%, respectively, indicating a significant change in the local environment of the peptide segment containing these two Trp residues. The fluorescence decay of W-413 and W-424 was best fit by three fluorescence decay components, two of which were sensitive to pH. However, only small changes in spectral shape and position were observed for W-424 fluorescence, whereas there were larger changes in these fluorescence parameters for W-413. The quantum yields for the Trp residues in the seven other single-Trp mutant peptides and the wild-type peptide were distinct but only slightly affected by changes in pH. Time-resolved fluorescence measurements showed that W-460, -484, and -495 each had two fluorescence decay components with similar decay times, with one component dominating the fluorescence decay behavior. Furthermore, the individual fluorescence decay times for all the single-Trp peptides, except for W-413 and W-424, were insensitive to pH changes. At pH 3.5, the fluorescence of the wild-type peptide was fit by three decay time components, with the two longer decay times being quite different from the fluorescence decay times of the single-Trp mutant proteins (W-424, -460, and -495, the naturally occurring Trp residues). In contrast, at pH 6.0, the wild-type peptide showed double-exponential decay kinetics. Time-resolved fluorescence anisotropy decay measurements of the three single-Trp mutant proteins, containing a naturally occurring Trp residue, suggest that local segmental motion of the peptide as reported by each of the three tryptophans is highly restricted and largely insensitive to changes in pH. On the other hand, the anisotropy decay profiles of the wild-type protein were consistent with energy transfer occurring between Trp residues, likely between W-460 and W-495. These steady-state and time-resolved fluorescence results show that W-413 and W-424 report conformational changes which may be associated with the insertion-competent state and reside on the protein segment(s) which form the pH-activated trigger of the channel peptide.


Subject(s)
Colicins/chemistry , Ion Channels/chemistry , Lipid Bilayers/metabolism , Amino Acid Sequence , Binding Sites , Cell Membrane/metabolism , Chromatography, High Pressure Liquid , Colicins/genetics , Colicins/metabolism , Hydrogen-Ion Concentration , In Vitro Techniques , Ion Channels/genetics , Ion Channels/metabolism , Models, Molecular , Molecular Sequence Data , Protein Conformation , Spectrometry, Fluorescence , Spectrophotometry, Atomic , Tryptophan
16.
Biochemistry ; 36(10): 3037-46, 1997 Mar 11.
Article in English | MEDLINE | ID: mdl-9062135

ABSTRACT

The equilibrium unfolding pathway of the colicin E1 channel peptide was shown in a previous study to involve an unfolding intermediate, stable in approximately 4 M guanidine hydrochloride, which comprised primarily the C-terminal hydrophobic alpha-helical hairpin segment of the peptide [Steer, B. A., & Merrill, A. R. (1995) Biochemistry 34, 7225-7233]. In this study, the structural nature of this unfolding intermediate was investigated further, and it was found that the intermediate primarily consists of a dimer species and is comprised of two partially denatured monomeric peptides, which appear to be associated by hydrophobic interactions. The dimerized structure was detected by size-exclusion high-performance liquid chromatography, sodium dodecyl sulfate-polyacrylamide gel electrophoresis, chemical cross-linking, and intermolecular fluorescence energy transfer. Using stopped-flow fluorescence spectroscopy, the kinetics of the denaturation and dimerization of the colicin E1 channel peptide in 4 M guanidine hydrochloride were examined. Denaturation kinetics were also investigated by wild-type peptide Trp fluorescence and 1-anilinonaphthalene-8-sulfonic acid binding. The kinetics of dimer formation were examined by monitoring the time dependence of intermolecular Trp to 5-[[2-[(iodoacetyl)amino]ethyl]amino]naphthalene-1-sulfonic acid fluorescence resonance energy transfer upon denaturation in 4 M guanidine hydrochloride. In addition, single Trp mutant peptides were employed as site-specific fluorescent probes of unfolding kinetics and reported diverse and characteristic unfolding kinetics. However, it was shown that following a rapid and major unfolding transition the peptide's core residues cluster slowly, by hydrophobic association, forming an intermediate species which is a prerequisite to dimerization. These equilibrium and kinetic unfolding data describe a unique unfolding mechanism where the channel peptide forms a partially unfolded dimerized structure in 4 M guanidine hydrochloride.


Subject(s)
Colicins/chemistry , Escherichia coli/chemistry , Protein Denaturation , Protein Folding , Anilino Naphthalenesulfonates , Chromatography, Gel , Colicins/metabolism , Cross-Linking Reagents , Dimerization , Electrophoresis, Polyacrylamide Gel , Fluorescent Dyes , Guanidine , Guanidines , Kinetics , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Spectrometry, Fluorescence , Tryptophan
17.
Biochemistry ; 34(21): 7225-33, 1995 May 30.
Article in English | MEDLINE | ID: mdl-7766633

ABSTRACT

The soluble colicin E1 channel peptide has a roughly spherical, highly alpha-helical, compact structure. The structural unfolding properties of the colicin E1 channel peptide were analyzed using fluorescence techniques. The guanidine hydrochloride-induced unfolding pattern of the wild-type channel peptide was examined by monitoring intrinsic tryptophan fluorescence. Additionally, peptide unfolding was examined with the fluorophore, 1-anilinonaphthalene-8-sulfonic acid. In order to probe the unfolding of local segments, single-tryptophan channel peptides were constructed by site-directed mutagenesis. Shifts in fluorescence emission maxima of the single tryptophan residues were used to monitor site-specific unfolding events, in the presence of guanidine hydrochloride. The unfolding patterns reported by tryptophans in different regions of the peptide were diverse. The concentration of guanidine hydrochloride at the unfolding transition midpoint for each mutant peptide and the free energy of unfolding were calculated in order to estimate local segment stabilities. Also, secondary structure unfolding was monitored using circular dichroism spectroscopy. The results of unfolding analysis showed that the channel peptide's unfolding mechanism involves an intermediate structure stabilized by the C-terminal hydrophobic core of the peptide. Knowledge of the unfolding pattern of the soluble channel peptide will aid in the understanding of the secondary and tertiary structural interactions within the channel peptide and the mechanism of colicin E1 activation.


Subject(s)
Colicins/chemistry , Guanidines/chemistry , Peptides/chemistry , Protein Folding , Tryptophan/chemistry , Circular Dichroism , Guanidine , Mutagenesis, Site-Directed , Peptides/genetics , Protein Denaturation , Thiocyanates , Tryptophan/genetics
18.
Bone ; 16(3): 357-65, 1995 Mar.
Article in English | MEDLINE | ID: mdl-7786639

ABSTRACT

In the osteopenic rat model, estrogen deficiency results in increased bone turnover with net bone loss occurring during cancellous modeling. However, estrogen-deficient rats treated with parathyroid hormone (PTH) experience a net gain of bone tissue due to the anabolic effects of PTH. To evaluate the possibility that local insulinlike growth factor I (IGF-I) production modulates the in vivo balance of bone formation and resorption in ovariectomized (OVX) estrogen-deficient rats and in OVX rats treated with PTH, we have studied the expression of IGF-I mRNA in cancellous bone osteoblasts using in situ hybridization techniques. Three-month-old virgin rats were subjected to sham surgery or OVX. Two weeks later, half the OVX rats began treatment with hPTH(1-34), 5 micrograms/100 g body weight, 5 days/week for 4 weeks. All animals were killed at the same time, providing three groups: sham surgery alone; OVX alone; and OVX + PTH. Bone histomorphometry performed in undecalcified sections of tibial metaphysis confirmed that OVX rats had significantly (p < 0.05) increased bone surface formation rates (BFR/BS, micron 3/micron 2/year) with osteopenia while OVX + PTH rats had increased BFR/BS with increased bone volumes compared to sham animals (p < 0.05). Decalcified tissue from all three groups contained immunoreactive IGF-I. Similar tissue sections were hybridized with an 35S-labeled IGF-I antisense riboprobe. Evaluation of the specific signal over cancellous osteoblasts allowed a relative estimate of IGF-I mRNA transcript abundance in the three groups by counting silver grains per osteoblast, corrected for background activity.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Bone Density/drug effects , Bone Diseases, Metabolic/physiopathology , Gene Expression Regulation/drug effects , Insulin-Like Growth Factor I/genetics , Osteoblasts/metabolism , Parathyroid Hormone/pharmacology , Analysis of Variance , Animals , Bone Density/physiology , Bone Development/drug effects , Bone Resorption/drug therapy , Disease Models, Animal , Estrogens/deficiency , Female , Gene Expression Regulation/genetics , Immunohistochemistry , In Situ Hybridization , Osteoblasts/cytology , Osteoblasts/drug effects , Osteocalcin/metabolism , Ovariectomy , Parathyroid Hormone/administration & dosage , Parathyroid Hormone/therapeutic use , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Rats , Rats, Sprague-Dawley , Transcription, Genetic/drug effects , Transcription, Genetic/genetics
19.
Bone ; 15(5): 563-76, 1994.
Article in English | MEDLINE | ID: mdl-7980968

ABSTRACT

Regulation of long bone growth by growth hormone and other endocrine factors is mediated by the local synthesis of IGF-I in the growth plate. Recent evidence suggests that different regions of the growth plate exhibit variable growth rates. To investigate whether IGF-I gene expression in the growth plate differs in relation to growth, we examined the distribution of IGF-I mRNA and peptide using in situ hybridization and immunohistochemistry, respectively, in the tibiae of 18-week-old rats (n = 6). Osteoblasts were identified by osteocalcin immunoreactivity, and osteoclasts by tartrate-resistant acid phosphatase (TRAP) histochemistry. The abundance of IGF-I mRNA in growth plate chondrocytes was quantified by counting the autoradiographic signal associated with each cell. IGF-I mRNA was identified in chondrocytes of both the proliferative and hypertrophic zones of the growth plate. Cells in the marginal regions of both zones contained significantly more IGF-I mRNA than those in the central region (p < 0.05). In addition, IGF-I mRNA levels were greater in the periphery of the growth plate on the medial side of the tibia (p < 0.05) in which there was more active growth than the lateral side. IGF-I immunoreactivity was present predominantly in the hypertrophic zone chondrocytes and no regional differences in its distribution were observed. IGF-I mRNA and peptide were also identified in periosteal fibroblasts, notably at sites of muscle attachment to bone, and in osteoblasts at active sites of bone remodelling in the periosteal, endocortical, and endosteal bone envelopes. In the TRAP-positive osteoclasts, IGF-I immunoreactivity, but not IGF-I mRNA, was detected. In addition, both IGF-I mRNA and peptide were identified in the hemopoietic cells of the metaphyseal bone marrow, whereas only IGF-I immunoreactivity was detectable in the diaphysis. We conclude that, in the tibiae of mature rats: (i) IGF-I gene expression in the growth plate is related to its growth and/or synthetic activity; and (ii) the presence of IGF-I in osteoblasts and osteoclasts suggests its involvement in active bone growth and remodeling.


Subject(s)
Cartilage, Articular/metabolism , Gene Expression Regulation/genetics , Growth Plate/metabolism , Insulin-Like Growth Factor I/genetics , Tibia/metabolism , Analysis of Variance , Animals , Bone Remodeling/genetics , Cartilage, Articular/cytology , Cell Division/genetics , Female , Fibroblasts/metabolism , Fibroblasts/physiology , Growth Plate/cytology , Immunohistochemistry , In Situ Hybridization , Insulin-Like Growth Factor I/metabolism , Osteoblasts/metabolism , Osteoblasts/physiology , RNA, Messenger/metabolism , Rats , Rats, Sprague-Dawley , Recombinant Proteins , Tibia/cytology
20.
Can J Microbiol ; 40(5): 397-402, 1994 May.
Article in English | MEDLINE | ID: mdl-8069782

ABSTRACT

Sixty-three clinical isolates identified as Escherichia coli, 30 from the human urinary tract and 33 derived from other human origins, were screened for proline/glycine betaine transporters similar to those that support proline catabolism and proline- or glycine betaine-based osmoregulation in E. coli K-12. Both molecular (DNA- and protein-based) analyses and physiological tests were performed. All tests were calibrated with E. coli K-12 derivatives from which genetic loci putP (encoding a proline transporter required for proline catabolism), proP, and (or) proU (loci encoding osmoregulatory proline/glycine betaine transporters) had been deleted. All clinical isolates showed both enhanced sensitivity to the toxic proline analogue azetidine-2-carboxylate on media of high osmolality and growth stimulation by glycine betaine in an artificial urine preparation of high osmolality. DNA sequences similar to the putP, proP, and proU loci of E. coli K-12 were detected by DNA amplification and (or) hybridization and protein specifically reactive with antibodies raised against the ProX protein of E. coli K-12 (a ProU constituent) was detected by western blotting in over 95% of the isolates. Two anomalous isolates were reclassified as non-E. coli on the basis of the API 20E series of tests. A protein immunochemically cross-reactive with the ProP protein of E. coli K-12 was also expressed by the clinical isolates. Since all three transporters were ubiquitous, no particular correlation between clinical origin and PutP, ProP, or ProU activity was observed. These data suggest that the transporters encoded in loci putP, proP, and proU perform housekeeping functions essential for the survival of E. coli cells in diverse habitats.


Subject(s)
Amino Acid Transport Systems, Neutral , Amino Acid Transport Systems , Bacterial Proteins/genetics , Carrier Proteins/genetics , Escherichia coli Infections/microbiology , Escherichia coli Proteins , Escherichia coli/genetics , Genes, Bacterial , Membrane Transport Proteins/genetics , Symporters , Azetidinecarboxylic Acid/pharmacology , Bacterial Proteins/biosynthesis , Betaine/pharmacology , Carrier Proteins/biosynthesis , DNA, Bacterial/genetics , Escherichia coli/isolation & purification , Escherichia coli/metabolism , Escherichia coli/pathogenicity , Gene Expression Regulation, Bacterial/drug effects , Genetic Complementation Test , Humans , Hypertonic Solutions/pharmacology , Membrane Transport Proteins/biosynthesis , Polymerase Chain Reaction , Urinary Tract Infections/microbiology , Virulence
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