Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 14 de 14
Filter
Add more filters










Publication year range
1.
Evol Comput ; 30(1): 1-26, 2022 Mar 01.
Article in English | MEDLINE | ID: mdl-34623436

ABSTRACT

Niching methods have been developed to maintain the population diversity, to investigate many peaks in parallel, and to reduce the effect of genetic drift. We present the first rigorous runtime analyses of restricted tournament selection (RTS), embedded in a (µ+1) EA, and analyse its effectiveness at finding both optima of the bimodal function TwoMax. In RTS, an offspring competes against the closest individual, with respect to some distance measure, amongst w (window size) population members (chosen uniformly at random with replacement), to encourage competition within the same niche. We prove that RTS finds both optima on TwoMax efficiently if the window size w is large enough. However, if w is too small, RTS fails to find both optima even in exponential time, with high probability. We further consider a variant of RTS selecting individuals for the tournament without replacement. It yields a more diverse tournament and is more effective at preventing one niche from taking over the other. However, this comes at the expense of a slower progress towards optima when a niche collapses to a single individual. Our theoretical results are accompanied by experimental studies that shed light on parameters not covered by the theoretical results and support a conjectured lower runtime bound.


Subject(s)
Algorithms , Biological Evolution , Humans
2.
Evol Comput ; 27(3): 403-433, 2019.
Article in English | MEDLINE | ID: mdl-29746158

ABSTRACT

Clearing is a niching method inspired by the principle of assigning the available resources among a niche to a single individual. The clearing procedure supplies these resources only to the best individual of each niche: the winner. So far, its analysis has been focused on experimental approaches that have shown that clearing is a powerful diversity-preserving mechanism. Using rigorous runtime analysis to explain how and why it is a powerful method, we prove that a mutation-based evolutionary algorithm with a large enough population size, and a phenotypic distance function always succeeds in optimising all functions of unitation for small niches in polynomial time, while a genotypic distance function requires exponential time. Finally, we prove that with phenotypic and genotypic distances, clearing is able to find both optima for TwoMax and several general classes of bimodal functions in polynomial expected time. We use empirical analysis to highlight some of the characteristics that makes it a useful mechanism and to support the theoretical results.


Subject(s)
Algorithms , Computational Biology/methods , Biodiversity , Biological Evolution , Computer Simulation , Ecosystem , Genetic Fitness , Genotype , Markov Chains , Mathematical Concepts , Mutation , Phenotype , Population Density
3.
Algorithmica ; 80(5): 1604-1633, 2018.
Article in English | MEDLINE | ID: mdl-30996504

ABSTRACT

Escaping local optima is one of the major obstacles to function optimisation. Using the metaphor of a fitness landscape, local optima correspond to hills separated by fitness valleys that have to be overcome. We define a class of fitness valleys of tunable difficulty by considering their length, representing the Hamming path between the two optima and their depth, the drop in fitness. For this function class we present a runtime comparison between stochastic search algorithms using different search strategies. The ( 1 + 1 ) EA is a simple and well-studied evolutionary algorithm that has to jump across the valley to a point of higher fitness because it does not accept worsening moves (elitism). In contrast, the Metropolis algorithm and the Strong Selection Weak Mutation (SSWM) algorithm, a famous process in population genetics, are both able to cross the fitness valley by accepting worsening moves. We show that the runtime of the ( 1 + 1 ) EA depends critically on the length of the valley while the runtimes of the non-elitist algorithms depend crucially on the depth of the valley. Moreover, we show that both SSWM and Metropolis can also efficiently optimise a rugged function consisting of consecutive valleys.

4.
Algorithmica ; 78(2): 714-740, 2017.
Article in English | MEDLINE | ID: mdl-32103848

ABSTRACT

Understanding which function classes are easy and which are hard for a given algorithm is a fundamental question for the analysis and design of bio-inspired search heuristics. A natural starting point is to consider the easiest and hardest functions for an algorithm. For the (1+1) EA using standard bit mutation (SBM) it is well known that OneMax is an easiest function with unique optimum while Trap is a hardest. In this paper we extend the analysis of easiest function classes to the contiguous somatic hypermutation (CHM) operator used in artificial immune systems. We define a function MinBlocks and prove that it is an easiest function for the (1+1) EA using CHM, presenting both a runtime and a fixed budget analysis. Since MinBlocks is, up to a factor of 2, a hardest function for standard bit mutations, we consider the effects of combining both operators into a hybrid algorithm. We rigorously prove that by combining the advantages of k operators, several hybrid algorithmic schemes have optimal asymptotic performance on the easiest functions for each individual operator. In particular, the hybrid algorithms using CHM and SBM have optimal asymptotic performance on both OneMax and MinBlocks. We then investigate easiest functions for hybrid schemes and show that an easiest function for a hybrid algorithm is not just a trivial weighted combination of the respective easiest functions for each operator.

5.
Evol Comput ; 25(2): 205-236, 2017.
Article in English | MEDLINE | ID: mdl-26469220

ABSTRACT

Geometric crossover is a formal class of crossovers that includes many well-known recombination operators across representations. In previous work, it was shown that all evolutionary algorithms with geometric crossover (but no mutation) do the same form of convex search regardless of the underlying representation, the specific selection mechanism, offspring distribution, search space, and problem at hand. Furthermore, it was suggested that the generalised convex search could perform well on generalised forms of concave and approximately concave fitness landscapes regardless of the underlying space and representation. In this article, we deepen this line of enquiry and study the runtime of generalised convex search on concave fitness landscapes. This is a first step toward linking a geometric theory of representations and runtime analysis in the attempt to (1) set the basis for a more general, unified approach for the runtime analysis of evolutionary algorithms across representations, and (2) identify the essential matching features of evolutionary search behaviour and landscape topography that cause polynomial performance. We present a general runtime result that can be systematically instantiated to specific search spaces and representations and present its specifications to three search spaces. As a corollary, we obtain that the convex search algorithm optimises LeadingOnes in [Formula: see text] fitness evaluations, which is faster than all unbiased unary black box algorithms.


Subject(s)
Algorithms , Biological Evolution , Humans , Models, Biological , Mutation , Selection, Genetic
6.
Evol Comput ; 25(2): 237-274, 2017.
Article in English | MEDLINE | ID: mdl-26581016

ABSTRACT

We reinvestigate a fundamental question: How effective is crossover in genetic algorithms in combining building blocks of good solutions? Although this has been discussed controversially for decades, we are still lacking a rigorous and intuitive answer. We provide such answers for royal road functions and OneMax, where every bit is a building block. For the latter, we show that using crossover makes every ([Formula: see text]+[Formula: see text]) genetic algorithm at least twice as fast as the fastest evolutionary algorithm using only standard bit mutation, up to small-order terms and for moderate [Formula: see text] and [Formula: see text]. Crossover is beneficial because it can capitalize on mutations that have both beneficial and disruptive effects on building blocks: crossover is able to repair the disruptive effects of mutation in later generations. Compared to mutation-based evolutionary algorithms, this makes multibit mutations more useful. Introducing crossover changes the optimal mutation rate on OneMax from [Formula: see text] to [Formula: see text]. This holds both for uniform crossover and k-point crossover. Experiments and statistical tests confirm that our findings apply to a broad class of building block functions.


Subject(s)
Algorithms , Biological Evolution , Crossing Over, Genetic/genetics , Models, Genetic , Humans , Mutation Rate
7.
Genetics ; 205(2): 803-825, 2017 02.
Article in English | MEDLINE | ID: mdl-27881471

ABSTRACT

Adaptation depends critically on the effects of new mutations and their dependency on the genetic background in which they occur. These two factors can be summarized by the fitness landscape. However, it would require testing all mutations in all backgrounds, making the definition and analysis of fitness landscapes mostly inaccessible. Instead of postulating a particular fitness landscape, we address this problem by considering general classes of landscapes and calculating an upper limit for the time it takes for a population to reach a fitness peak, circumventing the need to have full knowledge about the fitness landscape. We analyze populations in the weak-mutation regime and characterize the conditions that enable them to quickly reach the fitness peak as a function of the number of sites under selection. We show that for additive landscapes there is a critical selection strength enabling populations to reach high-fitness genotypes, regardless of the distribution of effects. This threshold scales with the number of sites under selection, effectively setting a limit to adaptation, and results from the inevitable increase in deleterious mutational pressure as the population adapts in a space of discrete genotypes. Furthermore, we show that for the class of all unimodal landscapes this condition is sufficient but not necessary for rapid adaptation, as in some highly epistatic landscapes the critical strength does not depend on the number of sites under selection; effectively removing this barrier to adaptation.


Subject(s)
Adaptation, Physiological/genetics , Genetic Fitness , Models, Genetic , Selection, Genetic
8.
Evol Comput ; 25(4): 673-705, 2017.
Article in English | MEDLINE | ID: mdl-27893278

ABSTRACT

Randomized search heuristics are frequently applied to NP-hard combinatorial optimization problems. The runtime analysis of randomized search heuristics has contributed tremendously to our theoretical understanding. Recently, randomized search heuristics have been examined regarding their achievable progress within a fixed-time budget. We follow this approach and present a fixed-budget analysis for an NP-hard combinatorial optimization problem. We consider the well-known Traveling Salesperson Problem (TSP) and analyze the fitness increase that randomized search heuristics are able to achieve within a given fixed-time budget. In particular, we analyze Manhattan and Euclidean TSP instances and Randomized Local Search (RLS), (1+1) EA and (1+[Formula: see text]) EA algorithms for the TSP in a smoothed complexity setting, and derive the lower bounds of the expected fitness gain for a specified number of generations.


Subject(s)
Heuristics , Models, Theoretical , Random Allocation
9.
J Theor Biol ; 383: 28-43, 2015 Oct 21.
Article in English | MEDLINE | ID: mdl-26215686

ABSTRACT

The theory of population genetics and evolutionary computation have been evolving separately for nearly 30 years. Many results have been independently obtained in both fields and many others are unique to its respective field. We aim to bridge this gap by developing a unifying framework for evolutionary processes that allows both evolutionary algorithms and population genetics models to be cast in the same formal framework. The framework we present here decomposes the evolutionary process into its several components in order to facilitate the identification of similarities between different models. In particular, we propose a classification of evolutionary operators based on the defining properties of the different components. We cast several commonly used operators from both fields into this common framework. Using this, we map different evolutionary and genetic algorithms to different evolutionary regimes and identify candidates with the most potential for the translation of results between the fields. This provides a unified description of evolutionary processes and represents a stepping stone towards new tools and results to both fields.


Subject(s)
Biological Evolution , Models, Genetic , Algorithms , Animals , Genetics, Population , Population Dynamics
10.
Evol Comput ; 23(4): 559-82, 2015.
Article in English | MEDLINE | ID: mdl-26066804

ABSTRACT

The migration interval is one of the fundamental parameters governing the dynamic behaviour of island models. Yet, there is little understanding on how this parameter affects performance, and how to optimally set it given a problem in hand. We propose schemes for adapting the migration interval according to whether fitness improvements have been found. As long as no improvement is found, the migration interval is increased to minimise communication. Once the best fitness has improved, the migration interval is decreased to spread new best solutions more quickly. We provide a method for obtaining upper bounds on the expected running time and the communication effort, defined as the expected number of migrants sent. Example applications of this method to common example functions show that our adaptive schemes are able to compete with, or even outperform, the optimal fixed choice of the migration interval, with regard to running time and communication effort.


Subject(s)
Algorithms , Biological Evolution , Communication , Computational Biology , Computer Simulation , Human Migration/statistics & numerical data , Humans , Models, Biological , Models, Statistical , Time Factors
11.
Evol Comput ; 22(3): 405-37, 2014.
Article in English | MEDLINE | ID: mdl-24195490

ABSTRACT

We present a general method for analyzing the runtime of parallel evolutionary algorithms with spatially structured populations. Based on the fitness-level method, it yields upper bounds on the expected parallel runtime. This allows for a rigorous estimate of the speedup gained by parallelization. Tailored results are given for common migration topologies: ring graphs, torus graphs, hypercubes, and the complete graph. Example applications for pseudo-Boolean optimization show that our method is easy to apply and that it gives powerful results. In our examples the performance guarantees improve with the density of the topology. Surprisingly, even sparse topologies such as ring graphs lead to a significant speedup for many functions while not increasing the total number of function evaluations by more than a constant factor. We also identify which number of processors lead to the best guaranteed speedups, thus giving hints on how to parameterize parallel evolutionary algorithms.


Subject(s)
Algorithms , Computing Methodologies , Models, Theoretical , Time Factors
12.
Evol Comput ; 21(1): 1-27, 2013.
Article in English | MEDLINE | ID: mdl-22035497

ABSTRACT

Extending previous analyses on function classes like linear functions, we analyze how the simple (1+1) evolutionary algorithm optimizes pseudo-Boolean functions that are strictly monotonic. These functions have the property that whenever only 0-bits are changed to 1, then the objective value strictly increases. Contrary to what one would expect, not all of these functions are easy to optimize. The choice of the constant c in the mutation probability p(n) = c/n can make a decisive difference. We show that if c < 1, then the (1+1) EA finds the optimum of every such function in Θ(n log n) iterations. For c = 1, we can still prove an upper bound of O(n(3/2)). However, for c ≥ 16, we present a strictly monotonic function such that the (1+1) EA with overwhelming probability needs 2(Ω(n)) iterations to find the optimum. This is the first time that we observe that a constant factor change of the mutation probability changes the runtime by more than a constant factor.


Subject(s)
Algorithms , Mutation Rate
13.
Evol Comput ; 18(1): 1-26, 2010.
Article in English | MEDLINE | ID: mdl-20064023

ABSTRACT

Evolutionary algorithms are general randomized search heuristics and typically perform an unbiased random search that is guided only by the fitness of the search points encountered. However, in applications there is often problem-specific knowledge that suggests some additional bias. The use of appropriately biased variation operators may speed up the search considerably. Problems defined over bit strings of finite length often have the property that good solutions have only very few 1-bits or very few 0-bits. A mutation operator tailored toward such situations is studied under different perspectives and in a rigorous way discussing its assets and drawbacks. We consider the runtime of evolutionary algorithms using biased mutations on illustrative example functions as well as on function classes. A comparison with unbiased operators shows on which functions biased mutations lead to a speedup, on which functions biased mutations increase the runtime, and in which settings there is almost no difference in performance. The main focus is on theoretical runtime analysis yielding asymptotic results. These findings are accompanied by the results of empirical investigations that deliver additional insights.


Subject(s)
Algorithms , Models, Theoretical , Search Engine/methods , Computer Simulation , Time Factors
14.
Evol Comput ; 17(4): 455-76, 2009.
Article in English | MEDLINE | ID: mdl-19916783

ABSTRACT

Maintaining diversity is important for the performance of evolutionary algorithms. Diversity-preserving mechanisms can enhance global exploration of the search space and enable crossover to find dissimilar individuals for recombination. We focus on the global exploration capabilities of mutation-based algorithms. Using a simple bimodal test function and rigorous runtime analyses, we compare well-known diversity-preserving mechanisms like deterministic crowding, fitness sharing, and others with a plain algorithm without diversification. We show that diversification is necessary for global exploration, but not all mechanisms succeed in finding both optima efficiently. Our theoretical results are accompanied by additional experiments for different population sizes.


Subject(s)
Algorithms , Computing Methodologies
SELECTION OF CITATIONS
SEARCH DETAIL
...