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1.
bioRxiv ; 2024 Jul 07.
Article in English | MEDLINE | ID: mdl-39005402

ABSTRACT

Proper regulation of organelle dynamics and inter-organelle contacts is critical for cellular health and function. Both the endoplasmic reticulum (ER) and actin cytoskeleton are known to regulate organelle dynamics, but how, when, and where these two subcellular components are coordinated to control organelle dynamics remains unclear. Here, we show that ER-associated actin consistently marks mitochondrial, endosomal, and lysosomal fission sites. We also show that actin polymerization by the ER-anchored isoform of the formin protein INF2 is a key regulator of the morphology and mobility of these organelles. Together, our findings establish a mechanism by which INF2-mediated polymerization of ER-associated actin at ER-organelle contacts regulates organelle dynamics.

2.
Neuron ; 112(1): 56-72.e4, 2024 Jan 03.
Article in English | MEDLINE | ID: mdl-37909037

ABSTRACT

A comprehensive understanding of neuronal diversity and connectivity is essential for understanding the anatomical and cellular mechanisms that underlie functional contributions. With the advent of single-cell analysis, growing information regarding molecular profiles leads to the identification of more heterogeneous cell types. Therefore, the need for additional orthogonal recombinase systems is increasingly apparent, as heterogeneous tissues can be further partitioned into increasing numbers of specific cell types defined by multiple features. Critically, new recombinase systems should work together with pre-existing systems without cross-reactivity in vivo. Here, we introduce novel site-specific recombinase systems based on ΦC31 bacteriophage recombinase for labeling multiple cell types simultaneously and a novel viral strategy for versatile and robust intersectional expression of any transgene. Together, our system will help researchers specifically target different cell types with multiple features in the same animal.


Subject(s)
Integrases , Recombinases , Animals , Recombinases/genetics , Integrases/genetics , Genetic Vectors , Neurons/metabolism , Transgenes
3.
Mol Ther Methods Clin Dev ; 26: 355-370, 2022 Sep 08.
Article in English | MEDLINE | ID: mdl-36034774

ABSTRACT

The transduction of acoustic information by hair cells depends upon mechanosensitive stereociliary bundles that project from their apical surface. Mutations or absence of the stereociliary protein EPS8 cause deafness in humans and mice, respectively. Eps8 knockout mice (Eps8 -/- ) have hair cells with immature stereocilia and fail to become sensory receptors. Here, we show that exogenous delivery of Eps8 using Anc80L65 in P1-P2 Eps8 -/- mice in vivo rescued the hair bundle structure of apical-coil hair cells. Rescued hair bundles correctly localize EPS8, WHIRLIN, MYO15, and BAIAP2L2, and generate normal mechanoelectrical transducer currents. Inner hair cells with normal-looking stereocilia re-expressed adult-like basolateral ion channels (BK and KCNQ4) and have normal exocytosis. The number of hair cells undergoing full recovery was not sufficient to rescue hearing in Eps8 -/- mice. Adeno-associated virus (AAV)-transduction of P3 apical-coil and P1-P2 basal-coil hair cells does not rescue hair cells, nor does Anc80L65-Eps8 delivery in adult Eps8 -/- mice. We propose that AAV-induced gene-base therapy is an efficient strategy to recover the complex hair-cell defects in Eps8 -/- mice. However, this therapeutic approach may need to be performed in utero since, at postnatal ages, Eps8 -/- hair cells appear to have matured or accumulated damage beyond the point of repair.

4.
Nat Methods ; 17(9): 917-921, 2020 09.
Article in English | MEDLINE | ID: mdl-32778832

ABSTRACT

The actin cytoskeleton plays multiple critical roles in cells, from cell migration to organelle dynamics. The small and transient actin structures regulating organelle dynamics are challenging to detect with fluorescence microscopy, making it difficult to determine whether actin filaments are directly associated with specific membranes. To address these limitations, we developed fluorescent-protein-tagged actin nanobodies, termed 'actin chromobodies' (ACs), targeted to organelle membranes to enable high-resolution imaging of sub-organellar actin dynamics.


Subject(s)
Actin Cytoskeleton/physiology , Optical Imaging/methods , Cell Line , Cytoskeleton , Fluorescence Recovery After Photobleaching , Fluorescent Antibody Technique , Humans , Luminescent Proteins , Red Fluorescent Protein
5.
PLoS Biol ; 12(8): e1001918, 2014 Aug.
Article in English | MEDLINE | ID: mdl-25093680

ABSTRACT

The p75 neurotrophin receptor, a member of the tumor necrosis factor receptor superfamily, is required as a co-receptor for the Nogo receptor (NgR) to mediate the activity of myelin-associated inhibitors such as Nogo, MAG, and OMgp. p45/NRH2/PLAIDD is a p75 homologue and contains a death domain (DD). Here we report that p45 markedly interferes with the function of p75 as a co-receptor for NgR. P45 forms heterodimers with p75 and thereby blocks RhoA activation and inhibition of neurite outgrowth induced by myelin-associated inhibitors. p45 binds p75 through both its transmembrane (TM) domain and DD. To understand the underlying mechanisms, we have determined the three-dimensional NMR solution structure of the intracellular domain of p45 and characterized its interaction with p75. We have identified the residues involved in such interaction by NMR and co-immunoprecipitation. The DD of p45 binds the DD of p75 by electrostatic interactions. In addition, previous reports suggested that Cys257 in the p75 TM domain is required for signaling. We found that the interaction of the cysteine 58 of p45 with the cysteine 257 of p75 within the TM domain is necessary for p45-p75 heterodimerization. These results suggest a mechanism involving both the TM domain and the DD of p45 to regulate p75-mediated signaling.


Subject(s)
Protein Multimerization , Receptor, Nerve Growth Factor/chemistry , Receptor, Nerve Growth Factor/metabolism , Receptors, Nerve Growth Factor/chemistry , Receptors, Nerve Growth Factor/metabolism , Signal Transduction , Amino Acid Sequence , Animals , Cysteine/metabolism , HEK293 Cells , Humans , Magnetic Resonance Spectroscopy , Mice , Models, Biological , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Interaction Mapping , Protein Stability , Receptors, Cell Surface/metabolism , Sciatic Nerve/injuries , Sciatic Nerve/metabolism , Solutions , Structure-Activity Relationship , Up-Regulation
6.
PLoS One ; 8(7): e69286, 2013.
Article in English | MEDLINE | ID: mdl-23935974

ABSTRACT

Fas-associated death domain (DD) adaptor (FADD), a member of the DD superfamily, contains both a DD and a death effector domain (DED) that are important in mediating FAS ligand-induced apoptotic signaling. P45 is a unique member of the DD superfamily in that it has a domain with sequence and structural characteristics of both DD and DED. We show that p45 forms a complex with FADD and diminishes Fas-FADD mediated death signaling. The DED of FADD is required for the complex formation with p45. Following spinal cord injury, transgenic mice over-expressing p45 exhibit increased neuronal survival, decreased retraction of corticospinal tract fibers and improved functional recovery. Understanding p45-mediated cellular and molecular mechanisms may provide insights into facilitating nerve regeneration in humans.


Subject(s)
Fas-Associated Death Domain Protein/metabolism , Membrane Glycoproteins/metabolism , Neurons/metabolism , Neurons/pathology , Receptors, Death Domain/metabolism , Spinal Cord Injuries/metabolism , Spinal Cord Injuries/pathology , Animals , Caspase 3/metabolism , Caspase 8/metabolism , Cell Death , Cell Survival , Enzyme Activation , Fas Ligand Protein/metabolism , Fas-Associated Death Domain Protein/chemistry , Female , HEK293 Cells , Humans , Immunohistochemistry , In Situ Nick-End Labeling , Mice , Mice, Transgenic , Protein Structure, Tertiary , Signal Transduction , Thy-1 Antigens/metabolism
7.
Neuron ; 59(5): 746-58, 2008 Sep 11.
Article in English | MEDLINE | ID: mdl-18786358

ABSTRACT

Reverse signaling by ephrin-As upon binding EphAs controls axon guidance and mapping. Ephrin-As are GPI-anchored to the membrane, requiring that they complex with transmembrane proteins that transduce their signals. We show that the p75 neurotrophin receptor (NTR) serves this role in retinal axons. p75(NTR) and ephrin-A colocalize within caveolae along retinal axons and form a complex required for Fyn phosphorylation upon binding EphAs, activating a signaling pathway leading to cytoskeletal changes. In vitro, retinal axon repulsion to EphAs by ephrin-A reverse signaling requires p75(NTR), but repulsion to ephrin-As by EphA forward signaling does not. Constitutive and retina-specific p75(NTR) knockout mice have aberrant anterior shifts in retinal axon terminations in superior colliculus, consistent with diminished repellent activity mediated by graded ephrin-A reverse signaling induced by graded collicular EphAs. We conclude that p75(NTR) is a signaling partner for ephrin-As and the ephrin-A- p75(NTR) complex reverse signals to mediate axon repulsion required for guidance and mapping.


Subject(s)
Axons/physiology , Brain Mapping , Ephrins/metabolism , Retinal Ganglion Cells/cytology , Signal Transduction/physiology , Amino Acids/metabolism , Animals , Animals, Newborn , Cell Line, Transformed , GAP-43 Protein/genetics , GAP-43 Protein/metabolism , Gene Expression Regulation/physiology , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Humans , Mice , Mice, Transgenic , Mutation , Nerve Tissue Proteins , Proto-Oncogene Proteins c-fyn/metabolism , Rats , Receptors, Nerve Growth Factor , Retina/cytology , Retinal Ganglion Cells/physiology , Visual Pathways/physiology
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