Visible-light-induced direct C-H alkylation of polycyclic aromatic hydrocarbons with alkylsulfones.

Polycyclic aromatic hydrocarbons (PAHs) are fragments of graphene that have attracted considerable attention as a new class of carbon-based materials. The functionalization of edge positions in PAHs is important to enable the modulation of physical and chemical properties essential for various applications. However, straightforward methods that combine functional group tolerance and regioselectivity remain sought after. Here we report a photochemical approach for the direct alkylation of carbon-hydrogen bonds in PAHs that takes place in a regiospecific manner, an outcome that has never been achieved in related thermal reactions. A reaction mechanism involving a single electron transfer process from photo-excited PAHs to sulfones, and a rationale for the origin of regioselectivity are proposed on the basis of spectroscopic analyses and theoretical calculations.

Unimolecular Chemiexcited Oxygenation of Pathogenic Amyloids.

Pathogenic protein aggregates, called amyloids, are etiologically relevant to various diseases, including neurodegenerative Alzheimer disease. Catalytic photooxygenation of amyloids, such as amyloid-ß (Aß), reduces their toxicity; however, the requirement for light irradiation may limit its utility in large animals, including humans, due to the low tissue permeability of light. Here, we report that Cypridina luciferin analogs, dmCLA-Cl and dmCLA-Br, promoted selective oxygenation of amyloids through chemiexcitation without external light irradiation. Further structural optimization of dmCLA-Cl led to the identification of a derivative with a polar carboxylate functional group and low cellular toxicity: dmCLA-Cl-acid. dmCLA-Cl-acid promoted oxygenation of Aß amyloid and reduced its cellular toxicity without photoirradiation. The chemiexcited oxygenation developed in this study may be an effective approach to neutralizing the toxicity of amyloids, which can accumulate deep inside the body, and treating amyloidosis.

Vibrational Self-Consistent Field (VSCF) and Post-VSCF Method Calculations Combined with the Reference Interaction Site Model Self-Consistent Field Method Coupled with the Constrained Spatial Electron Density Distribution: Applications to NaHCOO in Aqueous Phase.

Investigating vibrational behavior in solution is crucial for understanding molecular dynamics within a solvent environment. Notably, the analysis of Raman spectra for molecules in solution is important owing to its ability to unveil intricate solute-solvent interactions. Previous studies have effectively employed frequency calculations utilizing the reference interaction site model self-consistent field method in conjunction with constrained spatial electron density distribution (RISM-SCF-cSED) to understand molecular vibrations in solution, primarily focusing on fundamental vibrational modes. However, the oversight of overtones and combination tones in these studies prompted us to combine the vibrational self-consistent field (VSCF) and vibrational second-order MoÌ·ller-Plesset perturbation (VMP2) methods with RISM-SCF-cSED to address these aspects theoretically. Illustrating the efficacy of this integrated approach, we computed the Raman spectra of sodium formate (NaHCOO) in water, revealing the necessity of accounting for molecular anharmonicity in solution vibrational analysis. Our findings underscore the potency of VSCF and VMP2 in conjunction with RISM-SCF-cSED as a robust theoretical framework for such calculations.

Theoretical Study of Raman Intensities of p-Nitroaniline in Different Solvent Conditions by Using a Reference Interaction Site Model Self-Consistent Field Explicitly Including Constrained Spatial Electron Density Distribution.

Raman spectroscopy is one of the most powerful tools to understand and characterize the states and structures of systems in several environments. To obtain highly accurate changes in Raman intensities of systems in solution, theoretical treatment, which can deal with not only the states and structures of systems but also the environment around molecules, proves to be significant. Hence, in this study, we developed the calculation of changes in Raman intensities of systems in different solvent conditions by using the reference interaction site model self-consistent field study explicitly including constrained spatial electron density distribution; this model is designed based on elements from both quantum mechanics and statistical mechanics. We showed that our calculation method could reproduce the changes in Raman intensities of p-nitroaniline (pNA) under different solvent conditions, including supercritical water, which has been observed in previous experimental studies. Based on the analysis of the calculation results, we observed that the ratio of the Raman intensity change of pNA in different solvent conditions is strongly correlated with the charge-transfer character of pNA.

Interpretable Attribution Assignment for Octanol-Water Partition Coefficient.

With the increasing development of machine learning models, their credibility has become an important issue. In chemistry, attribution assignment is gaining relevance when it comes to designing molecules and debugging models. However, attention has only been paid to which atoms are important in the prediction and not to whether the attribution is reasonable. In this study, we developed a graph neural network model, a highly interpretable attribution model in chemistry, and modified the integrated gradients method. The credibility of our approach was confirmed by predicting the octanol-water partition coefficient (logP) and evaluating the three metrics (accuracy, consistency, and stability) in the attribution assignment.

Theoretical Understanding of the Nonlinear Raman Shift of C≡N Stretching Vibration of p-Aminobenzonitrile in Supercritical Water.

Subcritical and supercritical fluids (SCF) have attracted significant attention in the past few decades because of their unique properties. In a previous study, a nonlinear Raman shift of the C≡N stretching vibration of p-aminobenzonitrile (p-ABN) with respect to the supercritical water (SCW) density was observed [K. Osawa et al., J. Phys. Chem. A 2009, 113, 3143-3154]. Although a plausible mechanism of the nonlinear Raman shift was proposed in the study, the discussion at the atomistic level was inadequate. To elucidate the nonlinear Raman shift mechanism of the C≡N stretching vibration of p-ABN in SCW from a theoretical viewpoint, we employed RISM-SCF-cSED, which is the hybrid method between quantum mechanics and statistical mechanics. We discovered that the hydrogen-bonding effect is dominant at low- and middle-density regions, while the packing effect is dominant at the high-density region. The balances of these effects determine the Raman shift of p-ABN in SCF.

Investigation of the metastable structures of polyiodide in acetonitrile studied using global reaction route mapping and the reference interaction site model self-consistent field explicitly including constrained spatial electron density distribution.

In this study, we theoretically analyzed the metastable structures of polyiodide (I7-) in the gas and acetonitrile phases using global reaction route mapping and the reference interaction site model self-consistent field explicitly including constrained spatial electron density distribution. From the chemical reaction pathways of I7- in acetonitrile, it was found that there would be 2 types of isomerization pathways. One proceeds with constant stoichiometry and the other takes place by breaking and forming I-I bonds. In addition, we discovered that I7- had various metastable structures within ∼10 kcal mol-1. Comparing the most stable structure in the gas and acetonitrile phases, the tetrapot type is found to be the most stable structure in the gas phase; however, it is the zigzag type in acetonitrile. In order to understand this difference, we performed the decomposition analysis of the thermal correlation term in the gas and acetonitrile phases. It was found that thermal correction plays a key role in the stability and we could explain the difference in the population of the EQ states of I7- in each phase. Overall, we revealed that the solvation effect must be one of the crucial factors to stabilize the isomers of I7- and determine the chemical reaction pathways.

Spin-Orbit Coupling Calculation Combined with the Reference Interaction Site Model Self-Consistent Field Explicitly Including Constrained Spatial Electron Density Distribution.

Studying the radiative and non-radiative decay processes of molecules in a solution is an important issue in the design of organic and functional molecules. Theoretical approaches have great potential for revealing this decay process through computation of various parameters, such as the energy surfaces at the excited state and spin-orbit coupling (SOC). The development of quantum chemical programs has enabled the calculation of SOC values to become popular for the gas phase. However, SOC calculations in solution have some difficulties that need to be overcome. In the present study, the authors combined the SOC calculations with the reference interaction site model self-consistent field explicitly including constrained spatial electron density distribution. To validate the reliability of our method, the decay process of dimethylaminobenzonitrile in cyclohexane and acetonitrile was studied. By computing the SOC values in both solution systems, the authors were able to investigate the decay process at the atomistic level. Furthermore, a natural transition orbital analysis and the measurement of the decomposed SOC values were found to provide a clear understanding of intersystem crossing.

Analytical second derivatives of the free energy in solution by the reference interaction site model self-consistent field explicitly including constrained spatial electron density distribution.

The application of analytical derivative methods to solution systems is important because several chemical reactions occur in solution. The reference interaction site model (RISM) is one of the solvation theories used to study solution systems and has shown good performance, especially in the polar solvent systems. Although the analytical first derivative based on the RISM coupled with quantum methods (RISM-SCF) has already been derived, the analytical second derivative has not been proposed yet. Therefore, in this study, the analytical second derivative was derived using RISM-SCF explicitly including constrained spatial electron density distribution (RISM-SCF-cSED). The performance of this method was validated with the Hessian calculations of formaldehyde and para-nitroaniline in solution, and the results demonstrated that the method accurately calculated frequency values at a small computational cost.

Electrostatic Potential Fitting Method Using Constrained Spatial Electron Density Expanded with Preorthogonal Natural Atomic Orbitals.

In this study, an electrostatic potential (ESP) fitting method using constrained spatial electron density (cSED) expanded with preorthogonal natural atomic orbitals (pNAOs) was proposed. In this method, the electron density of a molecule is divided into spherical atom-centered electron densities and the expansion coefficient is determined to reproduce the ESP around the molecule. Our method was then applied to two systems: (i) a hydration reaction of cis-platin and (ii) a variety of organic/inorganic molecules. By evaluating the atomic charges along the hydration reaction, our method showed good conformational transferability, which cannot be obtained using conventional ESP fitting methods. Moreover, we successfully obtained the hydration structure along the reaction by coupling our method with a reference interaction site model (RISM). Reasonable data were obtained not only for organic molecules but also for inorganic molecules. This success came from the introduction of pNAOs as auxiliary basis sets in the charge fitting.

Understanding Structural Changes through Excited-State Intramolecular Proton Transfer in 4'-N,N-Diethylamino-3-hydroxyflavone (DEAHF) in Solution Based on Quantum Chemical Calculations.

To design novel dyes with a controllable fluorescence on-off switching mechanism, understanding the dark state at the atomic level should be a key focus. In this study, we focused on the radiative and nonradiative mechanisms of 4'-N,N-diethylamino-3-hydroxyflavone (DEAHF) based on theoretical and experimental viewpoints. In the excited state, an excited-state intramolecular proton transfer (ESIPT) reaction of DEAHF occurs, and both the normal (N*) and tautomer (T*) forms exist in solution. To discuss the electronic structure changes through ESIPT, we mainly focused on two structural changes: the rotation of the diethylamino group and the bending motion of DEAHF in the excited state. The potential energy surfaces (PESs) passing through the rotation of the diethylamino group indicated that rotation may occur by thermal fluctuation during each phase. When the diethylamino group is rotated by 90° in the N* form, the oscillator strength becomes zero, which may be critical in nonradiative decay pathways. For the bending motion, we found a conical intersection, which could be a key pathway of nonradiative decay. By employing molecular orbital analysis, we concluded that the electronic structure changes induced by ESIPT play a key role in determining the decay pathways. Additionally, we compared the fluorescence quantum yield in acetonitrile with that in cyclohexane and showed that the solvent polarity also affects the radiative and nonradiative mechanisms of DEAHF.

Near infrared two-photon-excited and -emissive dyes based on a strapped excited-state intramolecular proton-transfer (ESIPT) scaffold.

Fluorophores that can undergo excited-state intramolecular proton transfer (ESIPT) represent promising scaffolds for the design of compounds that show red-shifted fluorescence. Herein, we disclose new near infrared-emissive materials based on a dialkylamine-strapped 2,5-dithienylpyrrole as an ESIPT scaffold. The introduction of electron-accepting units to the terminal positions of this scaffold generates acceptor-π-donor-π-acceptor (A-π-D-π-A) type π-conjugated compounds. Following the ESIPT, the electron-donating ability of the core scaffold increases, which results in a substantially red-shifted emission in the NIR region, while increasing the oscillator strength. The electron-accepting units play a vital role to achieve intense and red-shifted emission from the ESIPT state. The strapped dialkylamine chain that forms an intramolecular hydrogen bond is also essential to induce the ESIPT. Moreover, an extended A-π-D-π-A skeleton enables two-photon excitation with the NIR light. One of the derivatives that satisfy these features, i.e., borylethenyl-substituted 5, exhibited an intense NIR emission in polar solvents such as acetone (λem = 708 nm, ΦF = 0.55) with a strong two-photon-absorption band in the NIR region.

Theoretical Study on Nonradiative Decay of Dimethylaminobenzonitrile through Triplet State in Gas-Phase, Nonpolar, and Polar Solutions.

The control of radiative and nonradiative decay is important in the design of bioimaging molecules. Dimethylaminobenzonitrile (DMABN) is a suitable model molecule to study radiative and nonradiative decay processes and has been investigated by theoretical and experimental methods. However, an atomistic understanding of the nonradiative decay in solutions remains to be achieved. In this study, we investigated the potential-energy surfaces in excited states along the rotation of the dimethylamino group and found that the degeneration between S1 and T1 states is one of the key factors in the nonradiative decay in polar solvents. In addition, we found that the degeneration is precisely controlled by a fundamental physical property, exchange integral. Although DMABN is a simple molecule, the understanding of the nonradiative decay process on the basis of physical properties should be useful in the design of more complicated imaging molecules.

Excitation wavelength dependence of excited state intramolecular proton transfer reaction of 4'-N,N-diethylamino-3-hydroxyflavone in room temperature ionic liquids studied by optical Kerr gate fluorescence measurement.

Excited state intramolecular proton transfer reactions (ESIPT) of 4'-N,N-diethylamino-3-hydroxyflavone (DEAHF) in ionic liquids have been studied by steady-state and time-resolved fluorescence measurements at different excitation wavelengths. Steady-state measurements show the relative yield of the tautomeric form to the normal form of DEAHF decreases as excitation wavelength is increased from 380 to 450 nm. The decrease in yield is significant in ionic liquids that have cations with long alkyl chains. The extent of the decrease is correlated with the number of carbon atoms in the alkyl chains. Time-resolved fluorescence measurements using optical Kerr gate spectroscopy show that ESIPT rate has a strong excitation wavelength dependence. There is a large difference between the spectra at a 200 ps delay from different excitation wavelengths in each ionic liquid. The difference is pronounced in ionic liquids having a long alkyl chain. The equilibrium constant in the electronic excited state obtained at a 200 ps delay and the average reaction rate are also correlated with the alkyl chain length. Considering the results of the steady-state fluorescence and time-resolved measurements, the excitation wavelength dependence of ESIPT is explained by state selective excitation due to the difference of the solvation, and the number of alkyl chain carbon atoms is found to be a good indicator of the effect of inhomogeneity for this reaction.

Synthesis of 2-alkenyl- and 2-alkynyl-benzo[b]phospholes by using palladium-catalyzed cross-coupling reactions.

Heck, Stille, and Sonogashira reactions of 2-bromobenzo[b]phosphole P-oxide afforded a series of 2-alkenyl- and 2-alkynyl-benzo[b]phosphole P-oxides. The charge-transfer character of the new benzo[b]phosphole π-systems in the excited state is enhanced by the terminal electron-donating substituents. Furthermore, the C-Sn cross-coupling of the bromide was applied to the facile synthesis of a new Stille-coupling precursor, 2-stannylbenzo[b]phosphole.

Anomalous ground-state proton transfer of 4'-N,N-diethylamino-3-hydroxyflavone in ionic liquids of imidazolium-based cations with tetrafluoroborate.

We identified electronic ground state proton transfer reactions of 4'-N,N-diethylamino-3-hydroxyflavone (DEAHF) in ionic liquids (ILs) of imidazolium-based cations with tetrafluoroborate. We found unique slow dynamics of the tautomeric reaction of DEAHF in ILs of imidazolium-based cations with tetrafluoroborate.

Synthesis and structure-property relationships of 2,2'-bis(benzo[b]phosphole) and 2,2'-benzo[b]phosphole-benzo[b]heterole hybrid π systems.

The first comprehensive study of the synthesis and structure-property relationships of 2,2'-bis(benzo[b]phosphole)s and 2,2'-benzo[b]phosphole-benzo[b]heterole hybrid π systems is reported. 2-Bromobenzo[b]phosphole P-oxide underwent copper-assisted homocoupling (Ullmann coupling) and palladium-catalyzed cross-coupling (Stille coupling) to give new classes of benzo[b]phosphole derivatives. The benzo[b]phosphole-benzo[b]thiophene and -indole derivatives were further converted to P,X-bridged terphenylenes (X = S, N) by a palladium-catalyzed oxidative cycloaddition reaction with 4-octyne through the C(ß)-H activation. X-ray analyses of three compounds showed that the benzo[b]phosphole-benzo[b]heterole derivatives have coplanar π planes as a result of the effective conjugation through inter-ring C-C bonds. The π-π* transition energies and redox potentials of the cis and trans isomers of bis(benzo[b]phosphole) P-oxide are very close to each other, suggesting that their optical and electrochemical properties are little affected by the relative stereochemistry at the two phosphorus atoms. The optical properties of the benzo[b]phosphole-benzo[b]heterole hybrids are highly dependent on the benzo[b]heterole subunits. Steady-state UV/Vis absorption/fluorescence spectroscopy, fluorescence lifetime measurements, and theoretical calculations of the non-fused and acetylene-fused benzo[b]phosphole-benzo[b]heterole π systems revealed that their emissive excited states consist of two different conformers in rapid equilibrium.

Excited state intramolecular proton transfer reaction of 4'-N,N-diethylamino-3-hydroxyflavone and solvation dynamics in room temperature ionic liquids studied by optical Kerr gate fluorescence measurement.

Fluorescence dynamics of 4'-N,N-diethylamino-3-hydroxyflavone (DEAHF) and its methoxy derivative (DEAMF) in various room temperature ionic liquids (RTILs) have been studied mainly by an optical Kerr gate method. DEAMF showed a single band fluorescence whose peak shifted with time by the solvation dynamics. The averaged solvation time determined by the fluorescence peak shift was proportional to the viscosity of the solvent except for tetradecyltrihexylphosphonium bis(trifluoromethanesulfonyl)amide. The solvation times were consistent with reported values determined with different probe molecules. DEAHF showed dual fluorescence due to the normal and tautomer forms produced by the excited state intramolecular proton transfer (ESIPT), and the relative intensities were dependent on the time and the solvent cation or anion species. By using the information of the fluorescence spectrum of DEAMF, the fluorescence spectrum of DEAHF at each delay time after the photoexcitation was decomposed into the normal and the tautomer fluorescence components, respectively. The normal component showed a very fast decay simulated by a biexponential function (2-3 and 20-30 ps) with an additional slower decay component. The tautomer component showed a rise with the time constants corresponding to the faster decay of the normal form with an additional instantaneous rise. The faster dynamics of the normal and tautomer population changes were assigned to the ESIPT process, while the slower decay of the fluorescence was attributed to the population decay from the excited state through the radiative and nonradiative processes. The average ESIPT time was much faster than the averaged solvation time of RTILs. Basically, the ESIPT kinetics in RTILs is similar to those in conventional liquid solvents like acetonitrile (Chou et al. J. Phys. Chem. A 2005, 109, 3777). The faster ESIPT is interpreted in terms of the activation barrierless process from the Franck-Condon state before the solvation of the normal state in the electronic excited state. With the advance of the solvation in the excited state, the normal form becomes relatively more stable than the tautomer form, which makes the ESIPT become an activation process.