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1.
PLoS Comput Biol ; 20(6): e1012208, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38900844

ABSTRACT

The apicomplexan intracellular parasite Toxoplasma gondii is a major food borne pathogen that is highly prevalent in the global population. The majority of the T. gondii proteome remains uncharacterized and the organization of proteins into complexes is unclear. To overcome this knowledge gap, we used a biochemical fractionation strategy to predict interactions by correlation profiling. To overcome the deficit of high-quality training data in non-model organisms, we complemented a supervised machine learning strategy, with an unsupervised approach, based on similarity network fusion. The resulting combined high confidence network, ToxoNet, comprises 2,063 interactions connecting 652 proteins. Clustering identifies 93 protein complexes. We identified clusters enriched in mitochondrial machinery that include previously uncharacterized proteins that likely represent novel adaptations to oxidative phosphorylation. Furthermore, complexes enriched in proteins localized to secretory organelles and the inner membrane complex, predict additional novel components representing novel targets for detailed functional characterization. We present ToxoNet as a publicly available resource with the expectation that it will help drive future hypotheses within the research community.


Subject(s)
Protein Interaction Maps , Protozoan Proteins , Toxoplasma , Toxoplasma/metabolism , Protozoan Proteins/metabolism , Protozoan Proteins/chemistry , Protein Interaction Maps/physiology , Computational Biology , Protein Interaction Mapping/methods , Proteome/metabolism , Databases, Protein , Machine Learning , Cluster Analysis
2.
Proc Natl Acad Sci U S A ; 111(22): 8179-84, 2014 Jun 03.
Article in English | MEDLINE | ID: mdl-24843155

ABSTRACT

The human-infective parasite Trichomonas vaginalis causes the most prevalent nonviral sexually transmitted infection worldwide. Infections in men may result in colonization of the prostate and are correlated with increased risk of aggressive prostate cancer. We have found that T. vaginalis secretes a protein, T. vaginalis macrophage migration inhibitory factor (TvMIF), that is 47% similar to human macrophage migration inhibitory factor (HuMIF), a proinflammatory cytokine. Because HuMIF is reported to be elevated in prostate cancer and inflammation plays an important role in the initiation and progression of cancers, we have explored a role for TvMIF in prostate cancer. Here, we show that TvMIF has tautomerase activity, inhibits macrophage migration, and is proinflammatory. We also demonstrate that TvMIF binds the human CD74 MIF receptor with high affinity, comparable to that of HuMIF, which triggers activation of ERK, Akt, and Bcl-2-associated death promoter phosphorylation at a physiologically relevant concentration (1 ng/mL, 80 pM). TvMIF increases the in vitro growth and invasion through Matrigel of benign and prostate cancer cells. Sera from patients infected with T. vaginalis are reactive to TvMIF, especially in males. The presence of anti-TvMIF antibodies indicates that TvMIF is released by the parasite and elicits host immune responses during infection. Together, these data indicate that chronic T. vaginalis infections may result in TvMIF-driven inflammation and cell proliferation, thus triggering pathways that contribute to the promotion and progression of prostate cancer.


Subject(s)
Macrophages/immunology , Prostatic Neoplasms/immunology , Prostatic Neoplasms/parasitology , Protozoan Proteins/immunology , Trichomonas Infections/immunology , Trichomonas vaginalis/immunology , Amino Acid Sequence , Cell Line, Tumor , Cells, Cultured , Conserved Sequence , Humans , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/immunology , MAP Kinase Signaling System/immunology , Macrophage Migration-Inhibitory Factors/genetics , Macrophage Migration-Inhibitory Factors/immunology , Macrophages/cytology , Macrophages/parasitology , Male , Molecular Sequence Data , Prostate/immunology , Prostate/parasitology , Prostate/pathology , Prostatic Neoplasms/pathology , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Sequence Homology , Trichomonas Infections/complications , Trichomonas Infections/parasitology , Trichomonas vaginalis/genetics , Trichomonas vaginalis/metabolism
3.
FASEB J ; 28(3): 1113-21, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24297697

ABSTRACT

Trichomonas vaginalis is a highly divergent, unicellular eukaryote of the phylum Metamonada, class Parabasalia, and the source of a common sexually transmitted infection. This parasite lacks mitochondria, but harbors an evolutionarily related organelle, the hydrogenosome. We explored the role of dynamin-related proteins (DRPs) in the division of the hydrogenosome. Eight DRP homologues [T. vaginalis DRPs (TvDRPs)], which can be grouped into 3 subclasses, are present in T. vaginalis. We examined 5 TvDRPs that are representative of each subclass, by introducing dominant negative mutations analogous to those known to interfere with mitochondrial division in yeast, worms, and mammals. Microscopic and cell fractionation analyses of parasites expressing one of the mutated TvDRPs (TVAG_350040) demonstrated that this protein localizes to hydrogenosomes. Moreover, these organelles were found to be increased in size and reduced in number in cells expressing this dominant negative protein, relative to parasites expressing the corresponding wild-type TvDRP, the other 4 mutant TvDRPs, or an empty vector control. Our data indicate a role for a TvDRP in the fission of T. vaginalis hydrogenosomes, similar to that described for peroxisomes and mitochondria. These findings reveal a conservation of core components involved in the division of diverse eukaryotic organelles across broad phylogenetic distances.


Subject(s)
Dynamins/physiology , Organelles/physiology , Protozoan Proteins/physiology , Trichomonas vaginalis/cytology , Amino Acid Sequence , Animals , Dynamins/chemistry , Humans , Microscopy, Electron , Molecular Sequence Data , Protozoan Proteins/chemistry , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid , Trichomonas vaginalis/ultrastructure
4.
PLoS Pathog ; 9(7): e1003482, 2013.
Article in English | MEDLINE | ID: mdl-23853596

ABSTRACT

Trichomonas vaginalis is a common sexually transmitted parasite that colonizes the human urogential tract where it remains extracellular and adheres to epithelial cells. Infections range from asymptomatic to highly inflammatory, depending on the host and the parasite strain. Here, we use a combination of methodologies including cell fractionation, immunofluorescence and electron microscopy, RNA, proteomic and cytokine analyses and cell adherence assays to examine pathogenic properties of T. vaginalis. We have found that T.vaginalis produces and secretes microvesicles with physical and biochemical properties similar to mammalian exosomes. The parasite-derived exosomes are characterized by the presence of RNA and core, conserved exosomal proteins as well as parasite-specific proteins. We demonstrate that T. vaginalis exosomes fuse with and deliver their contents to host cells and modulate host cell immune responses. Moreover, exosomes from highly adherent parasite strains increase the adherence of poorly adherent parasites to vaginal and prostate epithelial cells. In contrast, exosomes from poorly adherent strains had no measurable effect on parasite adherence. Exosomes from parasite strains that preferentially bind prostate cells increased binding of parasites to these cells relative to vaginal cells. In addition to establishing that parasite exosomes act to modulate host∶parasite interactions, these studies are the first to reveal a potential role for exosomes in promoting parasite∶parasite communication and host cell colonization.


Subject(s)
Cervix Uteri/parasitology , Epithelial Cells/parasitology , Exocytosis , Exosomes/metabolism , Host-Parasite Interactions , Prostate/parasitology , Trichomonas vaginalis/cytology , Trichomonas vaginalis/physiology , Cell Adhesion , Cell Line , Cervix Uteri/cytology , Cervix Uteri/immunology , Cervix Uteri/metabolism , Epithelial Cells/cytology , Epithelial Cells/immunology , Epithelial Cells/metabolism , Exosomes/immunology , Exosomes/ultrastructure , Female , Fluorescent Dyes/chemistry , Humans , Immunomodulation , Interleukin-6/metabolism , Interleukin-8/metabolism , Male , Membrane Fusion , Microscopy, Electron, Transmission , Prostate/cytology , Prostate/immunology , Prostate/metabolism , Tetraspanins/metabolism , Trichomonas vaginalis/immunology , Up-Regulation
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