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1.
Food Res Int ; 97: 265-271, 2017 07.
Article in English | MEDLINE | ID: mdl-28578050

ABSTRACT

Discrimination tests are used in food companies to quantify small differences between products. Within the diversity of methods available, some are quicker to conduct, whereas others are more sensitive or statistically powerful. One class of methods includes the reminder tasks in which the reference product is given before tasting the actual test stimuli. During the task, such a 'reminder' can be compared directly to each test stimulus, or alternatively, only serve to prime the memory of the judge without being taken into account in decision-making. Previous research with trained judges provided evidence for the latter process while research with untrained consumers has provided some evidence for the former process. Two studies were conducted with untrained consumers using the A Not-AR and 2-AFCR reminder tasks. Objectives were to determine the decision strategies used in, and the relative sensitivity of the tasks. In addition, the use of an "authenticity test" was explored to see if this has a positive effect on test performance. In the first study, mayonnaise and ice tea with small stimulus differences (d'<1) were used in A Not-AR and 2-AFCR. Results were compared to those from A Not-A and 2-AFC tasks, with and without an authenticity test. It was difficult to draw clear conclusions on the decision strategy used, though the use of an authenticity test increased the sensitivity for these small differences, as it improved the performance of 6 out of 8 tests. In the second study, ice teas with larger stimulus differences (at two levels) were tested using the A Not-AR and 2-AFCR tasks, in comparison to the same-different task. The results showed that consumers use the less optimal strategies and that the authenticity test decreases performance, which is contradictory to the results of the first study. It seems that for very small stimulus differences the authenticity test can improve performance, but with larger differences the authenticity test decreases performance; it seems to confuse the judges.


Subject(s)
Consumer Behavior , Decision Making/physiology , Food/standards , Adolescent , Adult , Female , Food Industry , Humans , Male , Research Design , Taste , Tea , Young Adult
2.
J Comput Aided Mol Des ; 25(3): 203-11, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21240622

ABSTRACT

Elastic network models of biomolecules have proved to be relatively good at predicting global conformational changes particularly in large systems. Software that facilitates rapid and intuitive exploration of conformational change in elastic network models of large biomolecules in response to externally applied forces would therefore be of considerable use, particularly if the forces mimic those that arise in the interaction with a functional ligand. We have developed software that enables a user to apply forces to individual atoms of an elastic network model of a biomolecule through a haptic feedback device or a mouse. With a haptic feedback device the user feels the response to the applied force whilst seeing the biomolecule deform on the screen. Prior to the interactive session normal mode analysis is performed, or pre-calculated normal mode eigenvalues and eigenvectors are loaded. For large molecules this allows the memory and number of calculations to be reduced by employing the idea of the important subspace, a relatively small space of the first M lowest frequency normal mode eigenvectors within which a large proportion of the total fluctuation occurs. Using this approach it was possible to study GroEL on a standard PC as even though only 2.3% of the total number of eigenvectors could be used, they accounted for 50% of the total fluctuation. User testing has shown that the haptic version allows for much more rapid and intuitive exploration of the molecule than the mouse version.


Subject(s)
Molecular Dynamics Simulation , Proteins/chemistry , Software , Animals , Databases, Protein , Elasticity , Humans , User-Computer Interface
4.
Blood Cells Mol Dis ; 27(1): 249-59, 2001.
Article in English | MEDLINE | ID: mdl-11358385

ABSTRACT

Cancer arises because of genetic changes in somatic cells, eventually giving rise to overt malignancy. Principle among genetic changes found in tumor cells are chromosomal translocations which give rise to fusion genes or enforced oncogene expression. These mutations are tumor-specific and result in production of tumor-specific mRNAs and proteins and are attractive targets for therapy. Also, in acute leukemias, many of these molecules are transcription regulators which involve cell-type-specific complexes, offering an alternative therapy via interfering with protein-protein interaction. We are studying these various features of tumor cells to evaluate new therapeutic methods. We describe a mouse model of de novo chromosomal translocations using the Cre-loxP system in which interchromosomal recombination occurs between the Mll and Af9 genes. We are also developing other in vivo methods designed, like the Cre-loxP system, to emulate the effects of these chromosomal abnormalities in human tumors. In addition, we describe new technologies to facilitate the intracellular targeting of fusion mRNAs and proteins resulting from such chromosomal translocations. These include a masked antisense RNA method with the ability to discriminate between closely related RNA targets and the selection and use of intracellular antibodies to bind to target proteins in vivo and cause cell death. These approaches should also be adaptable to targeting point mutations or to differentially expressed tumor-associated proteins. We hope to develop therapeutic approaches for use in cancer therapy after testing their efficacy in our mouse models of human cancer.


Subject(s)
Disease Models, Animal , Mice/genetics , Neoplasms/therapy , Translocation, Genetic/genetics , Animals , Drug Delivery Systems/methods , Humans
5.
EMBO Rep ; 1(1): 59-64, 2000 Jul.
Article in English | MEDLINE | ID: mdl-11256626

ABSTRACT

Antisense technology has great potential for the control of RNA expression, but there remain few successful applications of the technology. Expressed antisense RNA can effectively down-regulate expression of a gene over long periods, but cannot differentiate partly identical sequences, such as the mRNA of fusion genes or those with point mutants. We have designed a structured form of expressed antisense, which can discriminate between highly similar mRNA molecules. These 'masked' antisense RNAs have most of the antisense sequence sequestered within duplex elements, leaving a short single-stranded region to initiate binding to target RNA. After contacting the correct target, the structured RNA can unravel, releasing the masked antisense region to form a stable duplex with the mRNA. We demonstrate that suitable masked antisense RNA can discriminate between the two forms of BCR-ABL mRNA that result from the Philadelphia chromosomal translocations, as well as discriminating the normal BCR and ABL mRNA.


Subject(s)
Fusion Proteins, bcr-abl/genetics , Nucleic Acid Conformation , RNA, Antisense/chemistry , RNA, Antisense/metabolism , RNA, Messenger/metabolism , Autoradiography , Blotting, Western , Electrophoresis, Polyacrylamide Gel , HeLa Cells , Humans , Nucleic Acid Hybridization , Oligonucleotides/genetics , Oligonucleotides/metabolism , RNA, Antisense/genetics , RNA, Messenger/chemistry , RNA, Messenger/genetics , Transfection
6.
Arch Otolaryngol Head Neck Surg ; 124(6): 689-94, 1998 Jun.
Article in English | MEDLINE | ID: mdl-9639480

ABSTRACT

OBJECTIVES: To inform otolaryngologists about upper airway obstruction requiring tracheotomy and other otolaryngological manifestations of malignant infantile osteopetrosis (MIOP) and to discuss pathophysiological features, management, and new treatment strategies in MIOP. DESIGN: Ongoing case series combined with a retrospective chart review. SETTING: International tertiary pediatric hospital. INTERVENTIONS: Patients with MIOP were initially referred for treatment and routine follow-up. Tracheotomy was performed to manage obstructive sleep apnea. Audiograms were also performed at regular intervals. RESULTS: The records of 9 patients were examined. The otolaryngological findings of hearing loss, obstructive sleep apnea (sometimes requiring tracheotomy), otitis media, and chronic osteomyelitis with facial fistulas were identified. CONCLUSIONS: Osteopetrosis is a rare condition caused by a failure of the osteoclast to resorb bone. This results in thickened dense, deformed, and easily fractured bone. As a result, growth failure, anemia, hypoplastic dentition, chronic infections, facial fistulas, blindness, hearing loss, nasal congestion, and upper airway obstruction may occur. The management of otolaryngological problems in a child with osteopetrosis is an important component in comprehensive care. To our knowledge, this study represents the largest case series of MIOP in the otolaryngology literature.


Subject(s)
Osteopetrosis/complications , Sleep Apnea Syndromes/etiology , Face , Female , Fistula/etiology , Hearing Loss, Bilateral/etiology , Humans , Infant , Male , Osteomyelitis/etiology , Otitis Media/etiology , Retrospective Studies , Sleep Apnea Syndromes/surgery , Tracheostomy
8.
Acad Med ; 70(3): 230-5, 1995 Mar.
Article in English | MEDLINE | ID: mdl-7873012

ABSTRACT

PURPOSE: The primary purpose of this study was to determine whether a relationship existed between the quantities of undergraduate science education completed by medical students and their subsequent preclinical performances in medical school. The secondary purpose of the study was to determine the nature of any relationship present and to re-verify standard predictors of preclinical performance in medical school. METHOD: This study was undertaken at Albany Medical College in conjunction with Sage Graduate School, Albany, New York. The analysis encompassed 120 systematically and 80 randomly selected medical student academic records (200 total cases) from the entering classes of 1977 through 1992. Twelve distinct variables were collected. Data transformations were completed as required, and the data subsequently standardized. Standard descriptive statistics, correlation between variables, t-tests between systematically and randomly selected groups, and factor analysis were performed on the data collected. RESULTS: It was determined that there was no significant relationship between total hours of undergraduate science completed and average preclinical performance in medical school. In addition, correlation between subdivisions of total hours of undergraduate science (total hours of chemistry, total hours of biology, total hours of math, and total hours of physics) and subdivisions of average preclinical performance (year-one preclinical performance and year-two preclinical performance) also proved to be nonsignificant. However, significant relationships between average preclinical performance and its subdivisions and other standard predictors of preclinical performance (Medical College Admission Test score and science grade-point average) were found to be in line with values in recent literature. In addition, significant relationships were found with the National Board of Medical Examiners Part I examination. Factor analysis of all variables yielded three underlying factors: medical school preclinical performance factor, undergraduate performance factor, and quantity of non-life-sciences factor. CONCLUSION: Quantity of science-based undergraduate premedical education, either in its entirety or in subdivisions, did not materially affect the performances of the selected medical school students in their preclinical years of medical school.


Subject(s)
Achievement , Education, Medical, Undergraduate , Science/education , Alberta , Data Collection , Education, Medical , Educational Measurement , Factor Analysis, Statistical , Humans , Predictive Value of Tests , Sampling Studies
10.
Eur J Immunol ; 21(2): 267-72, 1991 Feb.
Article in English | MEDLINE | ID: mdl-1999219

ABSTRACT

The mechanism of induction of anti-Sm antibodies by passive transfer of anti-Sm mAb in MRL/lpr mice was investigated. No idiotypic relationship was detected between the inducing monoclonal antibody KSm2 and either the induced circulating anti-Sm antibodies or the products of anti-Sm-producing hybridomas derived from spleen cell fusion of treated mice. Treatment of mice with ribonucleoprotein Sm antigen, alone or as an immune complex, induced anti-Sm and anti-ribonucleoprotein antibodies similarly to treatment with KSm2. This suggests that autoantigen contributes to the development of the anti-Sm response in MRL mice.


Subject(s)
Autoantibodies/biosynthesis , Autoantigens/immunology , Lupus Erythematosus, Systemic/immunology , Ribonucleoproteins, Small Nuclear , Animals , Antibodies, Antinuclear/biosynthesis , Antibodies, Monoclonal/immunology , Antigen-Antibody Complex/immunology , B-Lymphocytes/immunology , Cell Fusion , Disease Models, Animal , Feedback , Immunoglobulin Idiotypes/immunology , Mice , Ribonucleoproteins/immunology , Spleen/cytology , snRNP Core Proteins
12.
Clin Exp Immunol ; 67(3): 492-9, 1987 Mar.
Article in English | MEDLINE | ID: mdl-3496996

ABSTRACT

The effect of monoclonal autoantibodies on immunoregulation was investigated in MRL/MpJ-lpr/lpr mice. Passive transfer of KSm2 (a monoclonal IgG2a antibody directed against the 16 kD polypeptide of Sm) induced IgG antibodies to the other major immunoreactive polypeptides of Sm (28 and 29 kD) in all mice studied, and to polypeptides of the closely related antigen nRNP/Sm in 63% of the mice. In addition an increment in IgG anti-dsDNA antibodies, and in IgA and IgM anti-Sm antibodies, over control levels was observed. These effects were not due to polyclonal activation since anti-histone antibody levels were unaffected. Two other IgG2a monoclonal antibodies: KSm5 (directed against the 28 and 29 kD Sm polypeptides) and OX 12 (directed against an irrelevant antigen) failed to modulate the autoimmune responses of the mice in any way. These results demonstrate specific antibody-mediated connectivity between B cell clones producing autoantibodies against three distinct antigens.


Subject(s)
Antibodies, Antinuclear/biosynthesis , Autoantigens/immunology , Lupus Erythematosus, Systemic/immunology , Ribonucleoproteins, Small Nuclear , Animals , Antibodies, Monoclonal/immunology , DNA/immunology , Electrophoresis, Polyacrylamide Gel , Enzyme-Linked Immunosorbent Assay , Histones/immunology , Mice , Mice, Inbred Strains , Ribonucleoproteins/immunology , snRNP Core Proteins
13.
Clin Exp Immunol ; 65(3): 506-12, 1986 Sep.
Article in English | MEDLINE | ID: mdl-3780041

ABSTRACT

The prevalence and diversity of anti-Sm antibodies (which are a marker of human lupus) were investigated in MRL/MP-lpr/lpr mice. The low prevalence of anti-Sm reported by other workers was confirmed. Anti-Sm antibodies bound to either the 28 kD or both 28 and 16 kD polypeptides on immunoblots. Antibodies to the 16 kD polypeptide, detected on spectrotyping blots, were not detected on immunoblots probed with sera from three mice, suggesting that these antibodies were binding only to an additional conformational epitope. Isoelectric focusing of the sera showed that the anti-Sm antibodies were restricted in clonal diversity and in some cases resembled the pattern of a monoclonal antibody. A longitudinal increase in antibody titre was correlated in some mice with an increase in the diversity of clones expressing anti-Sm antibody. Anti-nRNP antibodies were also detected in the mouse serum but had a lower prevalence than anti-Sm antibodies.


Subject(s)
Aging , Autoantibodies/analysis , Autoantigens/immunology , Ribonucleoproteins, Small Nuclear , Animals , Electrophoresis, Polyacrylamide Gel , Enzyme-Linked Immunosorbent Assay , Isoelectric Focusing , Mice , Mice, Inbred Strains , snRNP Core Proteins
14.
Clin Exp Immunol ; 65(1): 42-50, 1986 Jul.
Article in English | MEDLINE | ID: mdl-3491700

ABSTRACT

The repeated administration of a monoclonal anti-Sm antibody (KSml) resulted in a significant prolongation of life in MRL-lpr/lpr lupus mice with a 50% mortality of 36 weeks compared with 18-24 weeks in the control groups. Control animals injected with APC11 (a myeloma protein of the same isotype) lived no longer than an untreated group. In addition the renal function as assessed by blood urea levels was less impaired in the KSml-injected mice than in the controls. All KSml-injected mice showed the presence of circulating anti-Sm antibodies which had a different Sm polypeptide binding specificity from that of the injected monoclonal antibody; the increased prevalence of these antibodies compared to the control mice (10-30%) suggested that the anti-Sm antibody response had been induced. The increased longevity in the KSml-treated animals was not associated with alterations in the anti-dsDNA antibody response. The data suggest that administration of anti-Sm antibodies modifies the course of murine lupus.


Subject(s)
Antibodies, Monoclonal/therapeutic use , Autoantigens/immunology , Ribonucleoproteins, Small Nuclear , Animals , Antibodies, Antinuclear , Antibody Specificity , Antigen-Antibody Complex/analysis , Complement Activating Enzymes/immunology , Complement C1q , DNA , Electrophoresis, Polyacrylamide Gel , Immunoglobulin G/immunology , Lupus Erythematosus, Systemic/immunology , Male , Mice , Mice, Inbred Strains , Urea/blood , snRNP Core Proteins
15.
J Immunol Methods ; 91(1): 65-73, 1986 Jul 11.
Article in English | MEDLINE | ID: mdl-3088125

ABSTRACT

The use of Western blotting or immunoblotting to detect autoantibodies in the serum of patients with autoimmune connective tissue diseases was investigated. An apparatus suitable for simultaneously screening 16 sera on immunoblots was used to show that a complex pattern of antibody binding polypeptides was present in whole HeLa cells. A simpler and readily interpreted pattern of binding was achieved using affinity-purified rabbit thymus antigens. Seventy-seven patients with systemic lupus erythematosus, 44 with primary Sjögren's syndrome and 50 normals were screened for anti-Sm, anti-La, anti-nRNP and anti-Jo-1 by immunoblotting and the results compared with those obtained by counterimmunoelectrophoresis and immunodiffusion. It was shown that both IgG and IgM antibodies must be analysed on immunoblots to detect the maximum number of positive sera, and that the immunoblot detects many anti-La sera which do not form precipitins.


Subject(s)
Autoantibodies/analysis , Immunosorbent Techniques/instrumentation , Lupus Erythematosus, Systemic/immunology , Ribonucleoproteins, Small Nuclear , Sjogren's Syndrome/immunology , Antibody Specificity , Arthritis, Rheumatoid/immunology , Autoantibodies/classification , Autoantigens/immunology , Autoantigens/isolation & purification , Counterimmunoelectrophoresis , Filtration/instrumentation , HeLa Cells/immunology , Histidine-tRNA Ligase/immunology , Histidine-tRNA Ligase/isolation & purification , Humans , Immunodiffusion , Molecular Weight , Ribonucleoproteins/immunology , Scleroderma, Systemic/immunology , snRNP Core Proteins , SS-B Antigen
16.
Immunology ; 58(3): 495-500, 1986 Jul.
Article in English | MEDLINE | ID: mdl-2426187

ABSTRACT

Monoclonal anti-Sm (Smith) antibodies derived from the mouse strain MRL/lpr were isolated and characterized by binding to purified antigen, immunoprecipitating characteristic uridine-rich RNAs from Hela cell extracts, and by Western blot analysis using rabbit thymus extract. Five different Sm epitopes were demonstrated by epitope blockade and probing Western blots with the monoclonal antibodies. Human anti-Sm serum inhibited each monoclonal antibody from binding to antigen, indicating that both human and mouse antibodies bind to the same Sm epitopes. Human anti-Sm antibodies bound to 28,000 and 16,000 MW polypeptides, a small number also binding to a 14,000 MW polypeptide. The monoclonal antibodies also bound to the 28,000 and/or the 16,000 polypeptide, and provided evidence to suggest that these two Sm polypeptides bear some structural similarities, but are distinct molecules.


Subject(s)
Antigens/immunology , Autoantigens/immunology , Epitopes/analysis , Lupus Erythematosus, Systemic/immunology , Ribonucleoproteins, Small Nuclear , Animals , Antibodies, Monoclonal/immunology , Autoantibodies/analysis , Binding, Competitive , Electrophoresis, Polyacrylamide Gel , Enzyme-Linked Immunosorbent Assay , Humans , Mice , Mice, Inbred Strains , RNA/immunology , snRNP Core Proteins
17.
Rheumatol Int ; 6(4): 189-92, 1986.
Article in English | MEDLINE | ID: mdl-3491411

ABSTRACT

Antibodies to nRNP, Sm and La were detected and characterised by immunoblot analysis. A comparison was made between IgG and IgM autoantibodies in 77 patients with systemic lupus erythematosus (SLE) and 50 normal subjects. No antibodies were detected in the normal subjects. In all 3 antigen specificity groups, a heterogeneity of antibody class was observed between patients. Antibodies to the 2 nRNP-specific polypeptides (33 and 67 kD) were approximately equally frequent. Although IgG antibodies to the 67 kD polypeptide were detected in 88% of patients with antibodies to this polypeptide, IgG antibodies to the 33 kD polypeptide were only detected in 43% of patients with antibodies to this polypeptide. This suggested either that anti-33 kD antibody is produced by a B cell which cannot mature to an IgG-secretor, or that anti-33 kD antibody production succeeds an initial immune response producing anti-67 kD. Reactivity with the 29 kD, Sm-specific polypeptide appeared to be the most frequent in anti-Sm sera compared with the 16 kD polypeptide suggesting that this polypeptide may be the primary immunogenic component of Sm.


Subject(s)
Antibodies, Antinuclear/immunology , Autoantibodies/immunology , Autoantigens/immunology , Lupus Erythematosus, Systemic/immunology , Ribonucleoproteins, Small Nuclear , Ribonucleoproteins , Collodion , Humans , Immunoglobulin G/immunology , Immunoglobulin M/immunology , Peptides/immunology , snRNP Core Proteins , SS-B Antigen
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