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1.
Spectrochim Acta A Mol Biomol Spectrosc ; 57(8): 1567-86, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11471709

ABSTRACT

The infrared and Raman spectrum of 1-bromo-3-fluoropropane is reported in the gas, liquid, amorphous solid and annealed polycrystalline states. Only one of the five possible conformers is stable in the crystal, designated the C conformer. The disordered phases show the presence of several other conformers of higher energy, due entirely to conformers designated B and D. Ab initio calculations were performed as rhf/4-31g*/MIDI-4*, rhf/6-31g* and mp2/6-31g* (both frozen core and full electron correlation) for all five conformers. The scaled harmonic force field obtained using the mp2 = full/6-31g* level of the theory is reported for the most stable conformer together with an assignment of fundamentals and potential energy distributions for local symmetry coordinates. Selected computational results are reported for all conformers together with scaled and unscaled wavenumbers and infrared and Raman intensities. The temperature dependent Raman spectrum is reported from room temperature to -100 degrees C. Only three of the five possible conformers can be identified in this spectrum, and there is no evidence of the other two. The energy differences between conformers in the liquid phase were found experimentally to be 132+/-27, 232+/-46 and 106+/-30 cm(-1), respectively between the D and C, B and C and D and B conformers. These differences are substantially less than the differences calculated ab initio at the highest level of the theory used, suggesting that energy differences were decreased by large dipole-dipole interactions present in the liquid but not in the gas.


Subject(s)
Hydrocarbons, Brominated/chemistry , Hydrocarbons, Fluorinated/chemistry , Mathematical Computing , Molecular Conformation , Spectrophotometry, Infrared/methods , Spectrum Analysis, Raman/methods , Vibration
2.
Biophys J ; 75(5): 2451-60, 1998 Nov.
Article in English | MEDLINE | ID: mdl-9788940

ABSTRACT

As normally studied, in the solid state or in solution, poly(beta-benzyl-L-aspartate) (PBLA) differs from the other helical polyamino acids in that its alpha-helical conformation is most stable in the left-handed rather than in the right-handed form. The slightly lower energy per residue for the left-handed form in PBLA is easily perturbed, however. The helical screw sense can be inverted in a polar environment and, upon heating above 100 degrees C, a distorted left-handed helix or omega-helix is irreversibly formed. From external reflectance Fourier transform infrared measurements at the air-water interface, the conformation of PBLA in the monolayer state is directly established for the first time. The infrared frequencies of the amide bands suggest that right-handed alpha-helices are formed on the surface of water immediately after spreading the monolayers and independently of the polypeptide conformational distribution in the spreading solution. The right-handed helical form prevails throughout the slow compression of the Langmuir monolayers to collapsed films. The helical screw sense can be reversed by lowering the polarity of the aqueous phase. In addition, an alternate conformation similar to the omega-helix forms on addition of small amounts of isopropanol to the aqueous subphase, and appears to be an intermediate in the helix-helix transition.


Subject(s)
Aspartic Acid/analogs & derivatives , Peptides/chemistry , Polymers/chemistry , Amides/chemistry , Circular Dichroism , Esters/chemistry , Molecular Conformation , Protein Structure, Secondary , Spectroscopy, Fourier Transform Infrared , Surface Properties , Temperature
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