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1.
Zoolog Sci ; 40(4): 326-340, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37522604

ABSTRACT

The scleractinian coral genus Cyphastrea is widely distributed in the Indo-Pacific region and is common from the subtropical to the warm-temperate regions in Japan. Three new species in this genus have recently been reported from south-eastern Australia or the Red Sea. However, taxonomic and species diversity have been little studied so far in Japan. In this study, we analyzed 112 specimens of Cyphastrea collected from the subtropical to the warm-temperate regions in Japan to clarify the species diversity in the country. This analysis was based on skeletal morphological and molecular analyses using three genetic markers of the nuclear 28S rDNA, histone H3 gene, and the mitochondrial noncoding intergenic region between COI and tRNAmet. The molecular phylogenetic trees showed that our specimens are separated mainly into four clades. Considering the morphological data with the molecular phylogenetic relationships, we confirmed a total of nine species, including two species, C. magna and C. salae, recorded for the first time in Japan. Although eight out of nine species were genetically included within Cyphastrea, one species, C. agassizi, was genetically distant from all other species and was closely related to the genus Leptastrea, suggesting the return of this species to the genus to which it was originally ascribed. Two newly recorded species were reciprocally monophyletic, while the other six species (excluding C. agassizi) clustered in two clades without forming species-specific lineages, including three polyphyletic species. Thus, the species boundary between species in Cyphastrea remains unclear in most species using these three sequenced loci.


Subject(s)
Anthozoa , Animals , Phylogeny , Anthozoa/genetics , Japan , DNA, Ribosomal/genetics , Mitochondria/genetics , Sequence Analysis, DNA
2.
Commun Biol ; 5(1): 824, 2022 08 16.
Article in English | MEDLINE | ID: mdl-35974093

ABSTRACT

In mammals, both professional phagocytes and nonprofessional phagocytes (NPPs) can perform phagocytosis. However, limited targets are phagocytosed by NPPs, and thus, the mechanism remains unclear. We find that spores of the yeast Saccharomyces cerevisiae are internalized efficiently by NPPs. Analyses of this phenomenon reveals that RNA fragments derived from cytosolic RNA species are attached to the spore wall, and these fragments serve as ligands to induce spore internalization. Furthermore, we show that a multiligand receptor, RAGE (receptor for advanced glycation end-products), mediates phagocytosis in NPPs. RAGE-mediated phagocytosis is not uniquely induced by spores but is an intrinsic mechanism by which NPPs internalize macromolecules containing RAGE ligands. In fact, artificial particles labeled with polynucleotides, HMGB1, or histone (but not bovine serum albumin) are internalized in NPPs. Our findings provide insight into the molecular basis of phagocytosis by NPPs, a process by which a variety of macromolecules are targeted for internalization.


Subject(s)
Phagocytes , Receptors, Immunologic , Animals , Ligands , Mammals , Phagocytosis , RNA , Receptor for Advanced Glycation End Products
3.
PLoS Genet ; 17(8): e1009727, 2021 08.
Article in English | MEDLINE | ID: mdl-34407079

ABSTRACT

Vps13 family proteins are proposed to function in bulk lipid transfer between membranes, but little is known about their regulation. During sporulation of Saccharomyces cerevisiae, Vps13 localizes to the prospore membrane (PSM) via the Spo71-Spo73 adaptor complex. We previously reported that loss of any of these proteins causes PSM extension and subsequent sporulation defects, yet their precise function remains unclear. Here, we performed a genetic screen and identified genes coding for a fragment of phosphatidylinositol (PI) 4-kinase catalytic subunit and PI 4-kinase noncatalytic subunit as multicopy suppressors of spo73Δ. Further genetic and cytological analyses revealed that lowering PI4P levels in the PSM rescues the spo73Δ defects. Furthermore, overexpression of VPS13 and lowering PI4P levels synergistically rescued the defect of a spo71Δ spo73Δ double mutant, suggesting that PI4P might regulate Vps13 function. In addition, we show that an N-terminal fragment of Vps13 has affinity for the endoplasmic reticulum (ER), and ER-plasma membrane (PM) tethers localize along the PSM in a manner dependent on Vps13 and the adaptor complex. These observations suggest that Vps13 and the adaptor complex recruit ER-PM tethers to ER-PSM contact sites. Our analysis revealed that involvement of a phosphoinositide, PI4P, in regulation of Vps13, and also suggest that distinct contact site proteins function cooperatively to promote de novo membrane formation.


Subject(s)
1-Phosphatidylinositol 4-Kinase/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Spores, Fungal/genetics , 1-Phosphatidylinositol 4-Kinase/genetics , Adaptor Proteins, Signal Transducing/metabolism , Carrier Proteins/genetics , Cell Membrane/metabolism , Endoplasmic Reticulum/metabolism , Membranes/metabolism , Mitochondrial Membranes/metabolism , Protein Transport , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics
4.
J Gen Appl Microbiol ; 67(1): 33-41, 2021 Apr 16.
Article in English | MEDLINE | ID: mdl-33229814

ABSTRACT

O-GlcNAc modification mediated by O-GlcNAc transferase (OGT) is a reversible protein modification in which O-GlcNAc moieties are attached to target proteins in the cytosol, nucleus, and mitochondria. O-GlcNAc moieties attached to proteins can be removed by O-GlcNAcase (OGA). The addition of an O-GlcNAc moiety can influence several aspects of protein function, and aberrant O-GlcNAc modification is linked to a number of diseases. While OGT and OGA are conserved across eukaryotic cells, yeasts lack these enzymes. Previously, we reported that protein O-GlcNAc modification occurred in the budding yeast Saccharomyces cerevisiae when OGT was ectopically expressed. Because yeast cells lack OGA, O-GlcNAc moieties are stably attached to target proteins. Thus, the yeast system may be useful for finding novel OST substrates. By proteomic analysis, we identified 468 O-GlcNAcylated proteins in yeast cells expressing human OGT. Among these proteins, 13 have human orthologues that show more than 30% identity to their corresponding yeast orthologue, and possible glycosylation residues are conserved in these human orthologues. In addition, the orthologues have not been reported as substrates of OGT. We verified that some of these human orthologues are O-GlcNAcylated in cultured human cells. These proteins include an ubiquitin-conjugating enzyme, UBE2D1, and an eRF3-similar protein, HBS1L. Thus, the yeast system would be useful to find previously unknown O-GlcNAcylated proteins and regulatory mechanisms.


Subject(s)
N-Acetylglucosaminyltransferases/genetics , N-Acetylglucosaminyltransferases/isolation & purification , N-Acetylglucosaminyltransferases/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Gene Expression Regulation, Fungal , Glycosylation , HEK293 Cells , Humans , Protein Processing, Post-Translational , Proteomics
5.
Nucleic Acids Res ; 47(19): 10357-10372, 2019 11 04.
Article in English | MEDLINE | ID: mdl-31504794

ABSTRACT

Activation of ribosomal RNA (rRNA) synthesis is pivotal during cell growth and proliferation, but its aberrant upregulation may promote tumorigenesis. Here, we demonstrate that the candidate oncoprotein, LYAR, enhances ribosomal DNA (rDNA) transcription. Our data reveal that LYAR binds the histone-associated protein BRD2 without involvement of acetyl-lysine-binding bromodomains and recruits BRD2 to the rDNA promoter and transcribed regions via association with upstream binding factor. We show that BRD2 is required for the recruitment of the MYST-type acetyltransferase KAT7 to rDNA loci, resulting in enhanced local acetylation of histone H4. In addition, LYAR binds a complex of BRD4 and KAT7, which is then recruited to rDNA independently of the BRD2-KAT7 complex to accelerate the local acetylation of both H4 and H3. BRD2 also helps recruit BRD4 to rDNA. By contrast, LYAR has no effect on rDNA methylation or the binding of RNA polymerase I subunits to rDNA. These data suggest that LYAR promotes the association of the BRD2-KAT7 and BRD4-KAT7 complexes with transcription-competent rDNA loci but not to transcriptionally silent rDNA loci, thereby increasing rRNA synthesis by altering the local acetylation status of histone H3 and H4.


Subject(s)
Cell Cycle Proteins/genetics , DNA-Binding Proteins/genetics , Histone Acetyltransferases/genetics , Nuclear Proteins/genetics , Transcription Factors/genetics , Acetylation , Carcinogenesis/genetics , Chromatin/genetics , DNA Methylation/genetics , DNA, Ribosomal/genetics , Histones/genetics , Humans , RNA Polymerase I/genetics , RNA, Ribosomal/biosynthesis , RNA, Ribosomal/genetics , Transcription, Genetic
6.
FEMS Yeast Res ; 18(1)2018 02 01.
Article in English | MEDLINE | ID: mdl-29293994

ABSTRACT

Sec2 activates Sec4 Rab GTPase as a guanine nucleotide exchange factor for the recruitment of downstream effectors to facilitate tethering and fusion of post-Golgi vesicles at the plasma membrane. During the meiosis and sporulation of budding yeast, post-Golgi vesicles are transported to and fused at the spindle pole body (SPB) to form a de novo membrane, called the prospore membrane. Previous studies have revealed the role of the SPB outer surface called the meiotic outer plaque (MOP) in docking and fusion of post-Golgi vesicles. However, the upstream molecular machinery for post-Golgi vesicular fusion that facilitates prospore membrane formation remains enigmatic. Here, we demonstrate that the GTP exchange factor for Sec4, Sec2, participates in the formation of the prospore membrane. A conditional mutant in which the SEC2 expression is shut off during sporulation showed sporulation defects. Inactivation of Sec2 caused Sec4 targeting defects along the prospore membranes, thereby causing insufficient targeting of downstream effectors and cargo proteins to the prospore membrane. These results suggest that the activation of Sec4 by Sec2 is required for the efficient supply of post-Golgi vesicles to the prospore membrane and thus for prospore membrane formation/extension and subsequent deposition of spore wall materials.


Subject(s)
Cell Membrane/metabolism , Guanine Nucleotide Exchange Factors/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/physiology , rab GTP-Binding Proteins/metabolism , Biomarkers , Fluorescent Antibody Technique , Gene Expression Regulation, Fungal , Guanine Nucleotide Exchange Factors/chemistry , Guanine Nucleotide Exchange Factors/genetics , Mutation , Phenotype , Protein Domains , Protein Transport , Saccharomyces cerevisiae/ultrastructure , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/genetics , Spores , rab GTP-Binding Proteins/genetics
7.
J Biochem ; 163(4): 293-304, 2018 Apr 01.
Article in English | MEDLINE | ID: mdl-29211891

ABSTRACT

OSW2 is a meiotically-induced gene required for spore wall formation. osw2Δ spores are sensitive to ether treatment. Except for this phenotype, the mutants do not show obvious sporulation defects; thus, its function remains elusive. We found that deletion of both OSW2 and CHS3 results in a synthetic sporulation defect. The spore wall is composed of four layers, and chs3Δ spores lack the outer two (chitosan and dityrosine) layers. Thus, Osw2 is involved in the assembly of the inner (glucan and mannan) layers. In agreement with this notion, a glycosylphosphatidylinositol-anchored protein reporter mislocalizes in osw2Δ spores. The osw2Δ mutation also exhibited a severe synthetic sporulation defect when combined with the deletion of a ß-1,6-glucan synthesis-related gene, BIG1. Osw2 is localized to the prospore membrane during sporulation. However, it disappears in mature spores, indicating that it is not a structural component of the spore wall. Given that Osw2 contains a probable 2-dehydropantoate 2-reductase domain, it may mediate an enzymatic reaction. Osw2 shows a weak similarity to other 2-dehydropantoate 2-reductase domain-containing proteins, Svl3 and Pam1. A pam1Δsvl3Δ mutant exhibits vegetative cell and spore wall defects. Thus, the 2-dehydropantoate 2-reductase domain-containing proteins may have a similar function in glucan and/or mannan layer assembly.


Subject(s)
Alcohol Oxidoreductases/metabolism , Cell Wall/metabolism , Glucans/metabolism , Mannans/metabolism , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae/cytology
8.
Mol Biol Cell ; 28(26): 3881-3895, 2017 Dec 15.
Article in English | MEDLINE | ID: mdl-29046399

ABSTRACT

During the developmental process of sporulation in Saccharomyces cerevisiae, membrane structures called prospore membranes are formed de novo, expand, extend, acquire a round shape, and finally become plasma membranes of the spores. GIP1 encodes a regulatory/targeting subunit of protein phosphatase type 1 that is required for sporulation. Gip1 recruits the catalytic subunit Glc7 to septin structures that form along the prospore membrane; however, the molecular basis of its localization and function is not fully understood. Here we show that Gip1 changes its localization dynamically and is required for prospore membrane extension. Gip1 first associates with the spindle pole body as the prospore membrane forms, moves onto the prospore membrane and then to the septins as the membrane extends, distributes around the prospore membrane after closure, and finally translocates into the nucleus in the maturing spore. Deletion and mutation analyses reveal distinct sequences in Gip1 that are required for different localizations and for association with Glc7. Binding to Glc7 is also required for proper localization. Strikingly, localization to the prospore membrane, but not association with septins, is important for Gip1 function. Further, our genetic analysis suggests that a Gip1-Glc7 phosphatase complex regulates prospore membrane extension in parallel to the previously reported Vps13, Spo71, Spo73 pathway.


Subject(s)
Protein Phosphatase 1/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Cell Cycle Proteins/metabolism , Cell Membrane/metabolism , Meiosis , Membrane Transport Proteins/metabolism , Protein Binding , Protein Transport , Proteolysis , Saccharomyces cerevisiae/metabolism , Septins/metabolism , Spindle Pole Bodies , Spores, Fungal/metabolism
9.
Yeast ; 34(11): 431-446, 2017 11.
Article in English | MEDLINE | ID: mdl-28732129

ABSTRACT

The yeast spore wall is an excellent model to study the assembly of an extracellular macromolecule structure. In the present study, mutants defective in ß-1,6-glucan synthesis, including kre1∆, kre6∆, kre9∆ and big1∆, were sporulated to analyse the effect of ß-1,6-glucan defects on the spore wall. Except for kre6∆, these mutant spores were sensitive to treatment with ether, suggesting that the mutations perturb the integrity of the spore wall. Morphologically, the mutant spores were indistinguishable from wild-type spores. They lacked significant sporulation defects partly because the chitosan layer, which covers the glucan layer, compensated for the damage. The proof for this model was obtained from the effect of the additional deletion of CHS3 that resulted in the absence of the chitosan layer. Among the double mutants, the most severe spore wall deficiency was observed in big1∆ spores. The majority of the big1∆chs3∆ mutants failed to form visible spores at a higher temperature. Given that the big1∆ mutation caused a failure to attach a GPI-anchored reporter, Cwp2-GFP, to the spore wall, ß-1,6-glucan is involved in tethering of GPI-anchored proteins in the spore wall as well as in the vegetative cell wall. Thus, ß-1,6-glucan is required for proper organization of the spore wall. Copyright © 2017 John Wiley & Sons, Ltd.


Subject(s)
Cell Wall/genetics , Saccharomyces cerevisiae Proteins/physiology , Saccharomyces cerevisiae/genetics , beta-Glucans/metabolism , Cell Wall/metabolism , Chitin Synthase/genetics , Chitin Synthase/metabolism , Chitin Synthase/physiology , Glycoproteins/genetics , Glycoproteins/metabolism , Glycoproteins/physiology , Membrane Glycoproteins/genetics , Membrane Glycoproteins/metabolism , Membrane Glycoproteins/physiology , Membrane Proteins/genetics , Membrane Proteins/metabolism , Membrane Proteins/physiology , Mutation , Saccharomyces cerevisiae/physiology , Saccharomyces cerevisiae/ultrastructure , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Spores, Fungal/metabolism , Spores, Fungal/ultrastructure
10.
Cytotechnology ; 69(3): 417-434, 2017 Jun.
Article in English | MEDLINE | ID: mdl-26608959

ABSTRACT

All asparagine-linked glycans (N-glycans) on the eukaryotic glycoproteins are primarily derived from dolichol-linked oligosaccharides (DLO), synthesized on the rough endoplasmic reticulum membrane. We have previously reported cloning and identification of the human gene, HMT-1, which encodes chitobiosyldiphosphodolichol beta-mannosyltransferase (ß1,4-MT) involved in the early assembly of DLO. Considering that N-glycosylation is one of the most ubiquitous post-translational modifications for many eukaryotic proteins, the HMT-1 could be postulated as one of the housekeeping genes, but its transcriptional regulation remains to be investigated. Here we screened a 1 kb region upstream from HMT-1 open reading frame (ORF) for transcriptionally regulatory sequences by using chloramphenicol acetyl transferase (CAT) assay, and found that the region from -33 to -1 positions might act in HMT-1 transcription at basal level and that the region from -200 to -42 should regulate its transcription either positively or negatively. In addition, results with CAT assays suggested the possibility that two GATA-1 motifs and an Sp1 motif within a 200 bp region upstream from HMT-1 ORF might significantly upregulate HMT-1 transcription. On the contrary, the observations obtained from site-directed mutational analyses revealed that an NF-1/AP-2 overlapping motif located at -148 to -134 positions should serve as a strong silencer. The control of the HMT-1 transcription by these motifs resided within the 200 bp region could partially explain the variation of expression level among various human tissues, suggesting availability and importance of this region for regulatory role in HMT-1 expression.

11.
mSphere ; 1(1)2016.
Article in English | MEDLINE | ID: mdl-27303688

ABSTRACT

Sporulation of Saccharomyces cerevisiae is a developmental process in which an ascus containing four haploid spores forms from a diploid cell. During this process, newly formed membrane structures called prospore membranes extend along the nuclear envelope and engulf and package daughter nuclei along with cytosol and organelles to form precursors of spores. Proteins involved in prospore membrane extension, Vps13 and Spo71, have recently been reported; however, the overall mechanism of membrane extension remains unclear. Here, we identified Spo73 as an additional factor involved in prospore membrane extension. Analysis of a spo73∆ mutant revealed that it shows defects similar to those of a spo71∆ mutant during prospore membrane formation. Spo73 localizes to the prospore membrane, and this localization is independent of Spo71 and Vps13. In contrast, a Spo73 protein carrying mutations in a surface basic patch mislocalizes to the cytoplasm and overexpression of Spo71 can partially rescue localization to the prospore membrane. Similar to spo71∆ mutants, spo73∆ mutants display genetic interactions with the mutations in the SMA2 and SPO1 genes involved in prospore membrane bending. Further, our bioinformatic analysis revealed that Spo73 is a dysferlin domain-only protein. Thus, these results suggest that a dysferlin domain-only protein, Spo73, functions with a dual pleckstrin homology domain protein, Spo71, in prospore membrane extension. Analysis of Spo73 will provide insights into the conserved function of dysferlin domains, which is related to dysferlinopathy. IMPORTANCE Prospore membrane formation consists of de novo double-membrane formation, which occurs during the developmental process of sporulation in Saccharomyces cerevisiae. Membranes are formed into their proper size and shape, and thus, prospore membrane formation has been studied as a general model of membrane formation. We identified SPO73, previously shown to be required for spore wall formation, as an additional gene involved in prospore membrane extension. Genetic and cell biological analyses suggested that Spo73 functions on the prospore membrane with other factors in prospore membrane extension, counteracting the bending force of the prospore membrane. Spo73 is the first dysferlin domain-only protein ever analyzed. The dysferlin domain is conserved from yeast to mammals and is found in dysferlin proteins, which are involved in dysferlinopathy, although the precise function of the domain is unknown. Continued analysis of Spo73 will contribute to our understanding of the function of dysferlin domains and dysferlinopathy.

12.
J Biochem ; 158(6): 467-76, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26126931

ABSTRACT

Human lactate dehydrogenase (LDH) has attracted attention as a potential target for cancer therapy and contraception. In this study, we reconstituted human lactic acid fermentation in Saccharomyces cerevisiae, with the goal of constructing a yeast cell-based LDH assay system. pdc null mutant yeast (mutated in the endogenous pyruvate decarboxylase genes) are unable to perform alcoholic fermentation; when grown in the presence of an electron transport chain inhibitor, pdc null strains exhibit a growth defect. We found that introduction of the human gene encoding LDHA complemented the pdc growth defect; this complementation depended on LDHA catalytic activity. Similarly, introduction of the human LDHC complemented the pdc growth defect, even though LDHC did not generate lactate at the levels seen with LDHA. In contrast, the human LDHB did not complement the yeast pdc null mutant, although LDHB did generate lactate in yeast cells. Expression of LDHB as a red fluorescent protein (RFP) fusion yielded blebs in yeast, whereas LDHA-RFP and LDHC-RFP fusion proteins exhibited cytosolic distribution. Thus, LDHB exhibits several unique features when expressed in yeast cells. Because yeast cells are amenable to genetic analysis and cell-based high-throughput screening, our pdc/LDH strains are expected to be of use for versatile analyses of human LDH.


Subject(s)
Enzyme Assays , L-Lactate Dehydrogenase/chemistry , Saccharomyces cerevisiae/enzymology , Biocatalysis , Fermentation , Genetic Complementation Test , High-Throughput Screening Assays , Humans , Isoenzymes/chemistry , Isoenzymes/genetics , L-Lactate Dehydrogenase/genetics , Lactate Dehydrogenase 5 , Lactic Acid/metabolism , Luminescent Proteins , Pyruvic Acid/metabolism , Saccharomyces cerevisiae/genetics , Red Fluorescent Protein
13.
Zootaxa ; 3918(1): 141-50, 2015 Jan 10.
Article in English | MEDLINE | ID: mdl-25781086

ABSTRACT

Four species of palicoid crabs, Neopalicus jukesii (White, 1847) and Rectopalicus ampullatus Castro, 2000 of the family Palicidae, and Crossotonotus spinipes (De Man, 1888) and a new species of Pleurophricus A. Milne-Edwards, 1873 of the family Crossotonotidae, are recorded from the Ogasawara Islands, Japan. Diagnostics for the new species are the protruded bilobed front, six subacute lobate teeth at each lateral margin of the carapace, six rounded lobes at the posterior margin of the carapace, a crested armature of the cheliped carpus, and the strongly depressed ambulatory legs, which readily distinguish it from its two congeners, P. cristatipes A. Milne-Edwards, 1873 known by two males from Australia and the Kai Islands in Indonesia, and P. longirostris (Moosa & Serène, 1981) known by a female from the Sunda Strait, Indonesia.


Subject(s)
Brachyura/classification , Animal Distribution , Animal Shells/anatomy & histology , Animal Shells/growth & development , Animal Structures/anatomy & histology , Animal Structures/growth & development , Animals , Body Size , Brachyura/anatomy & histology , Brachyura/growth & development , Ecosystem , Female , Islands , Japan , Male , Organ Size
14.
Appl Environ Microbiol ; 80(16): 5098-105, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24907339

ABSTRACT

In this study, we present a nonhazardous biological method of producing chitosan beads using the budding yeast Saccharomyces cerevisiae. Yeast cells cultured under conditions of nutritional starvation cease vegetative growth and instead form spores. The spore wall has a multilaminar structure with the chitosan layer as the second outermost layer. Thus, removal of the outermost dityrosine layer by disruption of the DIT1 gene, which is required for dityrosine synthesis, leads to exposure of the chitosan layer at the spore surface. In this way, spores can be made to resemble chitosan beads. Chitosan has adsorptive features and can be used to remove heavy metals and negatively charged molecules from solution. Consistent with this practical application, we find that spores are capable of adsorbing heavy metals such as Cu(2+), Cr(3+), and Cd(2+), and removal of the dityrosine layer further improves the adsorption. Removal of the chitosan layer decreases the adsorption, indicating that chitosan works as an adsorbent in the spores. Besides heavy metals, spores can also adsorb a negatively charged cholesterol derivative, taurocholic acid. Furthermore, chitosan is amenable to chemical modifications, and, consistent with this property, dit1Δ spores can serve as a carrier for immobilization of enzymes. Given that yeast spores are a natural product, our results demonstrate that they, and especially dit1Δ mutants, can be used as chitosan beads and used for multiple purposes.


Subject(s)
Chitosan/metabolism , Saccharomyces cerevisiae/growth & development , Spores, Fungal/metabolism , Adsorption , Cell Wall/chemistry , Cell Wall/metabolism , Chitosan/chemistry , Hydroxymethyl and Formyl Transferases/genetics , Hydroxymethyl and Formyl Transferases/metabolism , Metals, Heavy/chemistry , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Spores, Fungal/chemistry , Spores, Fungal/genetics , Spores, Fungal/growth & development
15.
Appl Environ Microbiol ; 80(15): 4502-10, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24837390

ABSTRACT

Here, we report a novel method to produce microencapsulated enzymes using Saccharomyces cerevisiae spores. In sporulating cells, soluble secreted proteins are transported to the spore wall. Previous work has shown that the spore wall is capable of retaining soluble proteins because its outer layers work as a diffusion barrier. Accordingly, a red fluorescent protein (RFP) fusion of the α-galactosidase, Mel1, expressed in spores was observed in the spore wall even after spores were subjected to a high-salt wash in the presence of detergent. In vegetative cells, however, the cell wall cannot retain the RFP fusion. Although the spore wall prevents diffusion of proteins, it is likely that smaller molecules, such as sugars, pass through it. In fact, spores can contain much higher α-galactosidase activity to digest melibiose than vegetative cells. When present in the spore wall, the enzyme acquires resistance to environmental stresses including enzymatic digestion and high temperatures. The outer layers of the spore wall are required to retain enzymes but also decrease accessibility of the substrates. However, mutants with mild spore wall defects can retain and stabilize the enzyme while still permitting access to the substrate. In addition to Mel1, we also show that spores can retain the invertase. Interestingly the encapsulated invertase has significantly lower activity toward raffinose than toward sucrose.This suggests that substrate selectivity could be altered by the encapsulation.


Subject(s)
Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Spores, Fungal/enzymology , alpha-Galactosidase/metabolism , Biotechnology , Cell Wall/enzymology , Cell Wall/genetics , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Protein Transport , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Spores, Fungal/genetics , alpha-Galactosidase/genetics , Red Fluorescent Protein
16.
Eukaryot Cell ; 12(11): 1530-7, 2013 Nov.
Article in English | MEDLINE | ID: mdl-24036347

ABSTRACT

The creation of haploid gametes in yeast, termed spores, requires the de novo formation of membranes within the cytoplasm. These membranes, called prospore membranes, enclose the daughter nuclei generated by meiosis. Proper growth and closure of prospore membranes require the highly conserved Vps13 protein. Mutation of SPO71, a meiosis-specific gene first identified as defective in spore formation, was found to display defects in membrane morphogenesis very similar to those seen in vps13Δ cells. Specifically, prospore membranes are smaller than in the wild type, they fail to close, and membrane vesicles are present within the prospore membrane lumen. As in vps13Δ cells, the levels of phophatidylinositol-4-phosphate are reduced in the prospore membranes of spo71Δ cells. SPO71 is required for the translocation of Vps13 from the endosome to the prospore membrane, and ectopic expression of SPO71 in vegetative cells results in mislocalization of Vps13. Finally, the two proteins can be coprecipitated from sporulating cells. We propose that Spo71 is a sporulation-specific partner for Vps13 and that they act in concert to regulate prospore membrane morphogenesis.


Subject(s)
Carrier Proteins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Spores, Fungal/metabolism , Carrier Proteins/genetics , Cell Membrane/metabolism , Endosomes/metabolism , Gene Deletion , Phosphatidylinositol Phosphates/metabolism , Protein Binding , Protein Transport , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/physiology , Saccharomyces cerevisiae Proteins/genetics
17.
Int J Cancer ; 132(9): 2107-17, 2013 May 01.
Article in English | MEDLINE | ID: mdl-23055136

ABSTRACT

This research aimed to validate the specificity of the newly developed nanobeacon for imaging the Thomsen-Friedenreich (TF) antigen, a potential biomarker of colorectal cancer. The imaging agent is comprised of a submicron-sized polystyrene nanosphere encapsulated with a Coumarin 6 dye. The surface of the nanosphere was modified with peanut agglutinin (PNA) and poly(N-vinylacetamide (PNVA) moieties. The former binds to Gal-ß(1-3)GalNAc with high affinity while the latter enhances the specificity of PNA for the carbohydrates. The specificity of the nanobeacon was evaluated in human colorectal cancer cells and specimens, and the data were compared with immunohistochemical staining and flow cytometric analysis. Additionally, distribution of the nanobeacon in vivo was assessed using an "intestinal loop" mouse model. Quantitative analysis of the data indicated that approximately 2 µg of PNA were detected for each milligram of the nanobeacon. The nanobeacon specifically reported colorectal tumors by recognizing the tumor-specific antigen through the surface-immobilized PNA. Removal of TF from human colorectal cancer cells and tissues resulted in a loss of fluorescence signal, which suggests the specificity of the probe. Most importantly, the probe was not absorbed systematically in the large intestine upon topical application. As a result, no registered toxicity was associated with the probe. These data demonstrate the potential use of this novel nanobeacon for imaging the TF antigen as a biomarker for the early detection and prediction of the progression of colorectal cancer at the molecular level.


Subject(s)
Antigens, Tumor-Associated, Carbohydrate/metabolism , Colorectal Neoplasms/diagnosis , Coumarins , Diagnostic Imaging/methods , Nanospheres , Peanut Agglutinin , Thiazoles , Animals , Antigens, Tumor-Associated, Carbohydrate/genetics , Blotting, Western , Case-Control Studies , Colon/metabolism , Colorectal Neoplasms/metabolism , Coumarins/pharmacokinetics , Fluorescent Dyes , Humans , Immunoenzyme Techniques , Male , Mice , Mice, Transgenic , Peanut Agglutinin/pharmacokinetics , Polystyrenes/chemistry , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Rectum/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Surface Properties , Thiazoles/pharmacokinetics , Tissue Distribution , Tumor Cells, Cultured
18.
Cytotechnology ; 65(6): 909-13, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23250635

ABSTRACT

The effect of natural IgG antibody recognizing ß-galactosyl epitope on hepatoma cell invasion was investigated. Anti-ß-galactosyl antibody dose-dependently suppressed hepatoma invasion underneath primarily cultured mesothelial cells monolayer without affecting the proliferation, to the same extent as natural IgG antibody with anti-α-galactosyl specificity, which had already been reported to have an anti-metastatic activity. The inhibitory effect of anti-ß-galactosyl antibody was completely canceled by adding lactose (galactose-ß-1, 4-glucose) to the medium, indicating that this antibody recognized some antigens with ß-galactosyl epitope. Hepatoma cells pretreated with this antibody for 48 h showed reduced invasive activity, while the pretreatment of mesothelial cells with the antibody did not affect hepatoma cells invasion. Anti-ß-galactosyl antibody also suppressed hepatoma cells adhesion to mesothelial cells monolayer. These results suggest that natural antibody with anti-ß-galactosyl specificity may recognize the ß-galactosyl epitope in some adhesion-related molecules on hepatoma cells, thus suppressing adhesion and invasion to mesothelial cells monolayer. These results suggest possible therapeutic uses of this antibody in the treatment of metastatic tumors.

19.
Mol Pharm ; 9(10): 2933-41, 2012 Oct 01.
Article in English | MEDLINE | ID: mdl-22953762

ABSTRACT

We evaluated the potential of poly(N-vinylacetamide-co-acrylic acid) modified with d-octaarginine, which is a typical cell-penetrating peptide, as a carrier for mucosal vaccine delivery. Mice were nasally inoculated four times every seventh day with PBS containing ovalbumin with or without the d-octaarginine-linked polymer. The polymer enhanced the production of ovalbumin-specific immunoglobulin G (IgG) and secreted immunoglobulin A (IgA) in the serum and the nasal cavity, respectively. Ovalbumin internalized into nasal epithelial cells appeared to stimulate IgA production. Ovalbumin transferred to systemic circulation possibly enhanced IgG production. An equivalent dose of the cholera toxin B subunit (CTB), which was used as a positive control, was superior to the polymer in enhancing antibody production; however, dose escalation of the polymer overcame this disadvantage. A similar immunization profile was also observed when ovalbumin was replaced with influenza virus HA vaccines. The polymer induced a vaccine-specific immune response identical to that induced by CTB, irrespective of the antibody type, when its dose was 10 times that of CTB. Our cell-penetrating peptide-linked polymer is a potential candidate for antigen carriers that induce humoral immunity on the mucosal surface and in systemic circulation when nasally coadministered with antigens.


Subject(s)
Cell-Penetrating Peptides/administration & dosage , Mucous Membrane/metabolism , Nasal Mucosa/metabolism , Polymers/administration & dosage , Vaccines/administration & dosage , Acetamides/administration & dosage , Acetamides/chemistry , Acetamides/immunology , Acrylates/administration & dosage , Acrylates/chemistry , Acrylates/immunology , Adjuvants, Immunologic/administration & dosage , Adjuvants, Immunologic/chemistry , Administration, Intranasal/methods , Animals , Antibody Formation/immunology , Antigens/administration & dosage , Antigens/chemistry , Antigens/immunology , Cell-Penetrating Peptides/chemistry , Cell-Penetrating Peptides/immunology , Cholera Toxin/immunology , Drug Carriers/administration & dosage , Drug Carriers/chemistry , Drug Delivery Systems/methods , Epithelial Cells/drug effects , Epithelial Cells/immunology , Epithelial Cells/metabolism , Female , Immunity, Humoral/immunology , Immunoglobulin A, Secretory/immunology , Immunoglobulin G/immunology , Influenza Vaccines/administration & dosage , Influenza Vaccines/chemistry , Influenza Vaccines/immunology , Mice , Mice, Inbred BALB C , Mucous Membrane/drug effects , Mucous Membrane/immunology , Nasal Mucosa/drug effects , Nasal Mucosa/immunology , Ovalbumin/immunology , Pharmaceutical Solutions/administration & dosage , Pharmaceutical Solutions/chemistry , Polymers/chemistry , Polyvinyls/administration & dosage , Polyvinyls/chemistry , Vaccination/methods , Vaccines/chemistry
20.
Mol Phylogenet Evol ; 65(1): 323-8, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22760028

ABSTRACT

Madrepora is one of the most ecologically important genera of reef-building scleractinians in the deep sea, occurring from tropical to high-latitude regions. Despite this, the taxonomic affinities and relationships within the genus Madrepora remain unclear. To clarify these issues, we sequenced the mitochondrial (mt) genome of the most widespread Madrepora species, M. oculata, and compared this with data for other scleractinians. The architecture of the M. oculata mt genome was very similar to that of other scleractinians, except for a novel gene rearrangement affecting only cox2 and cox3. This pattern of gene organization was common to four geographically distinct M. oculata individuals as well as the congeneric species M. minutiseptum, but was not shared by other genera that are closely related on the basis of cox1 sequence analysis nor other oculinids, suggesting that it might be unique to Madrepora.


Subject(s)
Anthozoa/classification , Gene Rearrangement , Genome, Mitochondrial , Phylogeny , Animals , Anthozoa/genetics , DNA, Mitochondrial/genetics , Molecular Sequence Data , Sequence Analysis, DNA
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