ABSTRACT
During genome replication, parental histones are recycled to newly replicated DNA with their posttranslational modifications (PTMs). Whether sister chromatids inherit modified histones evenly remains unknown. We measured histone PTM partition to sister chromatids in embryonic stem cells. We found that parental histones H3-H4 segregate to both daughter DNA strands with a weak leading-strand bias, skewing partition at topologically associating domain (TAD) borders and enhancers proximal to replication initiation zones. Segregation of parental histones to the leading strand increased markedly in cells with histone-binding mutations in MCM2, part of the replicative helicase, exacerbating histone PTM sister chromatid asymmetry. This work reveals how histones are inherited to sister chromatids and identifies a mechanism by which the replication machinery ensures symmetric cell division.
Subject(s)
DNA Replication , Histone Code , Histones/metabolism , Minichromosome Maintenance Complex Component 2/metabolism , Animals , Cell Division , Cell Line , Chromatids/metabolism , Embryonic Stem Cells , Mice , Minichromosome Maintenance Complex Component 2/genetics , Protein Processing, Post-TranslationalABSTRACT
The association of histones with specific chaperone complexes is important for their folding, oligomerization, post-translational modification, nuclear import, stability, assembly and genomic localization. In this way, the chaperoning of soluble histones is a key determinant of histone availability and fate, which affects all chromosomal processes, including gene expression, chromosome segregation and genome replication and repair. Here, we review the distinct structural and functional properties of the expanding network of histone chaperones. We emphasize how chaperones cooperate in the histone chaperone network and via co-chaperone complexes to match histone supply with demand, thereby promoting proper nucleosome assembly and maintaining epigenetic information by recycling modified histones evicted from chromatin.
Subject(s)
Chromatin/physiology , Histone Chaperones/chemistry , Histone Chaperones/metabolism , Histones/metabolism , Animals , DNA Replication , Histone Chaperones/genetics , Histones/genetics , Humans , Nucleosomes/chemistry , Nucleosomes/metabolismABSTRACT
During DNA replication, chromatin is reassembled by recycling of modified old histones and deposition of new ones. How histone dynamics integrates with DNA replication to maintain genome and epigenome information remains unclear. Here, we reveal how human MCM2, part of the replicative helicase, chaperones histones H3-H4. Our first structure shows an H3-H4 tetramer bound by two MCM2 histone-binding domains (HBDs), which hijack interaction sites used by nucleosomal DNA. Our second structure reveals MCM2 and ASF1 cochaperoning an H3-H4 dimer. Mutational analyses show that the MCM2 HBD is required for MCM2-7 histone-chaperone function and normal cell proliferation. Further, we show that MCM2 can chaperone both new and old canonical histones H3-H4 as well as H3.3 and CENPA variants. The unique histone-binding mode of MCM2 thus endows the replicative helicase with ideal properties for recycling histones genome wide during DNA replication.
Subject(s)
DNA Replication , Histones/chemistry , Minichromosome Maintenance Complex Component 2/chemistry , Models, Molecular , Molecular Chaperones/chemistry , Protein Structure, Tertiary , Amino Acid Sequence , Blotting, Western , Cell Line, Tumor , Chromatin/chemistry , Chromatin/genetics , Chromatin/metabolism , DNA/chemistry , DNA/genetics , DNA/metabolism , HeLa Cells , Histones/genetics , Histones/metabolism , Humans , Minichromosome Maintenance Complex Component 2/genetics , Minichromosome Maintenance Complex Component 2/metabolism , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Molecular Sequence Data , Mutation , Nucleic Acid Conformation , Protein Binding , Protein Multimerization , RNA Interference , Sequence Homology, Amino AcidABSTRACT
During DNA replication, nucleosomes are rapidly assembled on newly synthesized DNA to restore chromatin organization. Asf1, a key histone H3-H4 chaperone required for this process, is phosphorylated by Tousled-like kinases (TLKs). Here, we identify TLK phosphorylation sites by mass spectrometry and dissect how phosphorylation has an impact on human Asf1 function. The divergent C-terminal tail of Asf1a is phosphorylated at several sites, and this is required for timely progression through S phase. Consistent with this, biochemical analysis of wild-type and phospho-mimetic Asf1a shows that phosphorylation enhances binding to histones and the downstream chaperones CAF-1 and HIRA. Moreover, we find that TLK phosphorylation of Asf1a is induced in cells experiencing deficiency of new histones and that TLK interaction with Asf1a involves its histone-binding pocket. We thus propose that TLK signalling promotes histone supply in S phase by targeting histone-free Asf1 and stimulating its ability to shuttle histones to sites of chromatin assembly.
