ABSTRACT
To decipher the genetic diversity within the cucurbit genus Citrullus, we generated telomere-to-telomere (T2T) assemblies of 27 distinct genotypes, encompassing all seven Citrullus species. This T2T super-pangenome has expanded the previously published reference genome, T2T-G42, by adding 399.2 Mb and 11,225 genes. Comparative analysis has unveiled gene variants and structural variations (SVs), shedding light on watermelon evolution and domestication processes that enhanced attributes such as bitterness and sugar content while compromising disease resistance. Multidisease-resistant loci from Citrullus amarus and Citrullus mucosospermus were successfully introduced into cultivated Citrullus lanatus. The SVs identified in C. lanatus have not only been inherited from cordophanus but also from C. mucosospermus, suggesting additional ancestors beyond cordophanus in the lineage of cultivated watermelon. Our investigation substantially improves the comprehension of watermelon genome diversity, furnishing comprehensive reference genomes for all Citrullus species. This advancement aids in the exploration and genetic enhancement of watermelon using its wild relatives.
Subject(s)
Citrullus , Genome, Plant , Telomere , Citrullus/genetics , Telomere/genetics , Plant Breeding/methods , Genetic Variation , Phylogeny , Domestication , GenotypeABSTRACT
Wireless sensor network (WSN) underpinning the smart-grid Internet of Things (SG-IoT) has been a popular research topic in recent years due to its great potential for enabling a wide range of important applications. However, the energy consumption (EC) characteristic of sensor nodes is a key factor that affects the operational performance (e.g., lifetime of sensors) and the total cost of ownership of WSNs. In this paper, to find the modulation techniques suitable for WSNs, we investigate the EC characteristic of continuous phase modulation (CPM), which is an attractive modulation scheme candidate for WSNs because of its constant envelope property. We first develop an EC model for the sensor nodes of WSNs by considering the circuits and a typical communication protocol that relies on automatic repeat request (ARQ)-based retransmissions to ensure successful data delivery. Then, we use this model to analyze the EC characteristic of CPM under various configurations of modulation parameters. Furthermore, we compare the EC characteristic of CPM with that of other representative modulation schemes, such as offset quadrature phase-shift keying (OQPSK) and quadrature amplitude modulation (QAM), which are commonly used in communication protocols of WSNs. Our analysis and simulation results provide insights into the EC characteristics of multiple modulation schemes in the context of WSNs; thus, they are beneficial for designing energy-efficient SG-IoT in the beyond-5G (B5G) and the 6G era.
ABSTRACT
MuDR, the founder member of the Mutator superfamily and its MURA transcripts, has been identified as toxic sequences to Escherichia coli (E. coli), which heavily hindered the elucidation of the biochemical features of MURA transposase and confined the broader application of the Mutator system in other organisms. To harness less constrained systems as alternatives, we attempted to clone TED and Jittery, two recently isolated autonomous Mutator-like elements (MULEs) from maize, respectively. Their full-length transcripts and genomic copies are successfully cloned when the incubation time for bacteria to recover from heat shock is extended appropriately prior to plating. However, during their proliferation in E. coli, TED transformed plasmids are unstable, as evidenced by derivatives from which frameshift, deletion mutations, or IS transposon insertions are readily detected. Our results suggest that neither leaky expression of the transposase nor the presence of terminal inverse repeats (TIRs) are responsible for the cloning barriers, which were once ascribed to the presence of the Shine-Dalgarno-like sequence. Instead, the internal sequence of TED (from 1250 to 2845 bp), especially the exons in this region, was the most likely causer. The findings provide novel insights into the property and function of the Mutator superfamily and shed light on the dissection of toxic effects on cloning from MULEs.
Subject(s)
Escherichia coli , Zea mays , Base Sequence , Cloning, Molecular , DNA Transposable Elements/genetics , Escherichia coli/genetics , Plasmids/genetics , Transposases/genetics , Zea mays/geneticsABSTRACT
Watermelon, Citrullus lanatus, is the world's third largest fruit crop. Reference genomes with gaps and a narrow genetic base hinder functional genomics and genetic improvement of watermelon. Here, we report the assembly of a telomere-to-telomere gap-free genome of the elite watermelon inbred line G42 by incorporating high-coverage and accurate long-read sequencing data with multiple assembly strategies. All 11 chromosomes have been assembled into single-contig pseudomolecules without gaps, representing the highest completeness and assembly quality to date. The G42 reference genome is 369 321 829 bp in length and contains 24 205 predicted protein-coding genes, with all 22 telomeres and 11 centromeres characterized. Furthermore, we established a pollen-EMS mutagenesis protocol and obtained over 200 000 M1 seeds from G42 . In a sampling pool, 48 monogenic phenotypic mutations, selected from 223 M1 and 78 M2 mutants with morphological changes, were confirmed. The average mutation density was 1 SNP/1.69 Mb and 1 indel/4.55 Mb per M1 plant and 1 SNP/1.08 Mb and 1 indel/6.25 Mb per M2 plant. Taking advantage of the gap-free G42 genome, 8039 mutations from 32 plants sampled from M1 and M2 families were identified with 100% accuracy, whereas only 25% of the randomly selected mutations identified using the 97103v2 reference genome could be confirmed. Using this library and the gap-free genome, two genes responsible for elongated fruit shape and male sterility (ClMS1) were identified, both caused by a single base change from G to A. The validated gap-free genome and its EMS mutation library provide invaluable resources for functional genomics and genetic improvement of watermelon.
Subject(s)
Citrullus , Chromosome Mapping , Citrullus/genetics , Genetic Association Studies , Genome, Plant/genetics , INDEL Mutation , Plant Breeding , TelomereABSTRACT
To realize the high-efficiency and high-performance manufacture of complex high-web panels, this paper introduced electric pulse current (EPC) into the stress relaxation aging forming process of 2219 aluminum alloy and systematically studied the effects of EPC, stress, and aging time upon the microstructure and properties of 2219 aluminum alloy. It is discovered that: (a) EPC greatly enhanced the mechanical properties after stress relaxation aging and reduced the sensitivity of the yield strength for the initial stress under the aging system of 165 °C/11 h; (b) compared with general aging, stress relaxation aging instead delayed the aging process of 2219 aluminum alloy and greatly increased the peak strength value;