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1.
Circulation ; 120(20): 1961-8, 2009 Nov 17.
Article in English | MEDLINE | ID: mdl-19801505

ABSTRACT

BACKGROUND: The goal of this study was to determine the predictive value of cardiac T2* magnetic resonance for heart failure and arrhythmia in thalassemia major. METHODS AND RESULTS: We analyzed cardiac and liver T2* magnetic resonance and serum ferritin in 652 thalassemia major patients from 21 UK centers with 1442 magnetic resonance scans. The relative risk for heart failure with cardiac T2* values <10 ms (compared with >10 ms) was 160 (95% confidence interval, 39 to 653). Heart failure occurred in 47% of patients within 1 year of a cardiac T2* <6 ms with a relative risk of 270 (95% confidence interval, 64 to 1129). The area under the receiver-operating characteristic curve for predicting heart failure was significantly greater for cardiac T2* (0.948) than for liver T2* (0.589; P<0.001) or serum ferritin (0.629; P<0.001). Cardiac T2* was <10 ms in 98% of scans in patients who developed heart failure. The relative risk for arrhythmia with cardiac T2* values <20 ms (compared with >20 ms) was 4.6 (95% confidence interval, 2.66 to 7.95). Arrhythmia occurred in 14% of patients within 1 year of a cardiac T2* of <6 ms. The area under the receiver-operating characteristic curve for predicting arrhythmia was significantly greater for cardiac T2* (0.747) than for liver T2* (0.514; P<0.001) or serum ferritin (0.518; P<0.001). The cardiac T2* was <20 ms in 83% of scans in patients who developed arrhythmia. CONCLUSIONS: Cardiac T2* magnetic resonance identifies patients at high risk of heart failure and arrhythmia from myocardial siderosis in thalassemia major and is superior to serum ferritin and liver iron. Using cardiac T2* for the early identification and treatment of patients at risk is a logical means of reducing the high burden of cardiac mortality in myocardial siderosis. Clinical Trial Registration- URL: http://www.clinicaltrials.gov. Unique identifier: NCT00520559.


Subject(s)
Arrhythmias, Cardiac/diagnostic imaging , Heart Failure/diagnostic imaging , Magnetic Resonance Imaging , beta-Thalassemia/diagnostic imaging , Adolescent , Adult , Arrhythmias, Cardiac/blood , Arrhythmias, Cardiac/epidemiology , Arrhythmias, Cardiac/etiology , Female , Ferritins/blood , Follow-Up Studies , Heart Failure/blood , Heart Failure/epidemiology , Heart Failure/etiology , Hemosiderosis/blood , Hemosiderosis/diagnostic imaging , Hemosiderosis/epidemiology , Humans , Iron/metabolism , Liver/diagnostic imaging , Liver/metabolism , Male , Predictive Value of Tests , Radiography , Retrospective Studies , Risk Factors , United Kingdom/epidemiology , beta-Thalassemia/blood , beta-Thalassemia/complications , beta-Thalassemia/epidemiology
2.
Nutr Hosp ; 22(5): 590-5, 2007.
Article in Spanish | MEDLINE | ID: mdl-17970544

ABSTRACT

With the objective of studying the nutritional status and its relationship with hospitalization period, a cross-sectional study was done with patients from a private hospital representing a population with a better socioeconomic condition. The anthropometric data of 267 patients, 46% males and 54% females ranging from 20 to 80 years of age, were assessed on the second day of hospitalization. Hospitalization period associated with nutritional status. The data were analyzed by the software Excel and Sigma Stat, using Fisher's exact test and the chi-square test. The studied population presented a body mass index of 25.9 +/- 5.3 and most patients lost weight during hospitalization. The longest hospitalization periods were found among patients with lung diseases (13 days), some being pre-obese (40%) with a small prevalence of undernutrition (4%). The percentage distribution of nutritional status among the groups according to diagnosis was different (P < 0.01) when assessed by the Fisher's exact test and the percentage distribution in weight variation between men and women was different (P < 0.02) when assessed by the chi-square test. When the population was segmented according to age, the percentage distribution of the nutritional status between > 60 and < or = 60 did not present a difference when assessed by the chi-square test. The results of this study show that the nutritional status in some diseases deserves special attention given the greater risk found in these situations, contributing to a longer hospitalization period.


Subject(s)
Inpatients/statistics & numerical data , Length of Stay/statistics & numerical data , Malnutrition/epidemiology , Nutritional Status , Adult , Aged , Aged, 80 and over , Anthropometry , Brazil/epidemiology , Diagnosis-Related Groups , Female , Hospitals, Private/statistics & numerical data , Humans , Male , Middle Aged
3.
Circulation ; 115(14): 1876-84, 2007 Apr 10.
Article in English | MEDLINE | ID: mdl-17372174

ABSTRACT

BACKGROUND: Cardiac complications secondary to iron overload are the leading cause of death in beta-thalassemia major. Approximately two thirds of patients maintained on the parenteral iron chelator deferoxamine have myocardial iron loading. The oral iron chelator deferiprone has been demonstrated to remove myocardial iron, and it has been proposed that in combination with deferoxamine it may have additional effect. METHODS AND RESULTS: Myocardial iron loading was assessed with the use of myocardial T2* cardiovascular magnetic resonance in 167 patients with thalassemia major receiving standard maintenance chelation monotherapy with subcutaneous deferoxamine. Of these patients, 65 with mild to moderate myocardial iron loading (T2* 8 to 20 ms) entered the trial with continuation of subcutaneous deferoxamine and were randomized to receive additional oral placebo (deferoxamine group) or oral deferiprone 75 mg/kg per day (combined group). The primary end point was the change in myocardial T2* over 12 months. Secondary end points of endothelial function (flow-mediated dilatation of the brachial artery) and cardiac function were also measured with cardiovascular magnetic resonance. There were significant improvements in the combined treatment group compared with the deferoxamine group in myocardial T2* (ratio of change in geometric means 1.50 versus 1.24; P=0.02), absolute left ventricular ejection fraction (2.6% versus 0.6%; P=0.05), and absolute endothelial function (8.8% versus 3.3%; P=0.02). There was also a significantly greater improvement in serum ferritin in the combined group (-976 versus -233 microg/L; P<0.001). CONCLUSIONS: In comparison to the standard chelation monotherapy of deferoxamine, combination treatment with additional deferiprone reduced myocardial iron and improved the ejection fraction and endothelial function in thalassemia major patients with mild to moderate cardiac iron loading.


Subject(s)
Chelation Therapy , Deferoxamine/therapeutic use , Iron Chelating Agents/therapeutic use , Iron Overload/drug therapy , Iron/analysis , Myocardium/chemistry , Pyridones/therapeutic use , beta-Thalassemia/drug therapy , Adult , Agranulocytosis/chemically induced , Arthralgia/chemically induced , Deferiprone , Deferoxamine/administration & dosage , Deferoxamine/adverse effects , Double-Blind Method , Drug Therapy, Combination , Endothelium, Vascular/physiopathology , Female , Ferritins/blood , Gastrointestinal Diseases/chemically induced , Heart Failure/prevention & control , Humans , Iron Chelating Agents/administration & dosage , Iron Chelating Agents/adverse effects , Iron Overload/etiology , Liver/chemistry , Magnetic Resonance Spectroscopy , Male , Neutropenia/chemically induced , Pyridones/administration & dosage , Pyridones/adverse effects , Stroke Volume , beta-Thalassemia/complications
5.
J Cardiovasc Magn Reson ; 8(3): 543-7, 2006.
Article in English | MEDLINE | ID: mdl-16755844

ABSTRACT

BACKGROUND: Heart failure secondary to myocardial iron loading remains the leading cause of death in thalassemia major (TM). We used cardiovascular magnetic resonance (CMR) to assess the prevalence of myocardial iron overload and ventricular dysfunction in a large cohort of TM patients maintained on conventional chelation treatment with deferoxamine. METHODS: A mobile CMR scanner was transported from London, UK, to Sardinia, Italy where 167 TM patients were assessed for myocardial iron loading, B-natriuretic peptide (BNP), and ferritin. In patients with myocardial iron loading CMR assessments of ventricular function were also made. RESULTS: Myocardial iron loading (T2* < 20 ms) was present in 108 (65%) patients, which was severe (T2* < 8 ms) in 22 (13%). Impaired (< 56%) left ventricular (LV) ejection fraction (EF) was present in 5%, 20% and 62% of patients with mild, moderate or severe iron loading. Increasing myocardial iron was related to impaired LVEF (Rs = 0.57, p < 0.001), weakly related to serum ferritin (Rs = -0.34, p < 0.001), and not related to liver iron (Rs = 0.11, p = 0.26). BNP was weakly related to myocardial iron (Rs = -0.35, p < 0.001) and was abnormal in only 5 patients. CONCLUSIONS: Myocardial siderosis was found in two-thirds of thalassemia major patients on maintenance deferoxamine treatment. This was combined with a high prevalence of impaired LV function, the severity of which tracked the severity of iron deposition. BNP was not useful to assess myocardial siderosis.


Subject(s)
Cardiomyopathies/diagnosis , Deferoxamine/therapeutic use , Iron Overload/diagnosis , Magnetic Resonance Imaging/methods , Myocardium/chemistry , Siderophores/therapeutic use , beta-Thalassemia/drug therapy , Cardiomyopathies/etiology , Chi-Square Distribution , Female , Ferritins/blood , Humans , Iron Overload/epidemiology , Italy/epidemiology , Male , Myocardium/metabolism , Natriuretic Peptide, Brain/blood , Prevalence , Ventricular Dysfunction, Left/diagnosis , Ventricular Dysfunction, Left/epidemiology
6.
Heart ; 89(10): 1132-3, 2003 Oct.
Article in English | MEDLINE | ID: mdl-12975396

ABSTRACT

During coronary angiography knotting of a coronary catheter is a recognised complication. It commonly results through excessive manipulation of a catheter in an attempt to engage the right coronary artery. Although simple manoeuvres of the catheter can often result in resolution of a kink, tighter knots may not be amenable to such measures. There is, however, little published material regarding its best management. We present five cases of cardiac catheterisation complicated by catheter knotting and present a novel percutaneous technique for their reduction.


Subject(s)
Cardiac Catheterization/methods , Coronary Angiography/instrumentation , Equipment Failure , Aged , Female , Humans , Male , Middle Aged
7.
Postgrad Med J ; 79(933): 412-3, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12897222

ABSTRACT

A 31-year-old white man was referred for investigation of a persistent sinus tachycardia. His only significant past medical history was of chronic schizophrenia for which he had been taking clozapine for six years. An electrocardiogram demonstrated sinus tachycardia, voltage criteria for left ventricular hypertrophy, and a prolonged QTc. Echocardiographic findings were consistent with a dilated cardiomyopathy. Serious cardiac complications of clozapine use are rare but have been reported previously. It is important to note that sinus tachycardia may be the only obvious clinical sign, and that complications can manifest months or even years (as in this case) after starting the drug. Patients on clozapine should be informed of potential cardiac symptoms and doctors should maintain a high degree of clinical suspicion throughout the duration of treatment.


Subject(s)
Antipsychotic Agents/adverse effects , Cardiomyopathy, Dilated/chemically induced , Clozapine/adverse effects , Adult , Humans , Male , Schizophrenia/drug therapy , Tachycardia/chemically induced
8.
Clin Lab Haematol ; 24(6): 337-41, 2002 Dec.
Article in English | MEDLINE | ID: mdl-12452813

ABSTRACT

Blood is a valuable clinical sample for high-throughput analysis of gene expression and is likely to become more popular as a diagnostic tool and as a predictive measure of disease progression and drug responsiveness. Gene expression data from blood that has been stored at ambient temperature for greater than 1 h vs. blood samples that have been lysed immediately post-collection shows dramatic changes in relative gene expression for a number of cytokines, chemokines, and transcription factors. Results indicate significant changes in the relative expression of several genes, many of which were either up-regulated or down-regulated, because of storage at ambient temperature: (1) In only 4 h of storage at ambient temperature, greater than 10-fold increases in relative gene expression were observed for interleukin-8 (IL-8), c-myc, and c-fos; (2) Up-regulation of IL-8, a chemokine that mediates inflammatory cell migration, took place only 1-h after collection and increased nearly 100-fold by 4 h; (3) Down-regulation of several anti-inflammatory genes was observed for blood stored at ambient temperature; and (4) A general trend toward selective enhancement of inflammatory responses was observed, mediated by possible mRNA transcription and turnover. These results validate the need for the rapid lysis of whole blood after removal from the source.


Subject(s)
Blood Preservation/methods , Blood Proteins/biosynthesis , Gene Expression Regulation , Leukocytes/metabolism , Blood Proteins/genetics , Chemokines/biosynthesis , Chemokines/genetics , Cryopreservation , Cytokines/biosynthesis , Cytokines/genetics , Gene Expression Profiling , Genes, fos , Genes, myc , Humans , Male , Middle Aged , Proto-Oncogene Proteins c-fos/biosynthesis , Proto-Oncogene Proteins c-myc/biosynthesis , RNA, Messenger/blood , Temperature , Transcription Factors/biosynthesis , Transcription Factors/genetics
9.
J Clin Microbiol ; 38(4): 1628-31, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10747154

ABSTRACT

rRNA-based molecular phylogenetic techniques were used to identify the bacterial species present in the ear fluid from a female patient with otitis externa. We report the identification of Staphylococcus intermedius from the patient and a possible route of transmission. Analysis of 16S ribosomal DNA restriction fragment length polymorphisms indicated that the dominant species present was S. intermedius. A pet dog owned by the patient also was tested and found to harbor S. intermedius. In humans, the disease is rare and considered a zoonosis. Previously, S. intermedius has been associated with dog bite wounds, catheter-related injuries, and surgery. This study represents the first reported case of a noninvasive infection with S. intermedius.


Subject(s)
Dog Diseases/transmission , Otitis Externa/microbiology , Phylogeny , Staphylococcal Infections/transmission , Staphylococcus/classification , Zoonoses , Adult , Animals , DNA, Bacterial/analysis , DNA, Bacterial/genetics , DNA, Ribosomal/analysis , DNA, Ribosomal/genetics , Dog Diseases/microbiology , Dogs , Female , Humans , Molecular Sequence Data , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Staphylococcal Infections/microbiology , Staphylococcal Infections/veterinary , Staphylococcus/genetics , Staphylococcus/isolation & purification
10.
J Cell Physiol ; 182(3): 359-65, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10653602

ABSTRACT

Nitric oxide (NO) synthesized by endothelial cell nitric oxide synthase (eNOS) elicits vasodilation of resistance-sized coronary microvessels. Since coronary blood flow increases during hypoxia, we tested the hypotheses that: (1) hypoxia results in increased blood flow through increased NO production mediated by the upregulation of both eNOS mRNA and protein and (2) the regulation of NO production in response to hypoxia differs in microvascular endothelial cells and nonresistance, epicardial endothelial cells. Monocultures of vascular endothelium from resistance (approximately 100 micro) and nonresistance epicardial arteries were established and characterized. Nitric oxide was quantitated using a chemiluminescence method. Hypoxia (pO(2) = 10 mmHg) significantly increased NO production in both cell lines, with less NO produced in microvascular endothelium. Western blots demonstrated that hypoxia caused a time-dependent increase in eNOS protein in both lines, with an average 2.5-fold increase in nonresistance, epicardial endothelial cells compared to an average 1.7-fold increase in protein from microvascular endothelium. Total mRNA recovery increased 2.4 +/- 0.6-fold within 30 min of hypoxia in nonresistance, epicardial endothelial cells with no increase in microvascular endothelial cells. Although hypoxia increased NO production in both populations of endothelial cells, the increase in NO production and eNOS protein in microvascular endothelium was less compared to nonresistance, epicardial endothelial cells. Furthermore, there was no significant upregulation of total mRNA for eNOS in microvascular endothelium. The data indicate that increased NO production in microvascular endothelium during hypoxia may be through translational or posttranslational modifications of the enzyme, whereas transcriptional upregulation may account for the increased NO production in nonresistance, epicardial endothelial cells. Oxygen-sensitive response mechanisms that modulate NO production may be different in endothelium from different coronary artery vascular beds.


Subject(s)
Endothelium, Vascular/cytology , Endothelium, Vascular/enzymology , Hypoxia/metabolism , Myocardial Ischemia/metabolism , Nitric Oxide/metabolism , Animals , Blotting, Northern , Cell Line , Coronary Vessels/cytology , Coronary Vessels/enzymology , Gene Expression Regulation, Enzymologic , Microcirculation/physiology , Nitric Oxide Synthase/genetics , Nitric Oxide Synthase/metabolism , Nitric Oxide Synthase Type III , Pericardium , RNA, Messenger/metabolism , Swine
11.
Nitric Oxide ; 3(5): 359-65, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10534439

ABSTRACT

Herbal medicines are increasingly being utilized to treat a wide variety of disease processes. Gypenosides are triterpenoid saponins contained in an extract from Gynostemma pentaphyllum and are reported to be effective in the treatment of cardiovascular diseases; however, the mechanism underlying the therapeutic effect is not known. We tested the hypothesis that gypenosides extracted from G. pentaphyllum elicit vasorelaxation through the direct release of endothelium-derived nitric oxide. Nitric oxide production in bovine aortic endothelial cells grown under standard tissue culture conditions was quantitated using a chemiluminescence method. Arterial vasomotion was assayed using isolated porcine coronary artery rings under standard isometric recording conditions. The extract of G. pentaphyllum at 0.1-100 microg/ml elicited concentration-dependent vasorelaxation of porcine coronary rings that was antagonized by the nitric oxide synthase inhibitor N(G)-nitro-l-arginine methyl ester. Indomethacin had no significant effect on G. pentaphyllum-induced relaxation. The G. pentaphyllum extract elicited a concentration-dependent increase in nitric oxide production from cultured bovine aortic endothelial cells. At the concentrations utilized, there was no morphological evidence for cellular toxicity. These results demonstrate that extracts of G. pentaphyllum directly stimulate nitric oxide release, but not prostanoid production. Nitric oxide production in response to gypenosides may be one mechanism whereby this herbal medicine elicits its therapeutic effects.


Subject(s)
Drugs, Chinese Herbal/metabolism , Nitric Oxide/metabolism , Plant Extracts/metabolism , Saponins/metabolism , Terpenes/metabolism , Vasodilation/drug effects , Animals , Aorta/drug effects , Cattle , Cells, Cultured , Coronary Vessels/drug effects , Endothelium, Vascular/cytology , Endothelium, Vascular/drug effects , Enzyme Inhibitors/pharmacology , In Vitro Techniques , NG-Nitroarginine Methyl Ester/pharmacology , Nitric Oxide Synthase/antagonists & inhibitors , Swine
12.
Neural Comput ; 11(5): 1183-98, 1999 Jul 01.
Article in English | MEDLINE | ID: mdl-10418162

ABSTRACT

We investigate a class of hierarchical mixtures-of-experts (HME) models where generalized linear models with nonlinear mean functions of the form psi (alpha + xT beta) are mixed. Here psi (.) is the inverse link function. It is shown that mixtures of such mean functions can approximate a class of smooth functions of the form psi (h(x)), where h(.) epsilon W2;K infinity (a Sobolev class over [0, 1]s), as the number of experts m in the network increases. An upper bound of the approximation rate is given as O(m-2/s) in Lp norm. This rate can be achieved within the family of HME structures with no more than s-layers, where s is the dimension of the predictor x.


Subject(s)
Models, Theoretical , Nerve Net , Algorithms
13.
Thromb Haemost ; 81(4): 638-42, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10235453

ABSTRACT

Moderate alcohol consumption has been shown to reduce the risk of ischemic heart disease potentially through its effect on specific endothelial-derived compounds. We tested the hypothesis that ethanol increases the expression of endothelial nitric oxide synthase (eNOS) and nitric oxide (NO) production in bovine aortic endothelial cells (BAEC). Primary cultures of BAEC grown to confluence under standard conditions were treated 3-6 h with 0.1% ethanol in the presence of indomethacin. Ethanol induced a significant increase in both basal and stimulated NO production as determined by chemiluminescence method. This effect was accompanied by a rapid increase of eNOS protein and mRNA expression levels. eNOS mRNA increased two-fold within 3 h and gradually declined, but the increased levels of mRNA persisted for >24 h. A similar increase of eNOS expression was observed in human umbilical endothelial cells exposed to ethanol. These results demonstrate that ethanol augments both basal and stimulated NO production and that this effect is associated with increased eNOS protein and mRNA expression levels. The data are consistent with the hypothesis that the reduced incidence of ischemic heart disease associated with alcohol may be related, at least in part, to the modulation of vascular endothelial cell production of NO.


Subject(s)
Endothelium, Vascular/cytology , Endothelium, Vascular/metabolism , Ethanol/pharmacology , Nitric Oxide Synthase/genetics , Nitric Oxide/biosynthesis , Animals , Blotting, Northern , Cattle , Cells, Cultured , Gene Expression/drug effects , Humans , Infant, Newborn , Nucleic Acid Hybridization , RNA, Messenger/metabolism , Time Factors
14.
J Clin Microbiol ; 37(6): 1863-70, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10325338

ABSTRACT

The etiology of chronic prostatitis syndromes in men is controversial, particularly when positive cultures for established uropathogens are lacking. Although identification of bacteria in prostatic fluid has relied on cultivation and microscopy, most microorganisms in the environment, including some human pathogens, are resistant to cultivation. We report here on an rRNA-based molecular phylogenetic approach to the identification of bacteria in prostate fluid from prostatitis patients. Positive bacterial signals were seen for 65% of patients with chronic prostatitis overall. Seven of 11 patients with bacterial signals but none of 6 patients without bacterial signals were cured with antibiotic-based therapy. Results indicate the occurrence in the prostate fluid of a wide spectrum of bacterial species representing several genera. Most rRNA genes were closely related to those of species belonging to the genera Corynebacterium, Staphylococcus, Peptostreptococcus, Streptococcus, and Escherichia. Unexpectedly, a wide diversity of Corynebacterium species was found in high proportion compared to the proportions of other bacterial species found. A subset of these 16S rRNA sequences represent those of undescribed species on the basis of their positions in phylogenetic trees. These uncharacterized organisms were not detected in control samples, suggesting that the organisms have a role in the disease or are the consequence of the disease. These studies show that microorganisms associated with prostatitis generally occur as complex microbial communities that differ between patients. The results also indicate that microbial communities distinct from those associated with prostatitis may occur at low levels in normal prostatic fluid.


Subject(s)
Bacterial Infections/classification , Corynebacterium/isolation & purification , Phylogeny , Prostatitis/microbiology , RNA, Ribosomal, 16S/genetics , Corynebacterium/classification , Corynebacterium/genetics , DNA, Ribosomal/genetics , Escherichia coli/isolation & purification , Humans , Male , Peptostreptococcus/genetics , Peptostreptococcus/isolation & purification , RNA, Bacterial/genetics , RNA, Bacterial/isolation & purification , RNA, Ribosomal, 16S/isolation & purification , Staphylococcus/genetics , Staphylococcus/isolation & purification , Streptococcus/isolation & purification
15.
Neural Netw ; 12(9): 1253-1258, 1999 Nov.
Article in English | MEDLINE | ID: mdl-12662630

ABSTRACT

In mixtures-of-experts (ME) models, "experts" of generalized linear models are combined, according to a set of local weights called the "gating function". The invariant transformations of the ME probability density functions include the permutations of the expert labels and the translations of the parameters in the gating functions. Under certain conditions, we show that the ME systems are identifiable if the experts are ordered and the gating parameters are initialized. The conditions are validated for Poisson, gamma, normal and binomial experts.

16.
Biometrics ; 55(4): 1291-4, 1999 Dec.
Article in English | MEDLINE | ID: mdl-11315086

ABSTRACT

This article presents an algorithm for small-sample conditional confidence regions for two or more parameters for any discrete regression model in the generalized linear interactive model family. Regions are constructed by careful inversion of conditional hypothesis tests. This method presupposes the use of approximate or exact techniques for enumerating the sample space for some components of the vector of sufficient statistics conditional on other components. Such enumeration may be performed exactly or by exact or approximate Monte Carlo, including the algorithms of Kolassa and Tanner (1994, Journal of the American Statistical Association 89, 697-702; 1999, Biometrics 55, 246-251). This method also assumes that one can compute certain conditional probabilities for a fixed value of the parameter vector. Because of a property of exponential families, one can use this set of conditional probabilities to directly compute the conditional probabilities associated with any other value of the vector of the parameters of interest. This observation dramatically reduces the computational effort required to invert the hypothesis test to obtain the confidence region. To construct a region with confidence level 1 - alpha, the algorithm begins with a grid of values for the parameters of interest. For each parameter vector on the grid (corresponding to the current null hypothesis), one transforms the initial set of conditional probabilities using exponential tilting and then calculates the p value for this current null hypothesis. The confidence region is the set of parameter values for which the p value is at least alpha.


Subject(s)
Algorithms , Biometry , Confidence Intervals , Disease-Free Survival , Female , Humans , Linear Models , Male , Monte Carlo Method , Osteosarcoma/therapy , Regression Analysis , Sample Size
17.
Biometrics ; 55(1): 246-51, 1999 Mar.
Article in English | MEDLINE | ID: mdl-11318162

ABSTRACT

This article presents an algorithm for approximate frequentist conditional inference on two or more parameters for any regression model in the Generalized Linear Model (GLIM) family. We thereby extend highly accurate inference beyond the cases of logistic regression and contingency tables implimented in commercially available software. The method makes use of the double saddlepoint approximations of Skovgaard (1987, Journal of Applied Probability 24, 875-887) and Jensen (1992, Biometrika 79, 693-703) to the conditional cumulative distribution function of a sufficient statistic given the remaining sufficient statistics. This approximation is then used in conjunction with noniterative Monte Carlo methods to generate a sample from a distribution that approximates the joint distribution of the sufficient statistics associated with the parameters of interest conditional on the observed values of the sufficient statistics associated with the nuisance parameters. This algorithm is an alternate approach to that presented by Kolassa and Tanner (1994, Journal of the American Statistical Association 89, 697-702), in which a Markov chain is generated whose equilibrium distribution under certain regularity conditions approximates the joint distribution of interest. In Kolassa and Tanner (1994), the Gibbs sampler was used in conjunction with these univariate conditional distribution function approximations. The method of this paper does not require the construction and simulation of a Markov chain, thus avoiding the need to develop regularity conditions under which the algorithm converges and the need for the data analyst to check convergence of the particular chain. Examples involving logistic and truncated Poisson regression are presented.


Subject(s)
Algorithms , Biometry , Monte Carlo Method , Humans , Linear Models , Logistic Models , Poisson Distribution , Randomized Controlled Trials as Topic/statistics & numerical data , Urinary Bladder Neoplasms/therapy
18.
J Radiat Res ; 40 Suppl: 128-37, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10805001

ABSTRACT

Following the hormonal treatment of rats with high prolactin levels and glucocorticoid deficiency (Prl+/Glc-) for 48 days (Day +48), total recoverable mammary DNA was increased by more than sevenfold, tritiated thymidine uptake by nearly fourfold, and total mammary clonogens by about fivefold. Irradiation with 4, 40, and 80 cGy X-rays on Day +48 increased total mammary carcinomas per rat-day-at-risk linearly with dose, and 40 and 80 cGy significantly decreased first carcinoma latency. A dose of 40 cGy X-rays before hormone treatment (Day -1) yielded tumor latencies and frequencies insignificantly different from unirradiated controls but significantly different from those when the dose was given on Day +48. Total carcinomas per rat-day-at-risk were fitted better by a function of dose to the power 0.4 than by a linear function after exposure to 1, 10. and 20 cGy fission neutrons, and 10 and 20 cGy significantly shortened the time to appearance of the first cancer. In contrast to results with X-rays, 10 cGy neutrons on Day -1 yielded tumor frequencies and latencies insignificantly different from 10 cGy neutrons on Day +48. The carcinogenic action of X-rays, but not of neutrons, was thus influenced by total clonogen numbers and/or proliferation rates.


Subject(s)
Mammary Glands, Animal/cytology , Mammary Glands, Animal/radiation effects , Mammary Neoplasms, Experimental/etiology , Neoplasms, Radiation-Induced/etiology , Animals , Clone Cells/radiation effects , Female , Glucocorticoids/deficiency , Kinetics , Neutrons/adverse effects , Prolactin/metabolism , Rats , Rats, Inbred F344 , Relative Biological Effectiveness
19.
Basic Res Cardiol ; 94(6): 445-53, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10651156

ABSTRACT

Endothelin, a potent vasoconstrictor, mitogen, and stimulant of collagen synthesis, is reported to be increased after vascular injury. We tested the hypothesis that tissue endothelin levels and its receptor expression are increased following double balloon injury in a porcine coronary artery model of restenosis. Male miniature swine maintained on a hyperlipidemic diet underwent oversized balloon injury to both the proximal right coronary artery and left circumflex coronary artery. Two weeks following the initial injury, the arteries were repeat injured at the same site and subsequently harvested four weeks later. Proximal balloon injured (BI) and distal non-balloon-injured (NBI) segments from the same artery were collected. Tissue endothelin-1 (ET-1) levels were measured by ELISA. Endothelin receptors were assayed by radioligand binding using 125I-ET-1 and also immunolabeling. Tissue endothelin levels were 4-5 fold greater in BI arteries as compared to NBI. There was a significant increase in tissue ET-1 levels and endothelin receptor binding following double balloon injury relative to NBI control arteries. Western blots showed an increased expression of ET(A) receptor protein in injured vessels compared to non-injured arteries. Immunohistochemistry using an ET(A) receptor specific antibody confirmed increased receptor density following balloon injury. Thus, in an in vivo double balloon injury model for coronary artery restenosis, the response to vascular injury is increased tissue ET-1 content and upregulation of ET(A) receptor density associated with increased receptor protein.


Subject(s)
Coronary Disease/metabolism , Endothelin-1/biosynthesis , Animals , Catheterization , Coronary Disease/pathology , Coronary Vessels/metabolism , Coronary Vessels/pathology , Enzyme-Linked Immunosorbent Assay , Male , Swine , Up-Regulation
20.
Appl Environ Microbiol ; 64(8): 3110-3, 1998 Aug.
Article in English | MEDLINE | ID: mdl-9687486

ABSTRACT

Phylogenetic analysis of 16S ribosomal DNA (rDNA) clones obtained by PCR from uncultured bacteria inhabiting a wide range of environments has increased our knowledge of bacterial diversity. One possible problem in the assessment of bacterial diversity based on sequence information is that PCR is exquisitely sensitive to contaminating 16S rDNA. This raises the possibility that some putative environmental rRNA sequences in fact correspond to contaminant sequences. To document potential contaminants, we cloned and sequenced PCR-amplified 16S rDNA fragments obtained at low levels in the absence of added template DNA. 16S rDNA sequences closely related to the genera Duganella (formerly Zoogloea), Acinetobacter, Stenotrophomonas, Escherichia, Leptothrix, and Herbaspirillum were identified in contaminant libraries and in clone libraries from diverse, generally low-biomass habitats. The rRNA sequences detected possibly are common contaminants in reagents used to prepare genomic DNA. Consequently, their detection in processed environmental samples may not reflect environmentally relevant organisms.


Subject(s)
Bacteria/genetics , DNA, Ribosomal/analysis , Environmental Microbiology , Polymerase Chain Reaction , Animals , Bacteria/isolation & purification , Base Sequence , Cloning, Molecular , DNA, Bacterial/analysis , Evolution, Molecular , Humans , Molecular Sequence Data , RNA, Ribosomal, 16S/genetics
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