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1.
Anticancer Res ; 44(7): 2921-2931, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38925841

ABSTRACT

BACKGROUND/AIM: Human papillomavirus (HPV)-positive head and neck squamous cell carcinoma (HNSCC) is clinically and immunologically distinct from HPV-negative HNSCC. Herein, we investigated the presence of tumor antigens HPV E6/E7 and wild-type p53-specific T-cell responses, and the impact of immune checkpoint blockade in patients with HPV-positive HNSCC. MATERIALS AND METHODS: Peripheral blood mononuclear cells (PBMCs) from patients with HPV-positive HNSCC were stimulated with HPV E6/E7 or wild-type p53-derived peptide mixture and evaluated using the interferon-γ enzyme-linked immunosorbent spot assay. Flow cytometry was performed to analyze the proportion of T-cell subsets and T cells expressing immune checkpoint molecules. RESULTS: HPV E6/E7-specific T cells were detected in 22 (95.7%) of 23 patients, whereas wild-type p53-specific T cells were detected in 3 (15.0%) of 20 patients. Seven (43.8%) of 16 patients exhibited wild-type p53-specific T-cell responses, as determined using whole proteins instead of peptides. Immune checkpoint blockade enhanced wild-type p53-specific T-cell responses in 9 (45.0%) of 20 patients. Flow cytometric analysis of PBMCs revealed that responders exhibiting enhanced wild-type p53-specific T-cell responses following immune checkpoint blockade had a significantly higher proportion of Ki-67+CD4+ T cells, Ki-67+CD8+ T cells, regulatory T cells, PD-1+CD4+ T cells, and TIM-3+CD4+ T cells than non-responders. CONCLUSION: Our findings indicate that tumor antigen-specific T cells are present in the peripheral blood of patients with HPV-positive HNSCC. Blockade of checkpoint pathways can enhance T-cell responses in certain patients, probably via activated T cells, Tregs, and/or exhausted CD4+ T cells.


Subject(s)
Head and Neck Neoplasms , Immune Checkpoint Inhibitors , Papillomavirus Infections , Squamous Cell Carcinoma of Head and Neck , Humans , Immune Checkpoint Inhibitors/therapeutic use , Immune Checkpoint Inhibitors/pharmacology , Squamous Cell Carcinoma of Head and Neck/immunology , Squamous Cell Carcinoma of Head and Neck/virology , Squamous Cell Carcinoma of Head and Neck/drug therapy , Male , Female , Middle Aged , Aged , Head and Neck Neoplasms/immunology , Head and Neck Neoplasms/virology , Papillomavirus Infections/immunology , Papillomavirus Infections/virology , Antigens, Neoplasm/immunology , Oncogene Proteins, Viral/immunology , Tumor Suppressor Protein p53/immunology , Adult , Leukocytes, Mononuclear/immunology , Leukocytes, Mononuclear/metabolism , Papillomaviridae/immunology , T-Lymphocytes/immunology , Human Papillomavirus Viruses
2.
Virology ; 593: 110017, 2024 05.
Article in English | MEDLINE | ID: mdl-38382161

ABSTRACT

Bacteriophage Mu is a temperate phage known to infect various species of Enterobacteria, playing a role in bacterial mutation induction and horizontal gene transfer. The phage possesses two types of tail fibers important for host recognition, which enable it to expand its range of hosts. The alternate tail fibers are formed through the action of genes 49-50 or 52-51, allowing the Mu phage to recognize different surfaces of host cells. In a previous study, we presented the X-ray crystal structure of the C-terminal lipopolysaccharide (LPS)-binding domain of gene product (gp) 49, one of the subunits comprising the Mu tail fiber. In this study, we have determined the structure of the alternative tail fiber subunit, gp52, and compared it with other tail fibers. The results revealed that Mu phage employs different structural motifs for two individual tail fibers for recognizing different hosts.


Subject(s)
Bacteriophage mu , Bacteriophages , Bacteriophage mu/chemistry , Bacteriophage mu/genetics , Bacteriophages/genetics , Viral Tail Proteins/genetics
3.
Sensors (Basel) ; 23(6)2023 Mar 20.
Article in English | MEDLINE | ID: mdl-36991988

ABSTRACT

This paper presents a feasibility study on monitoring earthquake-caused furniture vibrations using radiofrequency identification (RFID) sensor tags. Finding unstable objects by exploiting the vibrations caused by weaker earthquakes is effective as one of the potential countermeasures for large-scale earthquakes in earthquake-prone areas. For this purpose, a previously proposed ultrahigh-frequency (UHF)-band RFID-based batteryless vibration/physical shock sensing system enabled long-term monitoring. This RFID sensor system introduced standby and active modes for long-term monitoring. This system enabled lower-cost wireless vibration measurements without affecting the vibration of furniture because the RFID-based sensor tags provide lightweight, low-cost, and battery-free operations. This RFID sensor system observed earthquake-cased furniture vibrations in a room on the fourth floor of a building eight stories high at Ibaraki University, Hitachi, Ibaraki, Japan. The observation results revealed that the RFID sensor tags identified the vibrations of furniture caused by earthquakes. The RFID sensor system also observed the vibration duration times of the objects in a room and specified the most unstable reference object. Hence, the proposed vibration sensing system helped achieve safe living in indoor environments.

4.
Genes (Basel) ; 14(2)2023 02 06.
Article in English | MEDLINE | ID: mdl-36833347

ABSTRACT

Natural antioxidants derived from plants exert various physiological effects, including antitumor effects. However, the molecular mechanisms of each natural antioxidant have not yet been fully elucidated. Identifying the targets of natural antioxidants with antitumor properties in vitro is costly and time-consuming, and the results thus obtained may not reliably reflect in vivo conditions. Therefore, to enhance understanding regarding the antitumor effects of natural antioxidants, we focused on DNA, one of the targets of anticancer drugs, and evaluated whether antioxidants, e.g., sulforaphane, resveratrol, quercetin, kaempferol, and genistein, which exert antitumor effects, induce DNA damage using gene-knockout cell lines derived from human Nalm-6 and HeLa cells pretreated with the DNA-dependent protein kinase inhibitor NU7026. Our results suggested that sulforaphane induces single-strand breaks or DNA strand crosslinks and that quercetin induces double-strand breaks. In contrast, resveratrol showed the ability to exert cytotoxic effects other than DNA damage. Our results also suggested that kaempferol and genistein induce DNA damage via unknown mechanisms. Taken together, the use of this evaluation system facilitates the analysis of the cytotoxic mechanisms of natural antioxidants.


Subject(s)
Antioxidants , DNA Breaks, Double-Stranded , Humans , Antioxidants/pharmacology , Kaempferols , Resveratrol , Quercetin , HeLa Cells , Genistein , DNA
5.
Sci Rep ; 13(1): 3233, 2023 Feb 24.
Article in English | MEDLINE | ID: mdl-36829054

ABSTRACT

Frequency-modulated continuous wave radar techniques typically have inadequate angular resolutions due to the limited aperture sizes of antenna arrays in spite of employing multiple-input multiple-output (MIMO) techniques. Therefore, despite the existence of multiple objects, angularly close objects with similar distances and relative velocities are recognized as one single object. Autonomous driving requires the accurate recognition of road conditions. This requirement is one of the critical issues to be solved to distinguish significantly close objects. This paper proposes a technique referred to as an antenna element space pseudo-peak suppressing (APPS) method to resolve angularly close targets. The proposed APPS method aims to identify closely spaced objects on roads. These angularly close targets cause a single peak in a spatial spectrum obtained by a beamformer-based angle estimation. The APPS considers this single peak as pseudo. The APPS radar cancels this pseudo peak from the spatial spectrum. Then, the obtained residual received signal is analyzed. With these procedures, the APPS identifies the number of targets. The APPS also estimates the target angles. The proposed APPS is experimentally validated using a typical single-chip MIMO-based radar evaluation board with three transmit (TX) and four receive (RX) antennas. The experimental results confirm that the proposed APPS successfully resolves angularly close pseudo targets with an angle difference of approximately [Formula: see text].

6.
Oral Oncol ; 136: 106270, 2023 01.
Article in English | MEDLINE | ID: mdl-36462328

ABSTRACT

OBJECTIVES: Exosome-mediated reciprocal crosstalk between tumor and stromal cells plays a crucial role in tumor development and progression. This study investigated whether exosomes released from head and neck squamous cell carcinoma (HNSCC) tumor cells can convert normal fibroblasts into cancer-associated fibroblasts (CAF)-like cells and further analyzed the functional characterization of fibroblasts educated by tumor-derived exosomes. MATERIALS AND METHODS: Exosomes secreted from HNSCC cell lines were isolated and normal fibroblasts were established from normal oropharyngeal mucosa. The effects of the exosomes on fibroblasts were examined by proliferation and migration assays, and exosome-educated fibroblasts were analyzed for the expression of eight genes (IL1B, IL6, CXCL8, TGFB1, ACTA2, FAP, CD274, and PDCD1LG2) by RT-qPCR. Moreover, T cells or CD14-positive cells were co-cultured with culture supernatants from exosome-educated fibroblasts. T-cell proliferation and macrophage polarization were examined using flow cytometry. Then, RNA sequencing (RNA-seq) of exosome-educated fibroblasts and the corresponding control fibroblasts was performed. RESULTS: Tumor-derived exosomes enhanced fibroblast proliferation and migration. Moreover, gene expression analysis revealed upregulation of the gene expression of proinflammatory cytokines and immunoregulatory genes, and activated fibroblast marker genes. The culture supernatants of tumor-derived exosome-educated fibroblasts suppressed T cell proliferation and the induction of protumoral macrophages compared with those of control fibroblasts. Next, comprehensive RNA-seq analysis data revealed the activation of 11 signaling pathways, including IL-6- and IL-17-related signaling. CONCLUSION: These results indicate that HNSCC tumor cells induce and/or differentiate into CAFs through exosome-based cell-to-cell communication to create an inflammatory tumor microenvironment.


Subject(s)
Cancer-Associated Fibroblasts , Exosomes , Head and Neck Neoplasms , Humans , Squamous Cell Carcinoma of Head and Neck/pathology , Cancer-Associated Fibroblasts/metabolism , Exosomes/metabolism , Tumor Microenvironment , Fibroblasts/metabolism , Cell Proliferation , Head and Neck Neoplasms/pathology , Cell Line, Tumor
7.
Genes Cells ; 27(5): 345-355, 2022 May.
Article in English | MEDLINE | ID: mdl-35194900

ABSTRACT

GPR85 is a member of the G protein-coupled receptor and is a super-conserved receptor expressed in the brain sub-family (Super Conserved Receptor Expressed in Brain; SREB) with GPR27 and GPR173. These three receptors are "orphan receptors"; however, their endogenous ligands have not been identified. SREB has garnered the interest of many scientists because it is expressed in the central nervous system and is evolutionarily conserved. In particular, brain mass is reported to be increased and learning and memory are improved in GPR85 knockout mice (Matsumoto et al. 2008). In this study, we characterized newly synthesized compounds using a GPR85-Gsα fusion protein and the [35 S]GTPγS binding assay and identified novel GPR85 inverse-agonists with IC50 values of approximately 1 µM. To analyze the neurochemical character of the compounds and investigate the physiological significance of GPR85, we used cerebellar Purkinje cells expressing GPR85 and an electrophysiological technique. Based on the results, the inverse-agonist compound for GPR85 modulated potassium channel opening. Together with the results of previous gene analysis of GPR85, we expect that the development of the GPR85 ligand will provide new insights into a few types of neurological disorders.


Subject(s)
Brain , Receptors, G-Protein-Coupled/metabolism , Animals , Brain/metabolism , Central Nervous System , Learning , Ligands , Mice , Receptors, G-Protein-Coupled/genetics
8.
Cancer Immunol Immunother ; 71(4): 851-863, 2022 Apr.
Article in English | MEDLINE | ID: mdl-34463793

ABSTRACT

Cancer immunotherapy using immune checkpoint inhibitors (ICIs) has been recognized as a novel therapeutic option for head and neck squamous cell carcinoma (HNSCC). However, only approximately 20-30% of patients with recurrent/metastatic (R/M) HNSCC benefit. Moreover, the mechanisms underlying the response to ICIs remain unclear. We investigated the proportion, activation status, and expression level of immune checkpoint molecules in circulating T cell subsets in R/M HNSCC patients treated with nivolumab using flow cytometry and mass cytometry, and then determined whether treatment response was associated with these values. We also assessed the changes in the frequency of tumor-associated antigens, MAGE-A4 and p53, -specific T cells prior to and after nivolumab treatment using the IFN-γ ELISPOT assay. The proportion of activated CD4+ and CD8+ TEMRA cells significantly increased in the disease-controlled patients but not in disease-progressed patients. As expected, the expression of PD-1 in T cells markedly decreased regardless of the therapeutic response. Meanwhile, T cell immunoglobulin mucin-3 expression on CD8+ T cells was significantly higher in patients with disease progression than in disease-controlled patients after treatment. The frequency of the tumor-associated antigens, MAGE-A4- and p53-specific T cells, was not correlated with clinical responses; however, in the disease-controlled patients, the frequency of MAGE-A4-specific T cells was significantly augmented. We concluded that in R/M HNSCC patients treated with nivolumab, circulating T cells show dynamic alterations depending on treatment efficacy. An analysis of the immunokinetics of circulating T cells could thus provide new insights into rational therapeutic strategies in cancer immunotherapy for HNSCC.


Subject(s)
Head and Neck Neoplasms , Nivolumab , Head and Neck Neoplasms/drug therapy , Humans , Neoplasm Recurrence, Local/drug therapy , Nivolumab/pharmacology , Squamous Cell Carcinoma of Head and Neck/drug therapy , T-Lymphocyte Subsets
9.
Sci Rep ; 11(1): 22990, 2021 11 26.
Article in English | MEDLINE | ID: mdl-34837022

ABSTRACT

This paper proposes a visual management scheme of medical things with a color-change radio frequency identification (RFID) tag. The color-change RFID tag employs a specific RFID tag integrated circuit (IC) and a laminated pH-indicating paper. The IC has energy harvesting and switched ground functions, which enable it to generate electricity to the laminated pH-indicating paper. This phenomenon causes electrolysis of NaCl solution absorbed in the laminated pH-indicating paper. Electrolysis generates alkaline matter to change the color of the pH-indicating paper. This paper gives a new and sensitive structure of the laminated pH-indicating paper. The proposed advanced color-change RFID tag with new laminated pH-indicating paper succeeds in changing its color noticeably at a 1 m distance using an RFID reader radiating 1 W radio waves. The color change was observed 3-5 s after starting radio wave irradiation. The results of this experiment also confirm that the changed color can be held for over 24 h. Furthermore, two demonstrations of the visual management system of medical things (patient clothes and sanitizers) are presented.

10.
J Mater Sci Mater Med ; 32(6): 58, 2021 May 17.
Article in English | MEDLINE | ID: mdl-33999320

ABSTRACT

The evaluation of antitumor immune responses is essential for immune monitoring to predict clinical outcomes as well as treatment efficacies in cancer patients. In this study, we produced two tumor antigen (TA) proteins, melanoma antigen family A4 and wild type p53, using TG silkworm systems and evaluated anti-TA-specific immune responses by enzyme-linked immunosorbent spot assays in patients with head and neck cancer. Eleven (61.1%) of 18 patients showed significant IFN-γ production in response to at least one TA; however, the presence of TA-specific immune responses did not significantly contribute to better prognosis (overall survival, p = 0.1768; progression-free survival, p = 0.4507). Further studies will need to be performed on a larger scale to better assess the clinical significance of these systems. The production of multiple TA proteins may provide new avenues for the development of immunotherapeutic strategies to stimulate a potent and specific immune response against tumor cells as well as precise assessment of antitumor immune responses in cancer patients.


Subject(s)
Antigens, Neoplasm/chemistry , Head and Neck Neoplasms/immunology , Immune System , Immunotherapy/methods , Adult , Aged , Animals , Animals, Genetically Modified , Antigens, Neoplasm/biosynthesis , Bombyx , Female , Head and Neck Neoplasms/diagnosis , Head and Neck Neoplasms/therapy , Humans , Immunity , Immunohistochemistry , In Vitro Techniques , Kaplan-Meier Estimate , Leukocytes, Mononuclear/cytology , Male , Middle Aged , Neoplasm Proteins/biosynthesis , Progression-Free Survival , Tumor Suppressor Protein p53/biosynthesis
11.
Curr Microbiol ; 78(4): 1267-1276, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33638001

ABSTRACT

The bacterium Staphylococcus aureus, which colonizes healthy human skin, may cause diseases, such as atopic dermatitis (AD). Treatment for such AD cases involves antibiotic use; however, alternate treatments are preferred owing to the development of antimicrobial resistance. This study aimed to characterize the novel bacteriophage SaGU1 as a potential agent for phage therapy to treat S. aureus infections. SaGU1 that infects S. aureus strains previously isolated from the skin of patients with AD was screened from sewage samples in Gifu, Japan. Its genome was sequenced and analyzed using bioinformatics tools, and the morphology, lytic activity, stability, and host range of the phage were determined. The SaGU1 genome was 140,909 bp with an average GC content of 30.2%. The viral chromosome contained 225 putative protein-coding genes and four tRNA genes, carrying neither toxic nor antibiotic resistance genes. Electron microscopy analysis revealed that SaGU1 belongs to the Myoviridae family. Stability tests showed that SaGU1 was heat-stable under physiological and acidic conditions. Host range testing revealed that SaGU1 can infect a broad range of S. aureus clinical isolates present on the skin of AD patients, whereas it did not kill strains of Staphylococcus epidermidis, which are symbiotic resident bacteria on human skin. Hence, our data suggest that SaGU1 is a potential candidate for developing a phage therapy to treat AD caused by pathogenic S. aureus.


Subject(s)
Dermatitis, Atopic , Staphylococcus aureus , Genome, Viral , Humans , Japan , Staphylococcus Phages/genetics , Staphylococcus aureus/genetics
12.
Viruses ; 13(1)2020 12 22.
Article in English | MEDLINE | ID: mdl-33375201

ABSTRACT

Atopic dermatitis is accompanied by the abnormal overgrowth of Staphylococcus aureus, a common cause of skin infections and an opportunistic pathogen. Although administration of antibiotics is effective against S. aureus, the resulting reduction in healthy microbiota and the emergence of drug-resistant bacteria are of concern. We propose that phage therapy can be an effective strategy to treat atopic dermatitis without perturbing the microbiota structure. In this study, we examined whether the S. aureus phage SaGU1 could be a tool to counteract the atopic exacerbation induced by S. aureus using an atopic mouse model. Administration of SaGU1 to the back skin of mice reduced both S. aureus counts and the disease exacerbation caused by S. aureus. Furthermore, the S. aureus-mediated exacerbation of atopic dermatitis with respect to IgE plasma concentration and histopathological findings was ameliorated by the application of SaGU1. We also found that Staphylococcus epidermidis, a typical epidermal symbiont in healthy skin, significantly attenuated the emergence of SaGU1-resistant S. aureus under co-culture with S. aureus and S. epidermidis in liquid culture infection experiments. Our results suggest that phage therapy using SaGU1 could be a promising clinical treatment for atopic dermatitis.


Subject(s)
Dermatitis, Atopic/etiology , Dermatitis, Atopic/therapy , Staphylococcal Infections/microbiology , Staphylococcal Infections/therapy , Staphylococcus Phages/physiology , Staphylococcus aureus/virology , Staphylococcus epidermidis/physiology , Antibiosis , Bacteriolysis , Biopsy , Combined Modality Therapy , Dermatitis, Atopic/pathology , Disease Resistance/genetics , Host-Pathogen Interactions , Humans , Phage Therapy , Staphylococcal Infections/pathology
13.
Biosci Biotechnol Biochem ; 84(12): 2484-2490, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32867616

ABSTRACT

Discovery of small-molecule inducers of unique phenotypic changes combined with subsequent target identification often provides new insights into cellular functions. Here, we applied integrated profiling based on cellular morphological and proteomic changes to compound screening. We identified an indane derivative, NPD9055, which is mechanistically distinct from reference compounds with known modes of action. Employing a chemical proteomics approach, we then showed that NPD9055 binds subunits of heterotrimeric G-protein Gi. An in vitro [35S]GTPγS-binding assay revealed that NPD9055 inhibited GDP/GTP exchange on a Gαi subunit induced by a G-protein-coupled receptor agonist, but not on another G-protein from the Gαs family. In intact HeLa cells, NPD9055 induced an increase in intracellular Ca2+ levels and ERK/MAPK phosphorylation, both of which are regulated by Gßγ, following its dissociation from Gαi. Our observations suggest that NPD9055 targets Gαi and thus regulates Gßγ-dependent cellular processes, most likely by causing the dissociation of Gßγ from Gαi.


Subject(s)
Drug Discovery , Heterotrimeric GTP-Binding Proteins/metabolism , Phenotype , Proteomics , Small Molecule Libraries/pharmacology , Cell Line, Tumor , Humans
14.
Protein Expr Purif ; 176: 105723, 2020 12.
Article in English | MEDLINE | ID: mdl-32768455

ABSTRACT

Silkworms are economically important insects that have the ability to produce large amounts of silk. They have mass breeding methods and silk glands, which are specialized tissues that secrete silk fibroin and sericin. Thus, the production of recombinant proteins in a transgenic silkworm system is a promising approach. We developed a silkworm, Bombyx mori, as a host expression insect for recombinant proteins and successfully produced different proteins including antibodies, glycoproteins, and membrane receptors. The thyroid hormone receptor (TR) is a regulatory factor for many physiological phenomena. It is a lipophilic protein that has DNA-binding and ligand-binding domains. Based on our previous experiences, it was inferred that the recombinant TR easily formed aggregates and precipitates which is potentially due to an unstructured hinge domain. We applied the silkworm expression system to produce mice TRß1 that was fused with glutathione S-transferase. Using 160 larvae, the yield of the recombinant GST-TRß was approximately 4 mg, and the purified GST-TRß completely retained its physiological activity. Our results indicated that the recombinant TRß was secreted extracellularly using the silk fibroin signal peptide sequence. Moreover, we found that the expression system of silkworms was applicable to nuclear proteins.


Subject(s)
Animals, Genetically Modified , Bombyx , Thyroid Hormone Receptors beta , Animals , Animals, Genetically Modified/genetics , Animals, Genetically Modified/metabolism , Bombyx/genetics , Bombyx/metabolism , DNA/chemistry , DNA/metabolism , Mice , Protein Binding , Thyroid Hormone Receptors beta/biosynthesis , Thyroid Hormone Receptors beta/chemistry , Thyroid Hormone Receptors beta/genetics , Thyroid Hormone Receptors beta/isolation & purification
15.
Neuropathology ; 40(5): 501-506, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32677221

ABSTRACT

We report a 50-year-old man who developed fatal brainstem infarction five days after traumatic cervical vertebral artery dissection (CVAD). Autopsy revealed multiple fresh infarcts in the territory of the vertebrobasilar system. No thrombus was found in the infarct lesions. The cervical vertebral artery (CVA) showed severe atherosclerotic stenosis extending to the proximal half of the left side, similar stenosis at the origin on the right side, fresh thrombotic occlusion extending to the proximal half of the right side, and multiple dissections in the distal foraminal segments on both sides. In the distal half of the basilar artery (BA) and the origin of the right posterior cerebral artery (PCA), the lumen was extensively filled with fresh thrombus. Although an intricate mixture of white and red thrombi filled the lumen at the origin of the right PCA, the white thrombus gradually appeared at the periphery whereas the red thrombus occupied the central and more proximal part of the BA. We confirm that cerebral infarction associated with CVAD is due not only to emboli originating from the dislodged thrombus at sites of arterial dissection, as reported previously, but also to newly formed thrombus in the cerebral arteries caused by impaired blood flow, as was seen in the present case.


Subject(s)
Cerebral Infarction/pathology , Intracranial Thrombosis/pathology , Neurosurgical Procedures/adverse effects , Vertebral Artery Dissection/pathology , Cerebral Infarction/etiology , Cervical Vertebrae/pathology , Humans , Intracranial Thrombosis/etiology , Male , Middle Aged , Vertebral Artery Dissection/etiology
16.
J Biochem ; 166(6): 529-535, 2019 Dec 01.
Article in English | MEDLINE | ID: mdl-31504613

ABSTRACT

In the history of viral research, one of the important biological features of bacteriophage Mu is the ability to expand its host range. For extending the host range, the Mu phage encodes two alternate tail fibre genes. Classical amber mutation experiments and genome sequence analysis of Mu phage suggested that gene products (gp) of geneS (gpS = gp49) and gene S' (gpS' = gp52) are tail fibres and that gene products of geneU (gpU = gp50) and geneU' (gpU' = gp51) work for tail fibre assembly or tail fibre chaperones. Depending on the gene orientation, a pair of genes 49-50 or 52-51 is expressed for producing different tail fibres that enable Mu phage to recognize different host cell surface. Since several fibrous proteins including some phage tail fibres employ their specific chaperone to facilitate folding and prevent aggregation, we expected that gp50 or gp51 would be a specific chaperone for gp49 and gp52, respectively. However, heterologous overexpression results for gp49 or gp52 (tail fibre subunit) together with gp51 and gp50, respectively, were also effective in producing soluble Mu tail fibres. Moreover, we successfully purified non-native gp49-gp51 and gp52-gp50 complexes. These facts showed that gp50 and gp51 were fungible and functional for both gp49 and gp52 each other.


Subject(s)
Bacteriophage mu/chemistry , Molecular Chaperones/chemistry , Amino Acid Sequence , Bacteriophage mu/genetics , Bacteriophage mu/isolation & purification , Binding Sites , Crystallization , Lipopolysaccharides/chemistry , Molecular Chaperones/genetics , Molecular Chaperones/isolation & purification , Sequence Alignment
17.
Nat Microbiol ; 4(10): 1645-1653, 2019 10.
Article in English | MEDLINE | ID: mdl-31209305

ABSTRACT

Phage tail fibres are elongated protein assemblies capable of specific recognition of bacterial surfaces during the first step of viral infection1-4. The folding of these complex trimeric structures often requires a phage-encoded tail fibre assembly (Tfa) protein5-7. Despite the wide occurrence of Tfa proteins, their functional mechanism has not been elucidated. Here, we investigate the tail fibre and Tfa of Escherichia coli phage Mu. We demonstrate that Tfa forms a stable complex with the tail fibre, and present a 2.1 Å resolution X-ray crystal structure of this complex. We find that Tfa proteins are comprised of two domains: a non-conserved N-terminal domain that binds to the C-terminal region of the fibre and a conserved C-terminal domain that probably mediates fibre oligomerization and assembly. Tfa forms rapidly exchanging multimers on its own, but not a stable trimer, implying that Tfa does not specify the trimeric state of the fibre. We propose that the key conserved role of Tfa is to ensure that fibre assembly and multimerization initiates at the C terminus, ensuring that the intertwined and repetitive structural elements of fibres come together in the correct sequence. The universal importance of correctly aligning the C termini of phage fibres is highlighted by our work.


Subject(s)
Bacteriophages/physiology , Viral Proteins/chemistry , Viral Proteins/metabolism , Amino Acid Sequence , Bacteriophages/classification , Crystallography, X-Ray , Escherichia coli/metabolism , Escherichia coli/virology , Models, Molecular , Protein Binding , Protein Folding , Protein Multimerization , Sequence Alignment , Structure-Activity Relationship , Viral Proteins/genetics , Viral Tail Proteins/chemistry , Viral Tail Proteins/genetics , Viral Tail Proteins/metabolism
18.
J Biochem ; 166(4): 317-322, 2019 Oct 01.
Article in English | MEDLINE | ID: mdl-31119277

ABSTRACT

Recent studies have revealed that not only proton-sensing channels, but also one family of G protein-coupled receptors (GPCRs) comprising OGR1, GPR4, G2A and TDAG8 are responsible for the sensing of extracellular protons, or pH. Here, we report that two other GPCRs, GPR31 and GPR151, were also activated in acidic condition. Elevated pH of assay mixtures resulted in a remarkable increase in [35S]GTPγS binding by GPR31-Giα and GPR151-Giα fusion proteins in a narrow range between pH 6 and 5. Our reporter gene assays with CHO cells expressing recombinant GPR31 or GPR151 also showed that activation was maximal at pH ∼5.8. Although these results from in vitro and cellular assays revealed slightly different pH sensitivities, all of our results indicated that GPR31 and GPR151 sensed extracellular protons equally well as other proton-sensing GPCRs.

19.
Neuropathology ; 2018 Jun 06.
Article in English | MEDLINE | ID: mdl-29876971

ABSTRACT

Neuropathological examinations of the brain in cases of brain death are usually insufficient because of autolysis. We examined a case of sporadic-type cerebral amyloid angiopathy-related hemorrhage (sCAA-H) in a 74-year-old Japanese woman who had been clinically established as brain dead 7 days before cardiac arrest. The brain was macerated, and a huge hematoma was evident in the right parieto-occipital region. Ordinary neuropathological examination was unable to clarify where the hematoma was located in the brain parenchyma or the subarachnoid space (SAS). Immunohistochemistry for amyloid-ß (Aß) and synaptophysin revealed that: (i) the hematoma affected the cerebral sulcus, cerebral cortex (CC) and subcortical white matter; (ii) the CC was destroyed at the depth of the cerebral sulcus; (iii) in three 6-µm-thick sections, ruptured Aß-positive vessels were seen only in the intrasulcal hematoma and not in the CC or intracerebral hematoma; and (iv) in the CC adjacent to the intrasulcal hematoma, a few macrophages were observed, indicating a fresh infarct of the CC. These findings indicate that sCAA-H occurred first in the cerebral sulcus due to rupture of multiple meningeal vessels, as had been documented in our previous reports. The present study shows that even in an autolytic dead brain, immunohistochemistry is more useful than ordinary staining methods. Other than double-barreled vessels, several vascular changes such as fibrinoid degeneration, segmental dilatation (so-called micro-aneurysmal dilatation), and hyalinous onion-like change of the intima were seen in the intrasulcal hematoma, SAS and CC. Interestingly these vascular changes were not observed in the ruptured Aß-positive vessels. More detailed studies will be needed to examine the correlation between these vascular changes and vessel rupture.

20.
Genes Cells ; 23(7): 528-536, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29767456

ABSTRACT

Tailed bacteriophages (Caudovirales) are divided into three families: Myoviridae with long contractile tails, Siphoviridae with long noncontractile tails and Podoviridae with short noncontractile tails. All have an icosahedral head with a portal vertex connected to a neck structure followed by a tail. Bacteriophage Mu belongs to the Myoviridae family. Herein, the gp29 portal subunit and neck subunits gp35, gp36 and gp37 of the Mu phage were purified to elucidate their arrangement in the neck. Both gp29 and gp36 were monomeric in solution, like the corresponding subunits of Podoviridae P22 and Siphoviridae SPP1. X-ray crystal structure of gp36 showed structural similarity to neck subunits of Siphoviridae and Podoviridae. The gp36 structure has a characteristic aromatic hydrophobic core, and the structure of the ring form of the Mu phage connector deduced from the Siphoviridae and Podoviridae connector showed that this feature builds the contact surface between gp36 subunits. Structural comparison with the neck of Siphoviridae and Podoviridae also implies direct interaction between gp36 and gp29. Because gp35 and gp36 form a stable complex, we predict that the head-portal ring (gp29), the connector complex (gp36 and gp35), the tail terminator (gp37) and the tube (gp40) are arranged in the Mu phage neck in this order.


Subject(s)
Myoviridae/ultrastructure , Podoviridae/ultrastructure , Siphoviridae/ultrastructure , Bacteriophages/physiology , Caudovirales/physiology , Caudovirales/ultrastructure , Crystallography, X-Ray/methods , DNA, Viral , Genome, Viral , Myoviridae/physiology , Podoviridae/physiology , Protein Conformation , Siphoviridae/physiology
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