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1.
Chem Commun (Camb) ; 60(55): 7033-7036, 2024 Jul 04.
Article in English | MEDLINE | ID: mdl-38896088

ABSTRACT

Herein we describe the stoichiometric and catalytic carbene-transfer reactivity of iron(II) alkoxide complexes with iodonium ylide precursors. Treatment of PhIC(CO2Me)2 with styrene in the presence of catalytic amounts of several different Fe(OR)2(THF)2 precursors results in efficient cyclopropanation for a variety of styrenes. Computational and reactivity studies suggest a novel remote metallocarbene/vinyl radical intermediate, Fe(OR)2(κ2-(OC(OMe))2C), which could be responsible for the reactive nature of the catalyst.

2.
Molecules ; 27(18)2022 Sep 06.
Article in English | MEDLINE | ID: mdl-36144492

ABSTRACT

Treatment of Mn(N(SiMe3)2)2(THF)2 with bulky chelating bis(alkoxide) ligand [1,1':4',1''-terphenyl]-2,2''-diylbis(diphenylmethanol) (H2[O-terphenyl-O]Ph) formed a seesaw manganese(II) complex Mn[O-terphenyl-O]Ph(THF)2, characterized by structural, spectroscopic, magnetic, and analytical methods. The reactivity of Mn[O-terphenyl-O]Ph(THF)2 with various nitrene precursors was investigated. No reaction was observed between Mn[O-terphenyl-O]Ph(THF)2 and aryl azides. In contrast, the treatment of Mn[O-terphenyl-O]Ph(THF)2 with iminoiodinane PhINTs (Ts = p-toluenesulfonyl) was consistent with the formation of a metal-nitrene complex. In the presence of styrene, the reaction led to the formation of aziridine. Combining varying ratios of styrene and PhINTs in different solvents with 10 mol% of Mn[O-terphenyl-O]Ph(THF)2 at room temperature produced 2-phenylaziridine in up to a 79% yield. Exploration of the reactivity of Mn[O-terphenyl-O]Ph(THF)2 with various olefins revealed (1) moderate aziridination yields for p-substituted styrenes, irrespective of the electronic nature of the substituent; (2) moderate yield for 1,1'-disubstituted α-methylstyrene; (3) no aziridination for aliphatic α-olefins; (4) complex product mixtures for the ß-substituted styrenes. DFT calculations suggest that iminoiodinane is oxidatively added upon binding to Mn, and the resulting formal imido intermediate has a high-spin Mn(III) center antiferromagnetically coupled to an imidyl radical. This imidyl radical reacts with styrene to form a sextet intermediate that readily reductively eliminates the formation of a sextet Mn(II) aziridine complex.

3.
Dalton Trans ; 51(12): 4577-4589, 2022 Mar 22.
Article in English | MEDLINE | ID: mdl-35229862

ABSTRACT

Various valuable properties of azoarenes ("azo dyes"), including their vivid colors and their facile cis-trans photoisomerization, lead to their wide use in the chemical industry. As a result, ∼700 000 metric tons of azo dyes are produced each year. Most currently utilized synthetic methods towards azoarenes involve harsh reaction conditions and/or toxic reagents in stoichiometric amounts, which may affect selectivity and produce significant amounts of waste. An efficient alternative method towards this functional group includes transition metal catalyzed nitrene coupling. This method is generally more sustainable compared with most stoichiometric methods as it uses only catalytic amounts of co-reactants (metal catalysts), requires easily synthesizable organoazide precursors, and forms only dinitrogen as a by-product of catalysis. During the last decade, several catalytic systems were reported, and their reactivity was investigated. This perspective article will review these systems, focusing on various nitrene coupling mechanisms, and the substrate scope for each system. Particular attention will be devoted to the iron-alkoxide catalytic systems investigated in the PI's laboratory. The design and structural features of several generations of iron bis(alkoxide) complexes will be discussed, followed by the structure-activity studies of these catalysts in nitrene homo- and heterocoupling.

4.
J Inorg Biochem ; 230: 111744, 2022 05.
Article in English | MEDLINE | ID: mdl-35151097

ABSTRACT

Molybdenum in redox non-innocent ligand environments features prominently in biological inorganic systems. While Holm and coworkers, along with many other researchers, have thoroughly investigated formally high-oxidation-state molybdenum (Mo(IV)-Mo(VI)) ligated by dithiolenes, less is known about molybdenum in other formal oxidation states and/or different redox-active ligand environments. This work focuses on the investigation of low-valent molybdenum in four different redox non-innocent nitrogen ligand type environments (mononucleating and dinucleating iminopyridine, mononucleating and dinucleating bis(imino)pyridine). The reaction of iminopyridine N-(2,6-diisopropylphenyl)-1-(pyridin-2-yl)methanimine (L1) with Mo(CO)3(NCMe)3 produced Mo(L1)(CO)3(NCMe). Mo(L1)(CO)3(NCMe) undergoes transformation to Mo(L1)(CO)4 upon treatment with CS2 or prolonged stirring in dichloromethane. The reaction of the open-chain dinucleating bis(iminopyridine) ligand N,N'-(2,7-di-tert-butyl-9,9-dimethyl-9H-xanthene-4,5-diyl)bis(1-(pyridin-2-yl)methanimine) (L2) similarly produced an hexacarbonyl complex Mo2(L2)(CO)6(NCMe)2 which also underwent transformation to the octacarbonyl Mo2(L2)(CO)8. Both complexes featured anti-parallel geometry of the chelating units. The oxidation of Mo(L1)(CO)3(NCMe) with I2 resulted in Mo(L1)(CO)3I2. The reaction of mononucleating potentially tridentate bis(imino)pyridine ligand (L3) (N-mesityl-1-(6-((E)-(mesitylimino)methyl)pyridin-2-yl)methanimine) with both Mo(CO)3(NCMe)3 and Mo(CO)4(NCMe)2 produced complexes Mo(L3)(CO)3(NCMe) and Mo(L3)(CO)4 in which L3 was coordinated in a bidentate fashion, with one imino sidearm unbound. The reaction of dinucleating macrocyclic di(bis(imino)pyridine) analogue (L4) led to the similar chemistry of Mo2(L4)(CO)6(NCMe)2 and Mo2(L4)(CO)8 complexes. Treatment of Mo(L3)(CO)3(NCMe) with I2 formed a mono(carbonyl) complex Mo(L3)(CO)I2 in which molybdenum was formally oxidized and L3 underwent coordination mode change to tridentate. The electronic structures of formally Mo(0) complexes in iminopyridine and bis(imino)pyridine ligand environments were investigated by density functional theory calculations.


Subject(s)
Molybdenum , Pyridines , Crystallography, X-Ray , Electronics , Ligands , Molybdenum/chemistry , Pyridines/chemistry
5.
Acta Crystallogr E Crystallogr Commun ; 78(Pt 1): 92-96, 2022 Jan 01.
Article in English | MEDLINE | ID: mdl-35079433

ABSTRACT

A new sterically bulky chelating bis-(alkoxide) ligand 3,3'-([1,1':4',1''-terphen-yl]-2,2''-di-yl)bis-(2,2,4,4-tetra-methyl-pentan-3-ol), (H2[OO]tBu), was prepared in a two-step process as the di-chloro-methane monosolvate, C36H50O2·CH2Cl2. The first step is a Suzuki-Miyaura coupling reaction between 2-bromo-phenyl-boronic acid and 1,4-di-iodo-benzene. The resulting 2,2''-di-bromo-1,1':4',1''-terphenyl was reacted with t BuLi and hexa-methyl-acetone to obtain the desired product. The crystal structure of H2[OO]tBu revealed an anti conformation of the [CPh2(OH)] fragments relative to the central phenyl. Furthermore, the hydroxyl groups point away from each other. Likely because of this anti-anti conformation, the attempts to synthesize first-row transition-metal complexes with H2[OO]tBu were not successful.

6.
Inorg Chem ; 60(19): 14655-14666, 2021 Oct 04.
Article in English | MEDLINE | ID: mdl-34520185

ABSTRACT

In an effort to probe the feasibility of a model of Mo-Cu CODH (CODH = carbon monoxide dehydrogenase) lacking a bridging sulfido group, the new heterodinucleating ligand LH2 was designed and its Cu(I)/Mo(VI) reactivity was investigated. LH2 ((E)-3-(((5-(bis(pyridin-2-ylmethyl)amino)-2,7-di-tert-butyl-9,9-dimethyl-9H-xanthen-4-yl)imino)methyl)benzene-1,2-diol) features two different chelating positions bridged by a xanthene linker: bis(pyridyl)amine for Cu(I) and catecholate for Mo(VI). LH2 was synthesized via the initial protection of one of the amine positions, followed by two consecutive alkylations of the second position, deprotection, and condensation to attach the catechol functionality. LH2 was found to exhibit dynamic cooperativity between two reactive sites mediated by H-bonding of the catechol protons. In the free ligand, catechol protons exhibit H-bonding with imine (intramolecular) and with pyridine (intermolecular in the solid state). The reaction of LH2 with [Cu(NCMe)4]+ led to the tetradentate coordination of Cu(I) via all nitrogen donors of the ligand, including the imine. Cu(I) complexes were characterized by multinuclear NMR spectroscopy, high-resolution mass spectrometry (HRMS), X-ray crystallography, and DFT calculations. Cu(I) coordination to the imine disrupted H-bonding and caused rotation away from the catechol arm. The reaction of the Cu(I) complex [Cu(LH2)]+ with a variety of monodentate ligands X (PPh3, Cl-, SCN-, CN-) released the metal from coordination to the imine, thereby restoring imine H-bonding with the catechol proton. The second catechol proton engages in H-bonding with Cu-X (X = Cl, CN, SCN), which can be intermolecular (XRD) or intramolecular (DFT). The reaction of LH2 with molybdate [MoO4]2- led to incorporation of [MoVIO3] at the catecholate position, producing [MoO3(L)]2-. Similarly, the reaction of [Cu(LH2)]+ with [MoO4]2- formed the heterodinuclear complex [CuMoO3(L)]-. Both complexes were characterized by multinuclear NMR, UV-vis, and HRMS. HRMS in both cases confirmed the constitution of the complexes, containing molecular ions with the expected isotopic distribution.

7.
Molecules ; 25(2)2020 Jan 09.
Article in English | MEDLINE | ID: mdl-31936557

ABSTRACT

Synthesis of new chromium(II) complexes with chelating bis(alkoxide) ligand [OO]Ph (H2[OO]Ph = [1,1':4',1''-terphenyl]-2,2''-diylbis(diphenylmethanol)) and their subsequent reactivity in the context of catalytic production of carbodiimides from azides and isocyanides are described. Two different Cr(II) complexes are obtained, as a function of the crystallization solvent: mononuclear Cr[OO]Ph(THF)2 (in toluene/THF, THF = tetrahydrofuran) and dinuclear Cr2([OO]Ph)2 (in CH2Cl2/THF). The electronic structure and bonding in Cr[OO]Ph(THF)2 were probed by density functional theory calculations. Isolated Cr2([OO]Ph)2 undergoes facile reaction with 4-MeC6H4N3, 4-MeOC6H4N3, or 3,5-Me2C6H3N3 to yield diamagnetic Cr(VI) bis(imido) complexes; a structure of Cr[OO]Ph(N(4-MeC6H4))2 was confirmed by X-ray crystallography. The reaction of Cr2([OO]Ph)2 with bulkier azides N3R (MesN3, AdN3) forms paramagnetic products, formulated as Cr[OO]Ph(NR). The attempted formation of a Cr-alkylidene complex (using N2CPh2) instead forms chromium(VI) bis(diphenylmethylenehydrazido) complex Cr[OO]Ph(NNCPh2)2. Catalytic formation of carbodiimides was investigated for the azide/isocyanide mixtures containing various aryl azides and isocyanides. The formation of carbodiimides was found to depend on the nature of organoazide: whereas bulky mesitylazide led to the formation of carbodiimides with all isocyanides, no carbodiimide formation was observed for 3,5-dimethylphenylazide or 4-methylphenylazide. Treatment of Cr2([OO]Ph)2 or H2[OO]Ph with NO+ leads to the formation of [1,2-b]-dihydroindenofluorene, likely obtained via carbocation-mediated cyclization of the ligand.


Subject(s)
Chelating Agents/chemistry , Chromium/chemistry , Organometallic Compounds/chemistry , Alkanes/chemistry , Azides/chemistry , Catalysis , Chelating Agents/chemical synthesis , Crystallography, X-Ray , Ligands , Molecular Structure , Organometallic Compounds/chemical synthesis
8.
Chem Commun (Camb) ; 55(72): 10780-10783, 2019 Sep 16.
Article in English | MEDLINE | ID: mdl-31432810

ABSTRACT

New chelating bis(alkoxide) ligand H2[OO]Ph and its iron(ii) complex Fe[OO]Ph(THF)2 are described. The coordination of the ligand to the metal center is reminiscent of the coordination of two monodentate alkoxides in previously reported Fe(OR)2(THF)2 species. Fe[OO]Ph(THF)2 catalyzes selective and efficient dimerization of non-bulky aryl nitrenes to yield the corresponding azoarenes.

9.
J Vasc Interv Radiol ; 28(5): 683-687, 2017 May.
Article in English | MEDLINE | ID: mdl-28153486

ABSTRACT

PURPOSE: Transient elastography (TE) is routinely used for noninvasive staging of hepatic fibrosis. The objective of the present study was to investigate the role of TE (FibroScan) in determining changes in liver congestion in patients with Budd-Chiari syndrome (BCS) treated by endovascular interventions and determine the effects of pretreatment Meta-analysis of Histological Data in Viral Hepatitis (METAVIR) fibrosis score on posttreatment liver stiffness (LS). MATERIALS AND METHODS: Twenty-five patients undergoing endovascular procedures for treatment of BCS underwent TE immediately before and within 24 hours after the procedure. Fifteen patients available for 3-month follow-up were again subjected to TE. Mean LS values before and after intervention were compared in 12 of these patients for whom METAVIR scores were available. Pressure gradient changes across the stenosed hepatic veins/inferior vena cava were measured during the procedure. Statistical analysis of these data was performed by Wilcoxon signed-rank test, Mann-Whitney U test, and Pearson product-moment correlation coefficient. RESULTS: Significant differences were found between mean LS measurements before and within 24 hours after intervention (Z-score = 4.372) and between the mean values obtained before and 3 months after treatment (Z-score = 3.408). Mean changes in LS values after intervention in patients with METAVIR fibrosis scores ≤ 2 and > 2 were not significant. There was no correlation between changes in pressure gradients and the degree of LS. CONCLUSIONS: TE is a useful tool to assess the reduction in hepatic congestion in patients with BCS undergoing endovascular interventions.


Subject(s)
Budd-Chiari Syndrome/diagnostic imaging , Budd-Chiari Syndrome/therapy , Elasticity Imaging Techniques , Endovascular Procedures/methods , Liver Cirrhosis/diagnostic imaging , Adolescent , Adult , Child , Female , Humans , Male , Middle Aged , Treatment Outcome
10.
World J Radiol ; 8(6): 556-70, 2016 Jun 28.
Article in English | MEDLINE | ID: mdl-27358683

ABSTRACT

Extrahepatic portal vein obstruction (EHPVO) is a primary vascular condition characterized by chronic long standing blockage and cavernous transformation of portal vein with or without additional involvement of intrahepatic branches, splenic or superior mesenteric vein. Patients generally present in childhood with multiple episodes of variceal bleed and EHPVO is the predominant cause of paediatric portal hypertension (PHT) in developing countries. It is a pre-hepatic type of PHT in which liver functions and morphology are preserved till late. Characteristic imaging findings include multiple parabiliary venous collaterals which form to bypass the obstructed portal vein with resultant changes in biliary tree termed portal biliopathy or portal cavernoma cholangiopathy. Ultrasound with Doppler, computed tomography, magnetic resonance cholangiography and magnetic resonance portovenography are non-invasive techniques which can provide a comprehensive analysis of degree and extent of EHPVO, collaterals and bile duct abnormalities. These can also be used to assess in surgical planning as well screening for shunt patency in post-operative patients. The multitude of changes and complications seen in EHPVO can be addressed by various radiological interventional procedures. The myriad of symptoms arising secondary to vascular, biliary, visceral and neurocognitive changes in EHPVO can be managed by various radiological interventions like transjugular intra-hepatic portosystemic shunt, percutaneous transhepatic biliary drainage, partial splenic embolization, balloon occluded retrograde obliteration of portosystemic shunt (PSS) and revision of PSS.

11.
Indian J Urol ; 32(2): 159-60, 2016.
Article in English | MEDLINE | ID: mdl-27127362

ABSTRACT

Robotic assistance is the new dimension of minimally invasive surgery. Despite being the state-of-the-art technology, newer technical problems still occur during robotic surgeries which are not addressed in the trouble shooting manual. We report one such problem being encountered with the tip cover accessory of monopolar scissors. In the current report, we discuss the technical fault and its correction. We feel that this problem needs to be registered into the trouble-shooting manual to prevent such incidents in future.

12.
J Comput Chem ; 37(16): 1505-10, 2016 06 15.
Article in English | MEDLINE | ID: mdl-26990776

ABSTRACT

Density Functional Theory (DFT)-based Global reactivity descriptor calculations have emerged as powerful tools for studying the reactivity, selectivity, and stability of chemical and biological systems. A Python-based module, PyGlobal has been developed for systematically parsing a typical Gaussian outfile and extracting the relevant energies of the HOMO and LUMO. Corresponding global reactivity descriptors are further calculated and the data is saved into a spreadsheet compatible with applications like Microsoft Excel and LibreOffice. The efficiency of the module has been accounted by measuring the time interval for randomly selected Gaussian outfiles for 1000 molecules. © 2016 Wiley Periodicals, Inc.

13.
World J Radiol ; 8(2): 183-91, 2016 Feb 28.
Article in English | MEDLINE | ID: mdl-26981227

ABSTRACT

Xanthogranulomatous cholecystitis (XGC) is an uncommon variant of chronic cholecystitis characterized by xanthogranulomatous inflammation of the gallbladder. Intramural accumulation of lipid-laden macrophages and acute and chronic inflammatory cells is the hallmark of the disease. The xanthogranulomatous inflammation of the gallbladder can be very severe and can spill over to the neighbouring structures like liver, bowel and stomach resulting in dense adhesions, perforation, abscess formation, fistulous communication with adjacent bowel. Striking gallbladder wall thickening and dense local adhesions can be easily mistaken for carcinoma of the gallbladder, both intraoperatively as well as on preoperative imaging. Besides, cases of concomitant gallbladder carcinoma complicating XGC have also been reported in literature. So, we have done a review of the imaging features of XGC in order to better understand the entity as well as to increase the diagnostic yield of the disease summarizing the characteristic imaging findings and associations of XGC. Among other findings, presence of intramural hypodense nodules is considered diagnostic of this entity. However, in some cases, an imaging diagnosis of XGC is virtually impossible. Fine needle aspiration cytology might be handy in such patients. A preoperative counselling should include possibility of differential diagnosis of gallbladder cancer in not so characteristic cases.

14.
J Mol Graph Model ; 65: 113-28, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26973048

ABSTRACT

Nonnucleoside reverse transciptase inhibitors (NNRTI) are a class of drug molecules with a specific target of HIV-1 reverse transcriptase (RT). In the present work, we evaluated a set of selected oxazole and carboxamide derivatives to identify potential pharmacophoric features using molecular docking approach. The docking approach employed has been validated by enrichment factor calculation at top 1% (EF1%). It shows a considerable improvement in EF1%value compared to earlier reported study carried out on specific dataset of ligands and decoys for RT, in the directory of useful decoys (DUD). The carboxamide derivatives show better activity as NNRT inhibitors than oxazole derivatives. From this study, four pharmacophoric groups including a triazine ring, an aniline substituent, a benzyl amide moiety and a trimethylphenoxy substituent have been recognized and used for designing new NNRT inhibitors. Newly designed molecules show significant enhancement in docking scores over the native ligand, parent and other training set molecules. In addition, some functional groups have also been identified to assist in improving the activity of these pharmacophores. Thus a nitrile group, an amide and fluoro substitution turn out to be an important requisite for NNRT potential inhibitors.


Subject(s)
Amides/chemistry , Anti-HIV Agents/chemistry , Enzyme Inhibitors/chemistry , HIV Reverse Transcriptase/antagonists & inhibitors , HIV-1/chemistry , Isoxazoles/chemistry , Aniline Compounds/chemistry , Binding Sites , Drug Design , HIV Reverse Transcriptase/chemistry , HIV-1/enzymology , Hydrogen Bonding , Hydrophobic and Hydrophilic Interactions , Ligands , Molecular Docking Simulation , Molecular Dynamics Simulation , Mutation , Protein Binding , Protein Interaction Domains and Motifs , Protein Structure, Secondary , Static Electricity , Structure-Activity Relationship , Thermodynamics , Triazines/chemistry
15.
Spectrochim Acta A Mol Biomol Spectrosc ; 145: 239-244, 2015 Jun 15.
Article in English | MEDLINE | ID: mdl-25791880

ABSTRACT

Silver/tungsten oxide multi-layer films are deposited over quartz substrates by RF magnetron sputtering technique and the films are annealed at temperatures 200, 400 and 600°C. The effect of thermal annealing on the phase evolution of silver tungstate phase in Ag/WO3 films is studied extensively using techniques like X-ray diffraction, micro-Raman analysis, atomic force microscopy and photoluminescence studies. The XRD pattern of the as-deposited film shows only the peaks of cubic phase of silver. The film annealed at 200°C shows the presence of XRD peaks corresponding to orthorhombic phase of Ag2WO4 and peaks corresponding to cubic phase of silver with reduced intensity. It is found that, as annealing temperature increases, the volume fraction of Ag decreases and that of Ag2WO4 phase increases and becomes highest at a temperature of 400°C. When the temperature increases beyond 400°C, the volume fraction of Ag2WO4 decreases, due to its decomposition into silver and oxygen deficient phase Ag2W4O13. The micro-Raman spectra of the annealed films show the characteristic bands of tungstate phase which is in agreement with XRD analysis. The surface morphology of the films studied by atomic force microscopy reveals that the particle size and r.m.s roughness are highest for the sample annealed at 400°C. In the photoluminescence study, the films with silver tungstate phase show an emission peak in blue region centered around the wavelength 441 nm (excitation wavelength 256 nm).


Subject(s)
Oxides/chemistry , Silver/chemistry , Temperature , Tungsten Compounds/chemistry , Tungsten/chemistry , Luminescence , Microscopy, Atomic Force , Spectrum Analysis, Raman , X-Ray Diffraction
16.
J R Nav Med Serv ; 101(2): 155-9, 2015.
Article in English | MEDLINE | ID: mdl-26867417

ABSTRACT

The Primary Casualty Receiving Facility (PCRF) of the Royal Navy (RN) is currently based on Royal Fleet Auxiliary (RFA) ARGUS and provides a functioning hospital with surgical teams and a CT scanner (Role 3) within the maritime environment. The case mix could include complex trauma, critically ill patients returning to theatre several times, as well as non-battle injury procedures. This paper describes how we have used national guidelines, evidence from recent military experience, and the Clinical Guidelines for Operations (CGOs) to review and rationalise the airway equipment that is available and that would be required for the PCRF in its current configuration, whilst maintaining capability in a deployed setting.


Subject(s)
Airway Management/instrumentation , Emergency Medical Services , Naval Medicine , Adult , Humans
17.
J Am Acad Orthop Surg ; 17(1): 3-14, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19136422

ABSTRACT

Chronic Achilles tendon disorders range from overuse syndromes to frank ruptures. Numerous forms of treatment have been used, depending on the nature of the disorder or injury. Ultrasonography and magnetic resonance imaging are commonly used for evaluation. The spectrum of disease comprises paratenonitis, tendinosis, paratenonitis with tendinosis, retrocalcaneal bursitis, insertional tendinosis, and chronic rupture. However, there is no clear consensus on what defines a chronic Achilles disorder. Nonsurgical therapy is the mainstay of treatment for most patients with overuse syndromes. Surgical techniques for overuse syndromes or chronic rupture include débridement, local tissue transfer, augmentation, and synthetic grafts. Local tissue transfer most commonly employs either the flexor hallucis longus or flexor digitorum longus tendon to treat a chronic rupture. Reports on long-term outcomes are needed before useful generalizations can be made regarding treatment.


Subject(s)
Achilles Tendon/injuries , Achilles Tendon/surgery , Tendon Injuries/surgery , Bursitis/diagnosis , Bursitis/surgery , Chronic Disease , Cumulative Trauma Disorders/diagnosis , Cumulative Trauma Disorders/surgery , Diagnostic Imaging , Humans , Rupture/diagnosis , Rupture/surgery , Tendon Injuries/classification , Tendon Injuries/diagnosis , Tendon Transfer/methods
18.
Proc Natl Acad Sci U S A ; 105(50): 19768-73, 2008 Dec 16.
Article in English | MEDLINE | ID: mdl-19064908

ABSTRACT

Bovine embryos can be generated by in vitro fertilization or somatic nuclear transfer; however, these differ from their in vivo counterparts in many aspects and exhibit a higher proportion of developmental abnormalities. Here, we determined for the first time the transcriptomes of bovine metaphase II oocytes and all stages of preimplantation embryos developing in vivo up to the blastocyst using the Affymetrix GeneChip Bovine Genome Array which examines approximately 23,000 transcripts. The data show that bovine oocytes and embryos transcribed a significantly higher number of genes than somatic cells. Several hundred genes were transcribed well before the 8-cell stage, at which the major activation of the bovine genome expression occurs. Importantly, stage-specific expression patterns in 2-cell, 4-cell, and 8-cell stages, and in morulae and blastocysts, were detected, indicating dynamic changes in the embryonic transcriptome and in groups of transiently active genes. Pathway analysis revealed >120 biochemical pathways that are operative in early preimplantation bovine development. Significant differences were observed between the mRNA expression profiles of in vivo and in vitro matured oocytes, highlighting the need to include in vivo derived oocytes/embryos in studies evaluating assisted reproductive techniques. This study provides the first comprehensive analysis of gene expression and transcriptome dynamics of in vivo developing bovine embryos and will serve as a basis for improving assisted reproductive technology.


Subject(s)
Embryonic Development/genetics , Gene Expression Profiling , Gene Expression Regulation, Developmental , Animals , Cattle , Female , Genome , Multigene Family , Oligonucleotide Array Sequence Analysis , Oocytes/metabolism , Transcription, Genetic
19.
Lab Chip ; 6(7): 840-2, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16804586

ABSTRACT

We demonstrate a chemical and biological sensing mechanism in microfluidics that transduces chemical and biological signals to electrical signals with large intrinsic amplification without need for complex electronics. The sensing mechanism involves a dissolvable membrane separating a liquid sample chamber from an interdigitated electrode. Dissolution of the membrane (here, a disulfide cross-linked poly(acrylamide) hydrogel) in the presence of a specific target (here, a reducing agent-dithiothreitol) allows the target solution to flow into contact with the electrode. The liquid movement displaces the air dielectric with a liquid, leading to a change (open circuit to approximately 1 kOmega) in the resistance between the electrodes. Thus, a biochemical event is transduced into an electrical signal via fluid movement. The concentration of the target is estimated by monitoring the difference in dissolution times of two juxtaposed sensing membranes having different dissolution characteristics. No dc power is consumed by the sensor until detection of the target. A range of targets could be sensed by defining membranes specific to the target. This sensing mechanism might find applications in sensing targets such as toxins, which exhibit enzymatic activity.


Subject(s)
Biosensing Techniques/instrumentation , Membranes, Artificial , Microfluidic Analytical Techniques/instrumentation , Acrylic Resins/chemistry , Biosensing Techniques/methods , Disulfides/chemistry , Electrodes , Hydrogels/chemistry , Microfluidic Analytical Techniques/methods
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