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2.
Proc Natl Acad Sci U S A ; 119(16): e2110156119, 2022 04 19.
Article in English | MEDLINE | ID: mdl-35412904

ABSTRACT

Identifying rates at which birders engage with different species can inform the impact and efficacy of conservation outreach and the scientific use of community-collected biodiversity data. Species that are thought to be "charismatic" are often prioritized in conservation, and previous researchers have used sociological experiments and digital records to estimate charisma indirectly. In this study, we take advantage of community science efforts as another record of human engagement with animals that can reveal observer biases directly, which are in part driven by observer preference. We apply a multistage analysis to ask whether opportunistic birders contributing to iNaturalist engage more with larger, more colorful, and rarer birds relative to a baseline approximated from eBird contributors. We find that body mass, color contrast, and range size all predict overrepresentation in the opportunistic dataset. We also find evidence that, across 472 modeled species, 52 species are significantly overreported and 158 are significantly underreported, indicating a wide variety of species-specific effects. Understanding which birds are highly engaging can aid conservationists in creating impactful outreach materials and engaging new naturalists. The quantified differences between two prominent community science efforts may also be of use for researchers leveraging the data from one or both of them to answer scientific questions of interest.


Subject(s)
Birds , Community Participation , Community-Institutional Relations , Conservation of Natural Resources , Animals , Databases, Factual , Humans , Phenotype , Species Specificity
3.
PLoS Comput Biol ; 17(3): e1008770, 2021 03.
Article in English | MEDLINE | ID: mdl-33735208

ABSTRACT

A systematic and reproducible "workflow"-the process that moves a scientific investigation from raw data to coherent research question to insightful contribution-should be a fundamental part of academic data-intensive research practice. In this paper, we elaborate basic principles of a reproducible data analysis workflow by defining 3 phases: the Explore, Refine, and Produce Phases. Each phase is roughly centered around the audience to whom research decisions, methodologies, and results are being immediately communicated. Importantly, each phase can also give rise to a number of research products beyond traditional academic publications. Where relevant, we draw analogies between design principles and established practice in software development. The guidance provided here is not intended to be a strict rulebook; rather, the suggestions for practices and tools to advance reproducible, sound data-intensive analysis may furnish support for both students new to research and current researchers who are new to data-intensive work.


Subject(s)
Computational Biology , Data Analysis , Workflow , Data Science , Humans , Software
4.
J Res Natl Inst Stand Technol ; 126: 126004, 2021.
Article in English | MEDLINE | ID: mdl-39015625

ABSTRACT

Since coverage intervals are widely used expressions of measurement uncertainty, this contribution reviews coverage intervals as defined in the Guide to the Expression of Uncertainty in Measurement (GUM), and compares them against the principal types of probabilistic intervals that are commonly used in applied statistics and in measurement science. Although formally identical to conventional confidence intervals for means, the GUM interprets coverage intervals more as if they were Bayesian credible intervals, or tolerance intervals. We focus, in particular, on a common misunderstanding about the intervals derived from the results of the Monte Carlo method of the GUM Supplement 1 (GUM-S1), and offer a novel interpretation for these intervals that we believe will foster realistic expectations about what they can deliver, and how and when they can be useful in practice.

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