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1.
Eur J Gen Pract ; 29(1): 2271167, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37909317

ABSTRACT

BACKGROUND: Increasing numbers of primary care physicians (PCPs) are reducing their working hours. This decline may affect the workforce and the care provided to patients. OBJECTIVES: This scoping review aims to determine the impact of PCPs working part-time on quality of patient care. METHODS: A systematic search was conducted using the databases PubMed, CINAHL, Embase, and the Cochrane Library. Peer-reviewed, original articles with either quantitative, qualitative or mixed methods designs, published after 2000 and written in any language were considered. The search strings combined the two concepts: part-time work and primary care. Studies were included if they examined any effect of PCPs working part-time on quality of patient care. RESULTS: The initial search resulted in 2,323 unique studies. Abstracts were screened, and information from full texts on the study design, part-time and quality of patient care was extracted. The final dataset included 14 studies utilising data from 1996 onward. The studies suggest that PCPs working part-time may negatively affect patient care, particularly the access and continuity of care domains. Clinical outcomes and patient satisfaction seem mostly unaffected or even improved. CONCLUSION: There is evidence of both negative and positive effects of PCPs working part-time on quality of patient care. Approaches that mitigate negative effects of part-time work while maintaining positive effects should be implemented.


Subject(s)
Physicians, Primary Care , Humans , Patient Care , Patient Satisfaction
2.
J Health Popul Nutr ; 42(1): 122, 2023 Nov 07.
Article in English | MEDLINE | ID: mdl-37936205

ABSTRACT

BACKGROUND: Antidiabetic medication adherence is a key aspect for successful control of type 2 diabetes mellitus (T2DM). This systematic review aims to provide an overview of the associations between socioeconomic factors and antidiabetic medication adherence in individuals with T2DM. METHODS: A study protocol was established using the PRISMA checklist. A primary literature search was conducted during March 2022, searching PubMed, Embase, Web of Science, as well as WorldCat and the Bielefeld Academic Search Engine. Studies were included if published between 1990 and 2022 and included individuals with T2DM. During primary screening, one reviewer screened titles and abstracts for eligibility, while in the secondary screening, two reviewers worked independently to extract the relevant data from the full-text articles. RESULTS: A total of 15,128 studies were found in the primary search, and 102 were finally included in the review. Most studies found were cross-sectional (72) and many investigated multiple socioeconomic factors. Four subcategories of socioeconomic factors were identified: economic (70), social (74), ethnical/racial (19) and geographical (18). The majority of studies found an association with antidiabetic medication adherence for two specific factors, namely individuals' insurance status (10) and ethnicity or race (18). Other important factors were income and education. CONCLUSIONS: A large heterogeneity between studies was observed, with many studies relying on subjective data from interviewed individuals with a potential for recall bias. Several socioeconomic groups influencing medication adherence were identified, suggesting potential areas of intervention for the improvement of diabetes treatment adherence and individuals' long-term well-being.


Subject(s)
Diabetes Mellitus, Type 2 , Humans , Diabetes Mellitus, Type 2/drug therapy , Hypoglycemic Agents/therapeutic use , Ethnicity , Medication Adherence , Socioeconomic Factors
3.
Z Evid Fortbild Qual Gesundhwes ; 181: 98-100, 2023 Sep.
Article in German | MEDLINE | ID: mdl-37451929

ABSTRACT

The majority of the Swiss population is insured in a general practitioner model. mediX luzern is a network of primary care practices providing guidance and care for those insured with the general practitioner model on their patient path. The network is committed to constant quality optimization in its member practices. Interdisciplinary and interprofessional collaboration is promoted inside and outside the practice, and the interfaces between outpatient and inpatient care are optimized. In joint quality circles, medical practice guidelines and patient health information are developed. All practices are required to be certified by the Equam Foundation. The culture of error is actively encouraged as part of quality management by practicing critical incidence reporting. Lastly, research questions are discussed and data is collected in collaboration with academic centers and institutes for primary care, in particular in Zurich and Lucerne. These quality management efforts and the formation of group practices, which enable part-time work, promote the next generation of general practitioners. Even though cantons and universities provide support, further efforts will be necessary in the future to be able to continue to shape primary care services according to the population's needs.


Subject(s)
General Practitioners , Humans , Switzerland , Germany , Palliative Care
4.
EMBO Mol Med ; 15(3): e16959, 2023 03 08.
Article in English | MEDLINE | ID: mdl-36740985

ABSTRACT

The natural compound Artemisinin is the most widely used antimalarial drug worldwide. Based on its cytotoxicity, it is also used for anticancer therapy. Artemisinin and its derivates are endoperoxides that damage proteins in eukaryotic cells; their definite mechanism of action and host cell targets, however, have remained largely elusive. Using yeast and haploid stem cell screening, we demonstrate that a single cellular pathway, namely porphyrin (heme) biosynthesis, is required for the cytotoxicity of Artemisinins. Genetic or pharmacological modulation of porphyrin production is sufficient to alter its cytotoxicity in eukaryotic cells. Using multiple model systems of human brain tumor development, such as cerebral glioblastoma organoids, and patient-derived tumor spheroids, we sensitize cancer cells to dihydroartemisinin using the clinically approved porphyrin enhancer and surgical fluorescence marker 5-aminolevulinic acid, 5-ALA. A combination treatment of Artemisinins and 5-ALA markedly and specifically killed brain tumor cells in all model systems tested, including orthotopic patient-derived xenografts in vivo. These data uncover the critical molecular pathway for Artemisinin cytotoxicity and a sensitization strategy to treat different brain tumors, including drug-resistant human glioblastomas.


Subject(s)
Antimalarials , Artemisinins , Brain Neoplasms , Humans , Artemisinins/pharmacology , Artemisinins/therapeutic use , Antimalarials/pharmacology , Heme/metabolism , Aminolevulinic Acid , Brain Neoplasms/drug therapy
5.
Swiss Med Wkly ; 152: 40015, 2022 12 20.
Article in English | MEDLINE | ID: mdl-36592398

ABSTRACT

INTRODUCTION: This study explores general practitioners' (GPs') and medical specialists' perceptions of role distribution and collaboration in the care of patients with chronic conditions, exemplified by spinal cord injury. METHODS: Semi-structured interviews with GPs and medical specialists caring for individuals with spinal cord injury in Switzerland. The physicians we interviewed were recruited as part of an intervention study. We used a hybrid framework of inductive and deductive coding to analyse the qualitative data. RESULTS: Six GPs and six medical specialists agreed to be interviewed. GPs and specialists perceived the role of specialists similarly, namely as an expert and support role for GPs in the case of specialised questions. Specialists' expectations of GP services and what GPs provide differed. Specialists saw the GPs' role as complementary to their own responsibilities, namely as the first contact for patients and gatekeepers to specialised services. GPs saw themselves as care managers and guides with a holistic view of patients, connecting several healthcare professionals. GPs were looking for relations and recognition by getting to know specialists better. Specialists viewed collaboration as somewhat distant and focused on processes and patient pathways. Challenges in collaboration were related to unclear roles and responsibilities in patient care. CONCLUSION: The expectations for role distribution and responsibilities differ among physicians. Different goals of GPs and specialists for collaboration may jeopardise shared care models. The role distribution should be aligned according to patients' holistic needs to improve collaboration and provide appropriate patient care.


Subject(s)
Attitude of Health Personnel , General Practitioners , Interprofessional Relations , Physician's Role , Specialization , Spinal Cord Injuries , Humans , Chronic Disease/therapy , General Practitioners/psychology , Long-Term Care , Physician's Role/psychology , Qualitative Research , Rural Health Services , Spinal Cord Injuries/therapy , Switzerland
7.
Nat Commun ; 11(1): 3387, 2020 07 07.
Article in English | MEDLINE | ID: mdl-32636417

ABSTRACT

Biosynthesis of glycosylphosphatidylinositol (GPI) is required for anchoring proteins to the plasma membrane, and is essential for the integrity of the fungal cell wall. Here, we use a reporter gene-based screen in Saccharomyces cerevisiae for the discovery of antifungal inhibitors of GPI-anchoring of proteins, and identify the oligocyclopropyl-containing natural product jawsamycin (FR-900848) as a potent hit. The compound targets the catalytic subunit Spt14 (also referred to as Gpi3) of the fungal UDP-glycosyltransferase, the first step in GPI biosynthesis, with good selectivity over the human functional homolog PIG-A. Jawsamycin displays antifungal activity in vitro against several pathogenic fungi including Mucorales, and in vivo in a mouse model of invasive pulmonary mucormycosis due to Rhyzopus delemar infection. Our results provide a starting point for the development of Spt14 inhibitors for treatment of invasive fungal infections.


Subject(s)
Antifungal Agents/pharmacology , Glycosyltransferases/antagonists & inhibitors , Polyketides/pharmacology , Saccharomyces cerevisiae Proteins/antagonists & inhibitors , Animals , Cell Proliferation , Disease Models, Animal , Fermentation , Genes, Reporter , Glycosylphosphatidylinositols/biosynthesis , HCT116 Cells , Hep G2 Cells , Humans , Hydrogen-Ion Concentration , Inhibitory Concentration 50 , K562 Cells , Lung/microbiology , Male , Mice , Mice, Inbred ICR , Mucorales , Multigene Family , Rhizopus , Saccharomyces cerevisiae
8.
G3 (Bethesda) ; 9(3): 829-840, 2019 03 07.
Article in English | MEDLINE | ID: mdl-30670608

ABSTRACT

Gene knockout and knockdown strategies have been immensely successful probes of gene function, but small molecule inhibitors (SMIs) of gene products allow much greater time resolution and are particularly useful when the targets are essential for cell replication or survival. SMIs also serve as lead compounds for drug discovery. However, discovery of selective SMIs is costly and inefficient. The action of SMIs can be modeled simply by tagging gene products with an auxin-inducible degron (AID) that triggers rapid ubiquitylation and proteasomal degradation of the tagged protein upon exposure of live cells to auxin. To determine if this approach is broadly effective, we AID-tagged over 750 essential proteins in Saccharomyces cerevisiae and observed growth inhibition by low concentrations of auxin in over 66% of cases. Polytopic transmembrane proteins in the plasma membrane, Golgi complex, and endoplasmic reticulum were efficiently depleted if the AID-tag was exposed to cytoplasmic OsTIR1 ubiquitin ligase. The auxin analog 1-napthylacetic acid (NAA) was as potent as auxin on AID-tags, but surprisingly NAA was more potent than auxin at inhibiting target of rapamycin complex 1 (TORC1) function. Auxin also synergized with known SMIs when acting on the same essential protein, indicating that AID-tagged strains can be useful for SMI screening. Auxin synergy, resistance mutations, and cellular assays together suggest the essential GMP/GDP-mannose exchanger in the Golgi complex (Vrg4) as the target of a natural cyclic peptide of unknown function (SDZ 90-215). These findings indicate that AID-tagging can efficiently model the action of SMIs before they are discovered and can facilitate SMI discovery.


Subject(s)
Indoleacetic Acids/pharmacology , Peptides, Cyclic/pharmacology , Saccharomyces cerevisiae Proteins/antagonists & inhibitors , Saccharomyces cerevisiae/drug effects , Transcription Factors/antagonists & inhibitors , Antifungal Agents/pharmacology , Genetics, Microbial , Membrane Transport Proteins , Naphthaleneacetic Acids/pharmacology , Saccharomyces cerevisiae/metabolism
9.
Chembiochem ; 20(5): 644-649, 2019 03 01.
Article in English | MEDLINE | ID: mdl-30462880

ABSTRACT

Selective and specific inhibitors of Plasmodium falciparum lysyl-tRNA synthetase represent promising therapeutic antimalarial avenues. Cladosporin was identified as a potent P. falciparum lysyl-tRNA synthetase inhibitor, with an activity against parasite lysyl-tRNA synthetase >100-fold more potent than that of the activity registered against the human enzyme. Despite its compelling activity, cladosporin exhibits poor oral bioavailability; a critical requirement for antimalarial drugs. Thus, the quest to develop metabolically stable cladosporin-derived analogues, while retaining similar selectivity and potency to that of the natural compound, has begun. Chemogenomic profiling of a designed library allowed an entirely innovative structure-activity relationship study to be initiated; this shed light on structural evidence of a privileged scaffold with a unique activity against tRNA synthetases.


Subject(s)
Antimalarials/chemical synthesis , Drug Discovery , Enzyme Inhibitors/chemical synthesis , Isocoumarins/chemical synthesis , Lysine-tRNA Ligase/antagonists & inhibitors , Malaria, Falciparum/drug therapy , Humans , Plasmodium falciparum/enzymology , Structure-Activity Relationship
10.
ACS Chem Biol ; 12(9): 2264-2269, 2017 09 15.
Article in English | MEDLINE | ID: mdl-28796488

ABSTRACT

The microbial metabolite Chivosazole F has been described to affect the cytoskeleton and to inhibit actin polymerization in vitro. Applying orthogonal genomic and proteomics approaches, we now show for the first time that Chivosazole F exerts its effect by directly interacting with actin and demonstrate the cellular impact of Chivosazole F in an unbiased, genome-wide context in yeast and in mammalian cells. Furthermore, mutation-based resistance mapping identifies two SNPs located in the putative Chivosazole F binding site of actin. Comparing chemogenomic profiles and responses to the Chivosazole F-resistant SNPs shows a partially conserved mechanism of action for Chivosazole F and Latrunculin A, but clear divergence from Chondramide. In addition, C14orf80 is an evolutionarily highly conserved ORF, lacking any functional annotation. As editing of C14orf80 leads to Chivosazole F hyper-resistance, we propose a function for this gene product in counteracting perturbation of actin filaments.


Subject(s)
Actins/metabolism , Bridged Bicyclo Compounds, Heterocyclic/pharmacology , Depsipeptides/pharmacology , Macrolides/pharmacology , Thiazolidines/pharmacology , Actin Cytoskeleton/drug effects , Actin Cytoskeleton/genetics , Actin Cytoskeleton/metabolism , Actins/genetics , Binding Sites , Bridged Bicyclo Compounds, Heterocyclic/chemistry , Depsipeptides/chemistry , HEK293 Cells , Humans , Macrolides/chemistry , Mutation , Myxococcales/chemistry , Thiazolidines/chemistry
11.
PLoS Genet ; 12(11): e1006374, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27855158

ABSTRACT

Invasive infections by fungal pathogens cause more deaths than malaria worldwide. We found the ergoline compound NGx04 in an antifungal screen, with selectivity over mammalian cells. High-resolution chemogenomics identified the lipid transfer protein Sec14p as the target of NGx04 and compound-resistant mutations in Sec14p define compound-target interactions in the substrate binding pocket of the protein. Beyond its essential lipid transfer function in a variety of pathogenic fungi, Sec14p is also involved in secretion of virulence determinants essential for the pathogenicity of fungi such as Cryptococcus neoformans, making Sec14p an attractive antifungal target. Consistent with this dual function, we demonstrate that NGx04 inhibits the growth of two clinical isolates of C. neoformans and that NGx04-related compounds have equal and even higher potency against C. neoformans. Furthermore NGx04 analogues showed fungicidal activity against a fluconazole resistant C. neoformans strain. In summary, we present genetic evidence that NGx04 inhibits fungal Sec14p and initial data supporting NGx04 as a novel antifungal starting point.


Subject(s)
Carrier Proteins/chemistry , Cryptococcosis/drug therapy , Cryptococcus neoformans/drug effects , Ergolines/pharmacology , Lipid Metabolism/drug effects , Antifungal Agents/pharmacology , Carrier Proteins/genetics , Cryptococcosis/microbiology , Cryptococcus neoformans/genetics , Cryptococcus neoformans/pathogenicity , Ergolines/chemistry , Humans , Microbial Sensitivity Tests , Protein Conformation , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/genetics
12.
Nat Chem Biol ; 11(12): 958-66, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26479441

ABSTRACT

High-throughput screening (HTS) is an integral part of early drug discovery. Herein, we focused on those small molecules in a screening collection that have never shown biological activity despite having been exhaustively tested in HTS assays. These compounds are referred to as 'dark chemical matter' (DCM). We quantified DCM, validated it in quality control experiments, described its physicochemical properties and mapped it into chemical space. Through analysis of prospective reporter-gene assay, gene expression and yeast chemogenomics experiments, we evaluated the potential of DCM to show biological activity in future screens. We demonstrated that, despite the apparent lack of activity, occasionally these compounds can result in potent hits with unique activity and clean safety profiles, which makes them valuable starting points for lead optimization efforts. Among the identified DCM hits was a new antifungal chemotype with strong activity against the pathogen Cryptococcus neoformans but little activity at targets relevant to human safety.


Subject(s)
Antifungal Agents/pharmacology , Cryptococcus neoformans/drug effects , Drug Discovery , High-Throughput Screening Assays , Antifungal Agents/chemistry , Microbial Sensitivity Tests , Molecular Structure , Structure-Activity Relationship
13.
J Cell Sci ; 128(6): 1217-29, 2015 Mar 15.
Article in English | MEDLINE | ID: mdl-25616894

ABSTRACT

A new cyclic decadepsipeptide was isolated from Chaetosphaeria tulasneorum with potent bioactivity on mammalian and yeast cells. Chemogenomic profiling in S. cerevisiae indicated that the Sec61 translocon complex, the machinery for protein translocation and membrane insertion at the endoplasmic reticulum, is the target. The profiles were similar to those of cyclic heptadepsipeptides of a distinct chemotype (including HUN-7293 and cotransin) that had previously been shown to inhibit cotranslational translocation at the mammalian Sec61 translocon. Unbiased, genome-wide mutagenesis followed by full-genome sequencing in both fungal and mammalian cells identified dominant mutations in Sec61p (yeast) or Sec61α1 (mammals) that conferred resistance. Most, but not all, of these mutations affected inhibition by both chemotypes, despite an absence of structural similarity. Biochemical analysis confirmed inhibition of protein translocation into the endoplasmic reticulum of both co- and post-translationally translocated substrates by both chemotypes, demonstrating a mechanism independent of a translating ribosome. Most interestingly, both chemotypes were found to also inhibit SecYEG, the bacterial Sec61 translocon homolog. We suggest 'decatransin' as the name for this new decadepsipeptide translocation inhibitor.


Subject(s)
Biological Products/pharmacology , Endoplasmic Reticulum/drug effects , Membrane Proteins/metabolism , Protein Transport/drug effects , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Animals , Ascomycota/metabolism , COS Cells , Cells, Cultured , Chlorocebus aethiops , HCT116 Cells , Humans , Membrane Proteins/antagonists & inhibitors , Peptides, Cyclic/pharmacology , Polymorphism, Single Nucleotide/genetics , SEC Translocation Channels , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development
14.
Chem Biol ; 22(1): 87-97, 2015 Jan 22.
Article in English | MEDLINE | ID: mdl-25544045

ABSTRACT

The highly conserved 70 kDa heat shock proteins (Hsp70) play an integral role in proteostasis such that dysregulation has been implicated in numerous diseases. Elucidating the precise role of Hsp70 family members in the cellular context, however, has been hampered by the redundancy and intricate regulation of the chaperone network, and relatively few selective and potent tools. We have characterized a natural product, novolactone, that targets cytosolic and ER-localized isoforms of Hsp70 through a highly conserved covalent interaction at the interface between the substrate-binding and ATPase domains. Biochemical and structural analyses indicate that novolactone disrupts interdomain communication by allosterically inducing a conformational change in the Hsp70 protein to block ATP-induced substrate release and inhibit refolding activities. Thus, novolactone is a valuable tool for exploring the requirements of Hsp70 chaperones in diverse cellular contexts.


Subject(s)
Abietanes/metabolism , Biological Products/metabolism , HSP70 Heat-Shock Proteins/metabolism , Abietanes/chemistry , Adenosine Triphosphatases/metabolism , Allosteric Regulation , Binding Sites , Biological Products/chemistry , Cell Line , Crystallography, X-Ray , Endoplasmic Reticulum/metabolism , Genome, Fungal , HSP40 Heat-Shock Proteins/metabolism , HSP70 Heat-Shock Proteins/chemistry , Humans , Molecular Dynamics Simulation , Protein Binding , Protein Isoforms/chemistry , Protein Isoforms/metabolism , Protein Structure, Tertiary , Saccharomyces cerevisiae/genetics , Substrate Specificity
15.
Microbiol Res ; 169(2-3): 107-20, 2014.
Article in English | MEDLINE | ID: mdl-24360837

ABSTRACT

Due to evolutionary conservation of biology, experimental knowledge captured from genetic studies in eukaryotic model organisms provides insight into human cellular pathways and ultimately physiology. Yeast chemogenomic profiling is a powerful approach for annotating cellular responses to small molecules. Using an optimized platform, we provide the relative sensitivities of the heterozygous and homozygous deletion collections for nearly 1800 biologically active compounds. The data quality enables unique insights into pathways that are sensitive and resistant to a given perturbation, as demonstrated with both known and novel compounds. We present examples of novel compounds that inhibit the therapeutically relevant fatty acid synthase and desaturase (Fas1p and Ole1p), and demonstrate how the individual profiles facilitate hypothesis-driven experiments to delineate compound mechanism of action. Importantly, the scale and diversity of tested compounds yields a dataset where the number of modulated pathways approaches saturation. This resource can be used to map novel biological connections, and also identify functions for unannotated genes. We validated hypotheses generated by global two-way hierarchical clustering of profiles for (i) novel compounds with a similar mechanism of action acting upon microtubules or vacuolar ATPases, and (ii) an un-annotated ORF, YIL060w, that plays a role in respiration in the mitochondria. Finally, we identify and characterize background mutations in the widely used yeast deletion collection which should improve the interpretation of past and future screens throughout the community. This comprehensive resource of cellular responses enables the expansion of our understanding of eukaryotic pathway biology.


Subject(s)
Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/genetics , Antifungal Agents/pharmacology , Biosynthetic Pathways , Drug Resistance, Fungal , Gene Expression Regulation, Fungal , High-Throughput Screening Assays , Molecular Sequence Data , Phylogeny , Saccharomyces cerevisiae/classification , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae Proteins/metabolism
16.
Mol Cell ; 51(6): 829-39, 2013 Sep 26.
Article in English | MEDLINE | ID: mdl-24035500

ABSTRACT

A chemicogenetic screen was performed in budding yeast mutants that have a weakened replication stress response. This identified an inhibitor of target of rapamycin (TOR) complexes 1 and 2 that selectively enhances the sensitivity of sgs1Δ cells to hydroxyurea and camptothecin. More importantly, the inhibitor has strong synthetic lethality in combination with either the break-inducing antibiotic Zeocin or ionizing radiation, independent of the strain background. Lethality correlates with a rapid fragmentation of chromosomes that occurs only when TORC2, but not TORC1, is repressed. Genetic inhibition of Tor2 kinase, or its downstream effector kinases Ypk1/Ypk2, conferred similar synergistic effects in the presence of Zeocin. Given that Ypk1/Ypk2 controls the actin cytoskeleton, we tested the effects of actin modulators latrunculin A and jasplakinolide. These phenocopy TORC2 inhibition on Zeocin, although modulation of calcineurin-sensitive transcription does not. These results implicate TORC2-mediated actin filament regulation in the survival of low levels of DNA damage.


Subject(s)
Genomic Instability , Multiprotein Complexes/genetics , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae/genetics , TOR Serine-Threonine Kinases/genetics , Transcription Factors/genetics , Actins/antagonists & inhibitors , Actins/metabolism , Bleomycin/pharmacology , Bridged Bicyclo Compounds, Heterocyclic/pharmacology , Chromosomes/drug effects , Chromosomes/genetics , Chromosomes/radiation effects , DNA Damage/genetics , DNA Replication/drug effects , DNA Replication/radiation effects , Genomic Instability/drug effects , Genomic Instability/radiation effects , Glycogen Synthase Kinase 3/metabolism , Mechanistic Target of Rapamycin Complex 2 , Multiprotein Complexes/antagonists & inhibitors , Multiprotein Complexes/metabolism , Radiation, Ionizing , Saccharomyces cerevisiae Proteins/antagonists & inhibitors , Saccharomyces cerevisiae Proteins/metabolism , Signal Transduction/drug effects , Signal Transduction/radiation effects , TOR Serine-Threonine Kinases/antagonists & inhibitors , TOR Serine-Threonine Kinases/metabolism , Thiazolidines/pharmacology , Transcription Factors/antagonists & inhibitors , Transcription Factors/metabolism
17.
ACS Chem Biol ; 8(7): 1519-27, 2013 Jul 19.
Article in English | MEDLINE | ID: mdl-23614532

ABSTRACT

Translation initiation is an emerging target in oncology and neurobiology indications. Naturally derived and synthetic rocaglamide scaffolds have been used to interrogate this pathway; however, there is uncertainty regarding their precise mechanism(s) of action. We exploited the genetic tractability of yeast to define the primary effect of both a natural and a synthetic rocaglamide in a cellular context and characterized the molecular target using biochemical studies and in silico modeling. Chemogenomic profiling and mutagenesis in yeast identified the eIF (eukaryotic Initiation Factor) 4A helicase homologue as the primary molecular target of rocaglamides and defined a discrete set of residues near the RNA binding motif that confer resistance to both compounds. Three of the eIF4A mutations were characterized regarding their functional consequences on activity and response to rocaglamide inhibition. These data support a model whereby rocaglamides stabilize an eIF4A-RNA interaction to either alter the level and/or impair the activity of the eIF4F complex. Furthermore, in silico modeling supports the annotation of a binding pocket delineated by the RNA substrate and the residues identified from our mutagenesis screen. As expected from the high degree of conservation of the eukaryotic translation pathway, these observations are consistent with previous observations in mammalian model systems. Importantly, we demonstrate that the chemically distinct silvestrol and synthetic rocaglamides share a common mechanism of action, which will be critical for optimization of physiologically stable derivatives. Finally, these data confirm the value of the rocaglamide scaffold for exploring the impact of translational modulation on disease.


Subject(s)
Benzofurans/metabolism , Eukaryotic Initiation Factor-4F/chemistry , Eukaryotic Initiation Factor-4F/metabolism , Saccharomyces cerevisiae/metabolism , Benzofurans/chemistry , Binding Sites , Models, Biological , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/genetics , Triterpenes/chemistry , Triterpenes/metabolism
18.
Antimicrob Agents Chemother ; 57(5): 2272-80, 2013 May.
Article in English | MEDLINE | ID: mdl-23478965

ABSTRACT

High-throughput phenotypic screening against the yeast Saccharomyces cerevisiae revealed a series of triazolopyrimidine-sulfonamide compounds with broad-spectrum antifungal activity, no significant cytotoxicity, and low protein binding. To elucidate the target of this series, we have applied a chemogenomic profiling approach using the S. cerevisiae deletion collection. All compounds of the series yielded highly similar profiles that suggested acetolactate synthase (Ilv2p, which catalyzes the first common step in branched-chain amino acid biosynthesis) as a possible target. The high correlation with profiles of known Ilv2p inhibitors like chlorimuron-ethyl provided further evidence for a similar mechanism of action. Genome-wide mutagenesis in S. cerevisiae identified 13 resistant clones with 3 different mutations in the catalytic subunit of acetolactate synthase that also conferred cross-resistance to established Ilv2p inhibitors. Mapping of the mutations into the published Ilv2p crystal structure outlined the chlorimuron-ethyl binding cavity, and it was possible to dock the triazolopyrimidine-sulfonamide compound into this pocket in silico. However, fungal growth inhibition could be bypassed through supplementation with exogenous branched-chain amino acids or by the addition of serum to the medium in all of the fungal organisms tested except for Aspergillus fumigatus. Thus, these data support the identification of the triazolopyrimidine-sulfonamide compounds as inhibitors of acetolactate synthase but suggest that targeting may be compromised due to the possibility of nutrient bypass in vivo.


Subject(s)
Acetolactate Synthase/antagonists & inhibitors , Antifungal Agents/pharmacology , Pyrimidines/pharmacology , Saccharomyces cerevisiae Proteins/antagonists & inhibitors , Saccharomyces cerevisiae/drug effects , Sulfonamides/pharmacology , Sulfonylurea Compounds/pharmacology , Acetolactate Synthase/chemistry , Acetolactate Synthase/genetics , Acetolactate Synthase/metabolism , Amino Acids, Branched-Chain/metabolism , Amino Acids, Branched-Chain/pharmacology , Antifungal Agents/chemistry , Catalytic Domain/drug effects , High-Throughput Screening Assays , Humans , Microbial Sensitivity Tests , Molecular Docking Simulation , Mutation , Protein Binding , Pyrimidines/chemistry , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Serum/chemistry , Serum/metabolism , Sulfonamides/chemistry , Sulfonylurea Compounds/chemistry
19.
PLoS One ; 7(9): e42657, 2012.
Article in English | MEDLINE | ID: mdl-22970117

ABSTRACT

Argyrins, produced by myxobacteria and actinomycetes, are cyclic octapeptides with antibacterial and antitumor activity. Here, we identify elongation factor G (EF-G) as the cellular target of argyrin B in bacteria, via resistant mutant selection and whole genome sequencing, biophysical binding studies and crystallography. Argyrin B binds a novel allosteric pocket in EF-G, distinct from the known EF-G inhibitor antibiotic fusidic acid, revealing a new mode of protein synthesis inhibition. In eukaryotic cells, argyrin B was found to target mitochondrial elongation factor G1 (EF-G1), the closest homologue of bacterial EF-G. By blocking mitochondrial translation, argyrin B depletes electron transport components and inhibits the growth of yeast and tumor cells. Further supporting direct inhibition of EF-G1, expression of an argyrin B-binding deficient EF-G1 L693Q variant partially rescued argyrin B-sensitivity in tumor cells. In summary, we show that argyrin B is an antibacterial and cytotoxic agent that inhibits the evolutionarily conserved target EF-G, blocking protein synthesis in bacteria and mitochondrial translation in yeast and mammalian cells.


Subject(s)
Oligopeptides/metabolism , Peptide Elongation Factor G/metabolism , Allosteric Site , Amino Acid Sequence , Animals , Burkholderia/drug effects , Cell Line, Tumor , Conserved Sequence , Crystallography, X-Ray , Humans , Mammals , Microbial Sensitivity Tests , Mitochondrial Proteins/metabolism , Molecular Sequence Data , Mutant Proteins/chemistry , Mutant Proteins/metabolism , Oligopeptides/chemistry , Oligopeptides/pharmacology , Peptide Elongation Factor G/antagonists & inhibitors , Peptide Elongation Factor G/chemistry , Protein Binding/drug effects , Pseudomonas aeruginosa/drug effects , Saccharomyces cerevisiae/metabolism , Sequence Homology, Amino Acid
20.
Cell Host Microbe ; 11(6): 654-63, 2012 Jun 14.
Article in English | MEDLINE | ID: mdl-22704625

ABSTRACT

With renewed calls for malaria eradication, next-generation antimalarials need be active against drug-resistant parasites and efficacious against both liver- and blood-stage infections. We screened a natural product library to identify inhibitors of Plasmodium falciparum blood- and liver-stage proliferation. Cladosporin, a fungal secondary metabolite whose target and mechanism of action are not known for any species, was identified as having potent, nanomolar, antiparasitic activity against both blood and liver stages. Using postgenomic methods, including a yeast deletion strains collection, we show that cladosporin specifically inhibits protein synthesis by directly targeting P. falciparum cytosolic lysyl-tRNA synthetase. Further, cladosporin is >100-fold more potent against parasite lysyl-tRNA synthetase relative to the human enzyme, which is conferred by the identity of two amino acids within the enzyme active site. Our data indicate that lysyl-tRNA synthetase is an attractive, druggable, antimalarial target that can be selectively inhibited.


Subject(s)
Antimalarials/pharmacology , Enzyme Inhibitors/pharmacology , Fungi/chemistry , Isocoumarins/pharmacology , Lysine-tRNA Ligase/antagonists & inhibitors , Plasmodium falciparum/enzymology , Antimalarials/isolation & purification , Cell Line , Drug Evaluation, Preclinical/methods , Enzyme Inhibitors/isolation & purification , Humans , Inhibitory Concentration 50 , Isocoumarins/isolation & purification , Parasitic Sensitivity Tests , Plasmodium falciparum/drug effects , Protein Biosynthesis/drug effects , Protozoan Proteins/antagonists & inhibitors
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