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1.
Yeast ; 18(14): 1317-30, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11571756

ABSTRACT

A small 78 codon ORF, named HTL1 (Chen et al., unpublished results), situated between loci MAK31 and HSP30 on chromosome III of Saccharomyces cerevisiae, is required for growth at 37 degrees C. In this communication, we characterize the ORF and show that disruption of HTL1, besides preventing growth at 37 degrees C, causes genetic and/or epigenetic instability at 26 degrees C: ploidy increases in about 10% of cells grown from individual disruptants and a fraction of disruptant clones are predestined to a rapid and progressive loss of fertility during growth at 26 degrees C.


Subject(s)
Chromosomes, Fungal , Open Reading Frames , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/physiology , Amino Acid Sequence , Base Sequence , Chromosome Segregation , Cloning, Molecular , Frameshift Mutation , Gene Deletion , Genes, Fungal , Genetic Complementation Test , Molecular Sequence Data , Physical Chromosome Mapping , Ploidies , Saccharomyces cerevisiae Proteins/physiology , Sequence Analysis, DNA , Temperature , Transcription, Genetic
2.
Mol Microbiol ; 35(6): 1326-34, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10760134

ABSTRACT

Agrobacterium rhizogenes transfers DNA (T-DNA) from its Ri plasmid to plant cells. All T-DNA genes are expressed in plant cells. The rolA gene is the only T-DNA gene that contains an intron in the untranslated leader region of its mRNA. This paper shows that (i) the rolA gene is also transcribed in bacteria; (ii) the 85 bp corresponding to the spliceosomal intron drives prokaryotic gene expression in agrobacteria, in free-living rhizobia and in bacteroids within root nodules; and (iii) promoter activity is abolished by the deletion of 63 bp from its 5' end and is reduced by mutations changing its sequence near the putative -10 region. The expression pattern of a chimeric reporter gene shows that, in free-living bacteria, gene expression takes place during the exponential phase of growth and increases at the onset of the stationary phase. Within root nodules, reporter gene expression occurs in the invasion, nitrogen fixing and senescent zones.


Subject(s)
Bacterial Proteins/genetics , Introns , Rhizobium/genetics , Spliceosomes/genetics , Bacterial Proteins/metabolism , Base Sequence , Cell Division/genetics , Gene Expression Regulation, Bacterial , Molecular Sequence Data , Mutation , Promoter Regions, Genetic , RNA Splicing , Rhizobium/growth & development , Transcription, Genetic , Untranslated Regions
3.
Mol Cell Biol Res Commun ; 2(3): 172-7, 1999.
Article in English | MEDLINE | ID: mdl-10662593

ABSTRACT

We have characterized the promoter region of the delta9-desaturase gene from two different strains of the dimorphic fungus Histoplasma capsulatum. Desaturase transcription is regulated in the two phases of growth: it is transcribed in the yeast phase at 37 degrees C, while it is inactive in the mycelial phase at 25 degrees C. Phase transition can be induced by shifting the temperature from 25 to 37 degrees C or by adding cAMP to the growth medium. We have identified a stress-responsive cis element (STRE) responsive to cyclic AMP (cAMP)-signaling pathway and demonstrated that this element acts in H. capsulatum. We have also identified an element, hereafter called DRE (Desaturase Regulatory Element), present in the promoters of the H. capsulatum and S. cerevisiae delta9-desaturase gene. We show that this element is necessary but not sufficient to regulate transcription of the H. capsulatum delta9-desaturase gene.


Subject(s)
Cyclic AMP/metabolism , Histoplasma/genetics , Histoplasma/metabolism , Stearoyl-CoA Desaturase/genetics , Base Sequence , DNA, Fungal/genetics , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Fungal , Genes, Fungal , Histoplasma/growth & development , Promoter Regions, Genetic , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Sequence Deletion , Signal Transduction , Temperature , Transcription, Genetic
4.
Med Mycol ; 36 Suppl 1: 45-51, 1998.
Article in English | MEDLINE | ID: mdl-9988491

ABSTRACT

Heat shock proteins (hsps) are ubiquitous families of proteins, found in all organisms studied so far. They are highly conserved across the species barrier and serve fundamental functions in cell physiology. The term 'heat shock' was adopted because of the early observation of the heat-inducible nature of these proteins, although, as it is now realized that they can be induced by a variety of stressful stimuli, it is probably more appropriate to call them 'stress proteins'. The nomenclature of many hsps, for example hsp90, hsp70 and hsp60, reflects the approximate molecular mass of hsps within each of these families. For many bacterial and parasitic infections, hsps were first recognized as immunodominant antigens on immunoblots of extracts from the organism probed with immune sera, or in T-cell proliferation assays. They have now been identified in a range of fungal pathogens, again often linked to an immune response. In this symposium, we review the association of hsps with humoral immunity to candidosis and aspergillosis, cellular immunity to histoplasmosis, and the identification of hsp70 in another dimorphic fungus, Paracoccidioides brasiliensis. Finally, the crucial role of the membrane in setting the temperature of the heat shock response in yeasts is discussed.


Subject(s)
Fungal Proteins/immunology , Fungi/immunology , Heat-Shock Proteins/immunology , Mycoses/immunology , Animals , Antibodies, Fungal/biosynthesis , Antibodies, Fungal/immunology , Cloning, Molecular , Fungal Proteins/genetics , Fungi/physiology , Genes, Fungal , Heat-Shock Proteins/genetics , Hot Temperature , Humans , Immunity, Cellular , Membrane Lipids/physiology , Mycoses/microbiology
5.
Proc Natl Acad Sci U S A ; 93(17): 9043-8, 1996 Aug 20.
Article in English | MEDLINE | ID: mdl-8799151

ABSTRACT

Zip1 is a yeast synaptonemal complex (SC) central region component and is required for normal meiotic recombination and crossover interference. Physical analysis of meiotic recombination in a zip1 mutant reveals the following: Crossovers appear later than normal and at a reduced level. Noncrossover recombinants, in contrast, seem to appear in two phases: (i) a normal number appear with normal timing and (ii) then additional products appear late, at the same time as crossovers. Also, Holliday junctions are present at unusually late times, presumably as precursors to late-appearing products. Red1 is an axial structure component required for formation of cytologically discernible axial elements and SC and maximal levels of recombination. In a red1 mutant, crossovers and noncrossovers occur at coordinately reduced levels but with normal timing. If Zip1 affected recombination exclusively via SC polymerization, a zip1 mutation should confer no recombination defect in a red1 strain background. But a red1 zip1 double mutant exhibits the sum of the two single mutant phenotypes, including the specific deficit of crossovers seen in a zip1 strain. We infer that Zip1 plays at least one role in recombination that does not involve SC polymerization along the chromosomes. Perhaps some Zip1 molecules act first in or around the sites of recombinational interactions to influence the recombination process and thence nucleate SC formation. We propose that a Zip1-dependent, pre-SC transition early in the recombination reaction is an essential component of meiotic crossover control. A molecular basis for crossover/noncrossover differentiation is also suggested.


Subject(s)
Chromosomes, Fungal , Fungal Proteins/metabolism , Recombination, Genetic , Saccharomyces cerevisiae Proteins , Synaptonemal Complex/genetics , Crossing Over, Genetic , DNA, Fungal , Fungal Proteins/genetics , Models, Genetic , Mutation , Nuclear Proteins , Nucleic Acid Conformation , Time Factors , Yeasts
6.
Proc Natl Acad Sci U S A ; 92(18): 8512-6, 1995 Aug 29.
Article in English | MEDLINE | ID: mdl-7667321

ABSTRACT

During meiosis, crossovers occur at a high level, but the level of noncrossover recombinants is even higher. The biological rationale for the existence of the latter events is not known. It has been suggested that a noncrossover-specific pathway exists specifically to mediate chromosome pairing. Using a physical assay that monitors both crossovers and noncrossovers in cultures of yeast undergoing synchronous meiosis, we find that both types of products appear at essentially the same time, after chromosomes are fully synapsed at pachytene. We have also analyzed a situation in which commitment to meiotic recombination and formation of the synaptonemal complex are coordinately suppressed (mer1 versus mer1 MER2++). We find that suppression is due primarily to restoration of meiosis-specific double-strand breaks, a characteristic of the major meiotic recombination pathway. Taken together, the observations presented suggest that there probably is no noncrossover-specific pathway and that restoration of intermediate events in a single pairing/recombination pathway promotes synaptonemal complex formation. The biological significant of noncrossover recombination remains to be determined, however.


Subject(s)
Crossing Over, Genetic , Meiosis/genetics , Recombination, Genetic , Mutation , Saccharomyces cerevisiae/genetics
7.
DNA Seq ; 5(3): 199-201, 1995.
Article in English | MEDLINE | ID: mdl-7612935

ABSTRACT

The complete nucleotide sequence of bacteriophage T4D gene 28 has been determined. Gene 28 product is a structural component of the viral baseplate for which an enzymatic activity has also been proposed.


Subject(s)
Bacteriophage T4/genetics , Carboxypeptidases/genetics , Genes, Viral , Viral Structural Proteins/genetics , Amino Acid Sequence , Base Sequence , Codon, Initiator/genetics , Models, Genetic , Molecular Sequence Data , Promoter Regions, Genetic , RNA, Antisense
8.
Virology ; 184(1): 359-69, 1991 Sep.
Article in English | MEDLINE | ID: mdl-1871975

ABSTRACT

The bacteriophage T4 DNA recombination-repair gene uvsY located at or near an origin of DNA replication and adjacent to the late base plate genes 25 and 26. Our present results reveal a complex transcription pattern in the region encompassing these genes. Most significantly, uvsY and two ORFs, downstream of it, all of which are transcribed from a middle promoter before the onset of DNA replication, are also part of a larger late transcription unit which includes the base plate genes 25 and 26. The late genes 25 and 26 are transcribed not only late, but also early from one or several early promoters further upstream. Translation, however, is inhibited by secondary structures which sequester the ribosome binding site in the early transcript. We discuss possible advantages of these transcriptional patterns for T4 DNA recombination, replication, and repair. The predicted and in vivo-expressed 23.9-kDa product of gene 26 is smaller than the reported size of gene 26 protein isolated from base plates, suggesting that nascent gp26 might be processed to a larger protein during assembly.


Subject(s)
DNA Repair , Escherichia coli/genetics , Genes, Viral , T-Phages/genetics , Transcription, Genetic , Base Sequence , Blotting, Northern , Cloning, Molecular , DNA, Viral/genetics , DNA, Viral/isolation & purification , Genetic Complementation Test , Models, Structural , Molecular Sequence Data , Nucleic Acid Conformation , Promoter Regions, Genetic , RNA Probes , RNA, Viral/genetics , RNA, Viral/isolation & purification , Restriction Mapping
10.
Virology ; 171(2): 475-83, 1989 Aug.
Article in English | MEDLINE | ID: mdl-2763463

ABSTRACT

Eight 5' ends of RNA molecules which encompass the bacteriophage T4 base plate late genes 51 to 26 region have been mapped by S1 nuclease protection and reverse transcription within a 246-bp DNA segment. Two of eight 5' ends are initiated at two absolutely conserved late promoter sites, P51 and P26a, that direct RNA synthesis on opposite strands. These two promoters share four of eight promoter sequence base pairs. A third 5' end arises from another promoter, P26b, which shows one base pair mismatch with respect to the absolutely conserved -10 sequence. All the other 5' ends arise from RNA processing and/or degradation. Since no other late transcription promoter sites were found within the base plate cluster sequence, we propose that the two overlapping late promoters, P51 and P26a, direct the expression of the T4 base plate gene cluster, included between map coordinates 114,000 and 121,038: P51 directs the transcription of genes 51, 27, 28, 29, 48, and 54 on the rDNA strand and P26a the transcription of genes 26 and 25 on the /DNA strand. This peculiar promoter configuration might account for the low level of transcription of these late genes.


Subject(s)
Genes, Viral , T-Phages/genetics , Viral Proteins/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Gene Expression Regulation , Molecular Sequence Data , Molecular Weight , Promoter Regions, Genetic , RNA, Messenger/genetics , RNA, Viral/genetics , Restriction Mapping , T-Phages/ultrastructure , Transcription, Genetic , Viral Structural Proteins
11.
Gene ; 72(1-2): 241-5, 1988 Dec 10.
Article in English | MEDLINE | ID: mdl-2468563

ABSTRACT

Dot-blot and Northern-blot experiments, using strand-specific RNA probes, show that part of the bacteriophage T4 DNA that codes for six of the base plate structural genes (gp 51, 27, 28, 29, 48 and 54), is transcribed in vivo from both DNA strands. The r DNA strand transcripts contain sequences which are translated into structural proteins. Antisense l strand RNA is about 100 fold less abundant than RNA molecules transcribed from the r DNA strand.


Subject(s)
Escherichia coli/genetics , Genes, Viral , Genes , T-Phages/genetics , Transcription, Genetic , Blotting, Northern , RNA/genetics , RNA, Antisense , Restriction Mapping , Viral Proteins/genetics
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