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1.
Phys Chem Chem Phys ; 22(44): 25584-25592, 2020 Nov 18.
Article in English | MEDLINE | ID: mdl-33146658

ABSTRACT

Nuclear Quadrupole Resonance (NQR) provides spectra carrying information as to the electric-field gradient around nuclei with a spin quantum number I > 1/2 and offers helpful clues toward characterizing the electronic structure of materials of chemical interest. A major challenge in NQR is finding hitherto unknown resonance frequencies, which can scatter over a wide range, requiring time consuming repetitive measurements with stepwise frequency increments. Here, we report on an efficient, two-step NQR protocol by bringing rapid-scan and frequency-comb together. In the first step, wideband excitation and simultaneous signal acquisition, both realized by a non-adiabatic, frequency-swept hyperbolic secant (HS) pulse with comb modulation, offers a clue for the existence/absence of the resonance within the frequency region under investigation. When and only when the sign of the resonance has been detected, the second step is implemented to compensate the limited detection bandwidth of the first and to unambiguously determine the NQR frequency. We also study the spin dynamics under the comb-modulated HS pulse by numerical simulations, and experimentally demonstrate the feasibility of the proposed scheme, which is referred to as RApid-Scan with GApped excitation with Dual-mode Operation (RASGADO) NQR.

2.
Solid State Nucl Magn Reson ; 101: 82-88, 2019 09.
Article in English | MEDLINE | ID: mdl-31132715

ABSTRACT

To examine bonding nature of fluorine ligands in a metal coordinated system, 19F high-resolution solid-state NMR has been applied to TiF4, which bears both bridging and terminal fluorines. Observed 12 isotropic signals are assigned to 12 crystallographically different fluorines (6 terminal and 6 bridging fluorines) in TiF4 by referring to the calculated isotropic shifts using density functional theory (DFT). The isotropic chemical shift (δiso) for terminal F (FT) appears at high frequency (420-480 ppm from δ(CCl3F) = 0 ppm) with large shielding anisotropy Δσ ∼ 850 ppm. Whereas the δiso and Δσ values for bridging F (FB) are moderate; δiso ∼ 0-25 ppm and Δσ ∼ 250 ppm. The origin of the observed high-frequency shift for FT is ascribed to the second-order paramagnetic shift with increased covalency, shorter Ti-F bonds, and smaller energy difference between the occupied and vacant orbitals. Examination of the orientation of the shielding tensor relative to the molecular structure shows that the most deshielded component of the shielding tensor is oriented along the Ti-F bond. The characteristic orientation is consistent with a Ti-F σ bond formed by dYZ of Ti and pz of F. Further, we show that the selectively observed spinning sideband patterns and the theoretical patterns with the calculated Δσ and η (shielding asymmetry) values are not consistent with each other for FB, indicating deficiency of the present DFT calculation in evaluating Δσ.

3.
Cell Chem Biol ; 26(7): 950-959.e8, 2019 07 18.
Article in English | MEDLINE | ID: mdl-31031141

ABSTRACT

Naturally occurring pradimicins (PRMs) show specific recognition of d-mannose (d-Man) in aqueous media, which has never been achieved by artificial small molecules. Although the Ca2+-mediated dimerization of PRMs is essential for their d-Man binding, the dimeric structure has yet to be elucidated, leaving the question open as to how PRMs recognize d-Man. Thus, we herein report the structural elucidation of the dimer by a combination of X-ray crystallography and solid-state NMR spectroscopy. Coupled with our previous knowledge regarding the d-Man binding geometry of PRMs, elucidation of the dimer allowed reliable estimation of the mode of d-Man binding. Based on the binding model, we further developed an azide-functionalized PRM derivative (PRM-Azide) with d-Man binding specificity. Notably, PRM-Azide stained Candida rugosa cells having mannans on their cell surface through conjugation with the tetramethylrhodamine fluorophore. The present study provides the practical demonstration that PRMs can serve as lectin mimics for use in glycobiological studies.


Subject(s)
Actinobacteria/ultrastructure , Anthracyclines/metabolism , Mannose/metabolism , Actinobacteria/metabolism , Anthracyclines/chemistry , Binding Sites , Cell Membrane , Crystallography, X-Ray/methods , Dimerization , Humans , Magnetic Resonance Spectroscopy
4.
J Magn Reson ; 297: 146-151, 2018 12.
Article in English | MEDLINE | ID: mdl-30396156

ABSTRACT

We propose a variant of covariance NMR spectroscopy, namely, inner-product NMR spectroscopy, originally suggested in Takeda (2015). The mathematical operation of inner-product NMR is the same as that of covariance NMR, except that subtraction of the average value of the variable is intentionally omitted, so that the correspondence of the spectrum with that of conventional two-dimensional Fourier-transformation is established without having to request the average to become vanishingly small. We demonstrate inner-product NMR for 13C DARR correlation experiments in a polycrystalline sample of 13C-labeled l-alanine. In covariance, we show that the mixing-time dependence of the peaks is influenced considerably by the choice of the carrier frequency and thereby the center of the spectrum, whereas the inner-product approach is free from such an undesirable effect, while keeping the merit of the covariance NMR.

5.
J Phys Chem Lett ; 8(12): 2555-2559, 2017 Jun 15.
Article in English | MEDLINE | ID: mdl-28534619

ABSTRACT

Ligand-surface interaction of semiconductor nanoparticles (NPs) controls their optoelectronic properties, and thus examination of the interaction is essential for the nanoelectronic applications of NPs. Herein, solid-state nuclear magnetic resonance (NMR) is performed to unravel the ligand-surface interaction in cysteine-capped CdSe magic-sized clusters. 15N-113Cd through-bond J-filtered NMR directly shows the presence of the nitrogen-cadmium chemical bond for the first time and indicates that ∼43% of the amines form the chemical bond. 15N-113Cd through-space dipolar-correlated NMR reveals that ∼54% of the amines locate nearby the surface cadmium with the average nitrogen-cadmium distance of 0.247 nm. The average distance is comparable with that estimated by J-filtered NMR. The difference of the two ratios (∼11%) proposes that some amines locate on the surface without forming the chemical bond, and these amines affect the relatively long observed distance in the dipolar-based experiment. Our study shows effectiveness of solid-state NMR for investigation of the ligand-surface interactions of NPs.

6.
J Chem Phys ; 146(15): 154202, 2017 Apr 21.
Article in English | MEDLINE | ID: mdl-28433023

ABSTRACT

Rotational resonance (R2) is one of the widely applied techniques in solid-state NMR for recoupling a homonuclear dipolar interaction under magic-angle spinning (MAS). R2 occurs as the result of interference between the difference of the chemical shifts and MAS. In this work, we extend R2 to a heteronuclear dipolar interaction in the interaction frame of RF irradiation. Based on the average Hamiltonian theory, we show that the recoupling of the heteronuclear dipolar (I-S) interaction occurs at the recoupling conditions written as ΩI'±ΩS'=kωr (k=0,±1,±2), where ΩX' is the RF offset for spin-X (X = I or S) scaled by RF irradiation. The new recoupling sequence for a heteronuclear spin pair is referred to as offset-driven cross polarization along the z axis (OD-CPZ). With the robustness for RF inhomogeneity and ten recoupling conditions to choose, OD-CPZ can be a useful frequency-selective cross polarization method. Experiments and numerical simulations are shown with the results of the theoretical analysis.

7.
Biochemistry ; 56(3): 468-472, 2017 01 24.
Article in English | MEDLINE | ID: mdl-28029239

ABSTRACT

Pradimicin A (PRM-A) is a unique natural product that recognizes d-mannopyranoside (Man) in the presence of Ca2+ ion. Although the Man binding geometry of PRM-A is largely understood, the molecular basis of Man recognition has yet to be established because of the lack of information regarding Ca2+ binding geometry. In this work, to examine the Ca2+ binding site of PRM-A, we performed a solid-state nuclear magnetic resonance experiment using 111Cd2+ as a surrogate probe for Ca2+. Evaluation of 13C-111Cd distances in the [PRM-A/111Cd2+] complexes by rotational-echo double resonance (REDOR) and 111Cd frequency selective REDOR (FSR) revealed that PRM-A binds 111Cd2+ at the anthraquinone moiety, which contradicts the previous hypothesis of the alanine moiety being the Ca2+ and Cd2+ binding sites of PRM-A. The distances between Cd2+ and the carbon atoms at the binding site of PRM-A were found to be 3.5 ± 0.2 Å. Importantly, Man binding was shown not to alter the distances, indicating that [PRM-A/Ca2+] and [PRM-A/Ca2+/Man] complexes have similar Ca2+ binding geometries. This study provides an important clue to understanding the molecular basis of Man recognition of PRM-A.


Subject(s)
Anthracyclines/chemistry , Cadmium/chemistry , Calcium/chemistry , Mannose/chemistry , Binding Sites , Isotopes , Magnetic Resonance Spectroscopy/methods , Molecular Mimicry , Molecular Structure
8.
J Magn Reson ; 274: 1-6, 2017 01.
Article in English | MEDLINE | ID: mdl-27835747

ABSTRACT

The double-acquisition scheme for efficient data collection of hypercomplex data (the States method) of a two-dimensional experiment is adopted to magic-angle hopping (MAH) and magic-angle turning (MAT) experiments, which are powerful methods to measure the principal values of the chemical shift anisotropy (CSA) in a powder sample. It is shown that the double acquisition MAT (DAMAT) sequence realizes the S/N ratio comparable to or better than those of other variants of the MAH/MAT sequences. In addition, we show that DAMAT has preferable features that there are no spinning sidebands in the indirect dimension, and no spectral shearing is necessary.

9.
J Chem Phys ; 145(13): 134201, 2016 Oct 07.
Article in English | MEDLINE | ID: mdl-27782417

ABSTRACT

We propose a simple data-analysis scheme to determine the coupling constant and the asymmetry parameter of nuclear quadrupolar interactions in field-swept nuclear magnetic resonance (NMR) for static powder samples. This approach correlates the quadrupolar parameters to the positions of the singularities, which can readily be found out as sharp peaks in the field-swept pattern. Moreover, the parameters can be determined without quantitative acquisition and elaborate calculation of the overall profile of the pattern. Since both experimental and computational efforts are significantly reduced, the approach presented in this work will enhance the power of the field-swept NMR for yet unexplored quadrupolar nuclei. We demonstrate this approach in 33S in α-S8 and 35Cl in chloranil. The accuracy of the obtained quadrupolar parameters is also discussed.

10.
J Magn Reson ; 258: 1-5, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26150376

ABSTRACT

Even though microcoils improve the sensitivity of NMR measurement of tiny samples, magnetic-field inhomogeneity due to the bulk susceptibility effect of the coil material can cause serious resonance-line broadening. Here, we propose to fabricate the microcoil using a thin, hollow copper capillary instead of a wire and fill paramagnetic liquid inside the capillary, so as to cancel the diamagnetic contribution of the copper. Susceptibility cancellation is demonstrated using aqueous solution of NiSO4. In addition, the paramagnetic liquid serves as coolant when it is circulated through the copper capillary, effectively transferring the heat generated by radiofrequency pulses.

11.
J Magn Reson ; 256: 1-8, 2015 Jul.
Article in English | MEDLINE | ID: mdl-25956137

ABSTRACT

A new method for precise setting of the spinning angle to the magic angle by using a saddle coil is described. The coil, which is referred to as an X0 shim coil, is wound to produce a uniform static magnetic field Bx perpendicular to the main magnetic field B0. The magnetic field felt by a sample is a vector sum of the main field B0 and the transverse field Bx produced by the X0 shim coil. Hence the angle between the spinner axis and the effective magnetic field can be controlled by current I supplied to the X0 shim coil, leading to precise angle adjustment without backlash accompanied with a mechanical system conventionally used. It is shown that the angle range achieved is ±0.05° for I=±5A at B0=7T.

12.
J Chem Phys ; 142(13): 134201, 2015 Apr 07.
Article in English | MEDLINE | ID: mdl-25854235

ABSTRACT

We here revisit expansion schemes used in nuclear magnetic resonance (NMR) for the calculation of effective Hamiltonians and propagators, namely, Magnus, Floquet, and Fer expansions. While all the expansion schemes are powerful methods there are subtle differences among them. To understand the differences, we performed explicit calculation for heteronuclear dipolar decoupling, cross-polarization, and rotary-resonance experiments in solid-state NMR. As the propagator from the Fer expansion takes the form of a product of sub-propagators, it enables us to appreciate effects of time-evolution under Hamiltonians with different orders separately. While 0th-order average Hamiltonian is the same for the three expansion schemes with the three cases examined, there is a case that the 2nd-order term for the Magnus/Floquet expansion is different from that obtained with the Fer expansion. The difference arises due to the separation of the 0th-order term in the Fer expansion. The separation enables us to appreciate time-evolution under the 0th-order average Hamiltonian, however, for that purpose, we use a so-called left-running Fer expansion. Comparison between the left-running Fer expansion and the Magnus expansion indicates that the sign of the odd orders in Magnus may better be reversed if one would like to consider its effect in order.

13.
J Chem Phys ; 141(22): 224202, 2014 Dec 14.
Article in English | MEDLINE | ID: mdl-25494742

ABSTRACT

The effect of (1)H decoupling in magic-angle spinning solid-state NMR is studied under radiofrequency irradiation causing simultaneous nutations around a pair of orthogonal axes. Double-nutation with an arbitrary pair of nutation frequencies is implemented through modulation of the amplitude, phase, and frequency of the transmitting pulses. Similarity and difference of double-nutation decoupling and two-pulse phase-modulation decoupling schemes [A. E. Bennett, C. M. Rienstra, M. Auger, K. V. Lakshmi, and R. G. Griffin, J. Chem. Phys. 103, 6951-6958 (1995) and I. Scholz, P. Hodgkinson, B. H. Meier, and M. Ernst, J. Chem. Phys. 130, 114510 (2009)] are discussed. The structure of recoupling bands caused by interference of the (1)H spin nutation with sample spinning is studied by both experiments and numerical simulations.

14.
J Magn Reson ; 246: 57-61, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25080372

ABSTRACT

We propose a new passive shimming strategy for variable-field NMR experiments, in which the magnetic field produced by paramagnetic shim pieces placed inside the magnet bore compensates the inhomogeneity of a variable-field magnet for a wide range of magnet currents. Paramagnetic shimming is demonstrated in (7)Li, (87)Rb, and (45)Sc NMR of a liquid solution sample in magnetic fields of 3.4, 4.0, and 5.4T at a fixed carrier frequency of 56.0MHz. Since both the main-field inhomogeneity and the paramagnetic magnetization are proportional to the main-magnet current, the resonance lines are equally narrowed by the improved field homogeneity with an identical configuration of the paramagnetic shim pieces. Paramagnetic shimming presented in this work opens the possibility of high-resolution variable-field NMR experiments.

15.
J Magn Reson ; 245: 94-7, 2014 Aug.
Article in English | MEDLINE | ID: mdl-25023565

ABSTRACT

We propose a cross polarization (CP) sequence effective under magic-angle spinning (MAS) which is tolerant to RF field inhomogeneity and Hartmann-Hahn mismatch. Its key feature is that spin locking is not used, as CP occurs among the longitudinal (Z) magnetizations modulated by the combination of two pulses with the opposite phases. We show that, by changing the phases of the pulse pairs synchronized with MAS, the flip-flop term of the dipolar interaction is restored under MAS.

16.
Solid State Nucl Magn Reson ; 55-56: 42-7, 2013.
Article in English | MEDLINE | ID: mdl-23953427

ABSTRACT

We explore modulation-sideband recoupling conditions of the (13)C-(13)C Second-order Hamiltonian among Analogous nuclei plus pulse sequence (SHA+), and found that this sequence can be used in two different recoupling regimes. The first regime, νR>Δνiso(max), is recommended for broad-band recoupling to avoid any rotational resonance broadening. In this regime, the spinning speed should be only slightly larger than Δνiso(max), to obtain the best transfer efficiency. The second regime, νR<Δνiso(max), can be used to observe long-range constraints with lower spinning speed, which increases the transfer efficiency, and may allow using bigger rotors to increase the S/N ratio.


Subject(s)
Magnetic Resonance Spectroscopy/methods , Amyloid beta-Peptides/chemistry , Models, Molecular , Peptide Fragments/chemistry , Protein Conformation , Time Factors
17.
Chemistry ; 19(32): 10516-25, 2013 Aug 05.
Article in English | MEDLINE | ID: mdl-23832850

ABSTRACT

Pradimicins (PRMs) and benanomicins are the only family of non-peptidic natural products with lectin-like properties, that is, they recognize D-mannopyranoside (Man) in the presence of Ca(2+) ions. Coupled with their unique Man binding ability, they exhibit antifungal and anti-HIV activities through binding to Man-containing glycans of pathogens. Notwithstanding the great potential of PRMs as the lectin mimics and therapeutic leads, their molecular basis of Man recognition has yet to be established. Their aggregate-forming propensity has impeded conventional interaction analysis in solution, and the analytical difficulty is exacerbated by the existence of two Man binding sites in PRMs. In this work, we investigated the geometry of the primary Man binding of PRM-A, an original member of PRMs, by the recently developed analytical strategy using the solid aggregate composed of the 1:1 complex of PRM-A and Man. Evaluation of intermolecular distances by solid-state NMR spectroscopy revealed that the C2-C4 region of Man is in close contact with the primary binding site of PRM-A, while the C1 and C6 positions of Man are relatively distant. The binding geometry was further validated by co-precipitation experiments using deoxy-Man derivatives, leading to the proposal that PRM-A binds not only to terminal Man residues at the non-reducing end of glycans, but also to internal 6-substituted Man residues. The present study provides new insights into the molecular basis of Man recognition and glycan specificity of PRM-A.


Subject(s)
Anthracyclines/chemistry , Mannose/chemistry , Anti-HIV Agents/chemistry , Antifungal Agents/chemistry , Binding Sites , Candida albicans/metabolism , Hydrogen Bonding , Lectins/chemistry , Lectins/metabolism , Magnetic Resonance Spectroscopy
18.
Phys Chem Chem Phys ; 15(19): 7403-10, 2013 May 21.
Article in English | MEDLINE | ID: mdl-23580152

ABSTRACT

A novel statistical approach for analyzing (1)H multiple-quantum (MQ) spin dynamics in so-called spin-counting solid-state NMR experiments is presented. The statistical approach is based on the percolation theory with Monte Carlo methods and is examined by applying it to the experimental results of three solid samples having unique hydrogen arrangement for 1-3 dimensions: the n-alkane/d-urea inclusion complex as a one-dimensional (1D) system, whose (1)H nuclei align approximately in 1D, and magnesium hydroxide and adamantane as a two-dimensional (2D) and a three-dimensional (3D) system, respectively. Four lattice models, linear, honeycomb, square and cubic, are used to represent the (1)H arrangement of the three samples. It is shown that the MQ dynamics in adamantane is consistent with that calculated using the cubic lattice and that in Mg(OH)2 with that calculated using the honeycomb and the square lattices. For n-C20H42/d-urea, these 4 lattice models fail to express its result. It is shown that a more realistic model representing the (1)H arrangement of n-C20H42/d-urea can describe the result. The present approach can thus be used to determine (1)H arrangement in solids.

19.
Biochem Biophys Res Commun ; 428(4): 458-62, 2012 Nov 30.
Article in English | MEDLINE | ID: mdl-23131555

ABSTRACT

Alzheimer's disease (AD) is caused by abnormal deposition (fibrillation) of a 42-residue amyloid ß-protein (Aß42) in the brain. During the process of fibrillation, the Aß42 takes the form of protofibrils with strong neurotoxicity, and is thus believed to play a crucial role in the pathogenesis of AD. To elucidate the supramolecular structure of the Aß42 protofibrils, the intermolecular proximity of the Ala-21 residues in the Aß42 protofibrils was analyzed by (13)C-(13)C rotational resonance experiments in the solid state. Unlike the Aß42 fibrils, an intermolecular (13)C-(13)C correlation was not found in the Aß42 protofibrils. This result suggests that the ß-strands of the Aß42 protofibrils are not in an in-register parallel orientation. Aß42 monomers would assemble to form protofibrils with the ß-strand conformation, then transform into fibrils by forming intermolecular parallel ß-sheets.


Subject(s)
Amyloid beta-Peptides/chemistry , Peptide Fragments/chemistry , Carbon Isotopes , Humans , Isotope Labeling , Microscopy, Electron, Transmission , Nuclear Magnetic Resonance, Biomolecular , Protein Structure, Secondary
20.
J Magn Reson ; 224: 48-52, 2012 Nov.
Article in English | MEDLINE | ID: mdl-23036840

ABSTRACT

We explore the possibility for elemental analysis by NMR. To keep the efficiency of the signal acquisition common for all spin species, we propose to fix the frequency and vary the magnetic field to cover the isotopes involved in a sample. We introduce constant-frequency receptivity for quantitative elemental analysis in the frequency-fixed NMR experiment. Field-variable NMR experiments are demonstrated using a cryogen-free superconducting magnet. In addition to elemental analysis in liquid solution, solid-state NMR under magic-angle spinning is also described.


Subject(s)
Algorithms , Isotopes/analysis , Isotopes/chemistry , Magnetic Resonance Spectroscopy/methods , Models, Chemical , Computer Simulation
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