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1.
Nature ; 502(7473): 677-80, 2013 Oct 31.
Article in English | MEDLINE | ID: mdl-24153189

ABSTRACT

Globally, reef-building corals are the most prolific producers of dimethylsulphoniopropionate (DMSP), a central molecule in the marine sulphur cycle and precursor of the climate-active gas dimethylsulphide. At present, DMSP production by corals is attributed entirely to their algal endosymbiont, Symbiodinium. Combining chemical, genomic and molecular approaches, we show that coral juveniles produce DMSP in the absence of algal symbionts. DMSP levels increased up to 54% over time in newly settled coral juveniles lacking algal endosymbionts, and further increases, up to 76%, were recorded when juveniles were subjected to thermal stress. We uncovered coral orthologues of two algal genes recently identified in DMSP biosynthesis, strongly indicating that corals possess the enzymatic machinery necessary for DMSP production. Our results overturn the paradigm that photosynthetic organisms are the sole biological source of DMSP, and highlight the double jeopardy represented by worldwide declining coral cover, as the potential to alleviate thermal stress through coral-produced DMSP declines correspondingly.


Subject(s)
Anthozoa/physiology , Stress, Physiological , Sulfonium Compounds/metabolism , Temperature , Acrylates/analysis , Acrylates/metabolism , Algal Proteins/genetics , Animals , Anthozoa/genetics , Anthozoa/metabolism , Climate Change , Photosynthesis , Secondary Metabolism , Symbiosis , Time Factors
2.
Mar Drugs ; 10(8): 1619-1630, 2012 Aug.
Article in English | MEDLINE | ID: mdl-23015765

ABSTRACT

The methanol extract of a Sinularia sp., collected from Bowden Reef, Queensland, Australia, yielded ten natural products. These included the new nitrogenous diterpene (4R*,5R*,9S*,10R*,11Z)-4-methoxy-9-((dimethylamino)-methyl)-12,15-epoxy-11(13)-en-decahydronaphthalen-16-ol (1), and the new lobane, (1R*,2R*,4S*,15E)-loba-8,10,13(14),15(16)-tetraen-17,18-diol-17-acetate (2). Also isolated were two known cembranes, sarcophytol-B and (1E,3E,7E)-11,12-epoxycembratrien-15-ol, and six known lobanes, loba-8,10,13(15)-triene-16,17,18-triol, 14,18-epoxyloba-8,10,13(15)-trien-17-ol, lobatrientriol, lobatrienolide, 14,17-epoxyloba-8,10,13(15)-trien-18-ol-18-acetate and (17R)-loba-8,10,13(15)-trien-17,18-diol. Structures of the new compounds were elucidated through interpretation of spectra obtained after extensive NMR and MS investigations and comparison with literature values. The tumour cell growth inhibition potential of 1 and 2 along with loba-8,10,13(15)-triene-16,17,18-triol, 14,17-epoxyloba-8,10,13(15)-trien-18-ol-18-acetate, lobatrienolide, (1E,3E,7E)-11,12-epoxycembratrien-15-ol and sarcophytol-B were assessed against three human tumour cell lines (SF-268, MCF-7 and H460). The lobanes and cembranes tested demonstrated 50% growth inhibition in the range 6.8-18.5 µM, with no selectivity, whilst 1 was less active (GI50 70-175 µM).


Subject(s)
Anthozoa/chemistry , Antineoplastic Agents/pharmacology , Diterpenes/pharmacology , Neoplasms/drug therapy , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/isolation & purification , Cell Line, Tumor , Coral Reefs , Diterpenes/chemistry , Diterpenes/isolation & purification , Humans , Magnetic Resonance Spectroscopy , Mass Spectrometry , Neoplasms/pathology , Queensland
3.
Molecules ; 17(3): 2929-38, 2012 Mar 08.
Article in English | MEDLINE | ID: mdl-22402763

ABSTRACT

The methanol extract of an assemblage of Halimeda stuposa and a Dictyota sp., yielded three natural products characteristic of Dictyota sp., and one of Halimeda sp. These included the xenicane diterpene 4-hydroxydictyolactone (1), and the diterpenes dictyol E (2), 8a,11-dihydroxypachydictyol A (3) and indole-3-carboxaldehyde (4). A minor revision of 1 and new spectroscopic data for 1 and 2 are provided, along with associated anti-cancer activities of compounds.


Subject(s)
Antineoplastic Agents/chemistry , Chlorophyta/chemistry , Diterpenes/chemistry , Plant Extracts/chemistry , Animals , Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , CHO Cells , Cell Line, Tumor , Cricetinae , Diterpenes/isolation & purification , Diterpenes/pharmacology , Drug Screening Assays, Antitumor , Euryarchaeota/chemistry , Humans , Indoles/chemistry , Indoles/isolation & purification , Indoles/pharmacology , Magnetic Resonance Spectroscopy , Molecular Conformation , Plant Extracts/isolation & purification , Plant Extracts/pharmacology , Solvents/chemistry
4.
Mar Drugs ; 9(11): 2469-2478, 2011.
Article in English | MEDLINE | ID: mdl-22163196

ABSTRACT

While investigating the cytotoxic activity of the methanol extract of an Australian marine sponge Stelletta sp. (Demospongiae), a new diketopiperazine, cyclo-(4-S-hydroxy-R-proline-R-isoleucine) (1), was isolated together with the known bengamides; A (2), F (3), N (4), Y (5), and bengazoles; Z (6), C(4) (7) and C(6) (8). The isolation and structure elucidation of the diketopiperazine (1), together with the activity of 1-8 against a panel of human and mammalian cell lines are discussed.


Subject(s)
Azepines/pharmacology , Diketopiperazines/pharmacology , Oxazoles/pharmacology , Peptides, Cyclic/pharmacology , Porifera/chemistry , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , Australia , Azepines/chemistry , Azepines/isolation & purification , Cell Line , Cell Line, Tumor , Diketopiperazines/chemistry , Diketopiperazines/isolation & purification , Humans , Neoplasms/drug therapy , Neoplasms/pathology , Oxazoles/chemistry , Oxazoles/isolation & purification , Peptides, Cyclic/chemistry , Peptides, Cyclic/isolation & purification
5.
PLoS One ; 6(4): e19082, 2011 Apr 29.
Article in English | MEDLINE | ID: mdl-21559509

ABSTRACT

The induction of larval attachment and metamorphosis of benthic marine invertebrates is widely considered to rely on habitat specific cues. While microbial biofilms on marine hard substrates have received considerable attention as specific signals for a wide and phylogenetically diverse array of marine invertebrates, the presumed chemical settlement signals produced by the bacteria have to date not been characterized. Here we isolated and fully characterized the first chemical signal from bacteria that induced larval metamorphosis of acroporid coral larvae (Acropora millepora). The metamorphic cue was identified as tetrabromopyrrole (TBP) in four bacterial Pseudoalteromonas strains among a culture library of 225 isolates obtained from the crustose coralline algae Neogoniolithon fosliei and Hydrolithon onkodes. Coral planulae transformed into fully developed polyps within 6 h, but only a small proportion of these polyps attached to the substratum. The biofilm cell density of the four bacterial strains had no influence on the ratio of attached vs. non-attached polyps. Larval bioassays with ethanolic extracts of the bacterial isolates, as well as synthetic TBP resulted in consistent responses of coral planulae to various doses of TBP. The lowest bacterial density of one of the Pseudoalteromonas strains which induced metamorphosis was 7,000 cells mm(-2) in laboratory assays, which is on the order of 0.1-1% of the total numbers of bacteria typically found on such surfaces. These results, in which an actual cue from bacteria has been characterized for the first time, contribute significantly towards understanding the complex process of acroporid coral larval settlement mediated through epibiotic microbial biofilms on crustose coralline algae.


Subject(s)
Anthozoa/microbiology , Anthozoa/physiology , Larva/physiology , Metamorphosis, Biological , Pseudoalteromonas/metabolism , Pyrroles/metabolism , Animals , Bacteria/metabolism , Biofilms , Biological Assay/methods , Genetic Techniques , Models, Biological , Models, Statistical , Phylogeny , RNA, Ribosomal, 16S/metabolism , Time Factors
6.
J Nat Prod ; 74(5): 1335-8, 2011 May 27.
Article in English | MEDLINE | ID: mdl-21513294

ABSTRACT

Three new merosesquiterpenoids, metachromins U, V, and W (1-3), were isolated from a specimen of the marine sponge Thorecta reticulata collected off Hunter Island, Tasmania, Australia. Structures of the new compounds were elucidated through extensive NMR investigations and comparison with literature values. The cytotoxicities of 1-3 were assessed against a panel of human tumor cell lines (SF-268, H460, MCF-7, and HT-29) and a mammalian cell line (CHO-K1). All compounds were found to have 50% growth inhibition activities in the range 2.1-130 µM, with 2 being the most active (GI50 2.1-10 µM).


Subject(s)
Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , Porifera/chemistry , Sesquiterpenes/isolation & purification , Sesquiterpenes/pharmacology , Animals , Antineoplastic Agents/chemistry , Drug Screening Assays, Antitumor , HT29 Cells , Humans , Marine Biology , Molecular Structure , Nuclear Magnetic Resonance, Biomolecular , Sesquiterpenes/chemistry
7.
J Nat Prod ; 74(4): 739-43, 2011 Apr 25.
Article in English | MEDLINE | ID: mdl-21348445

ABSTRACT

Bioassay-guided fractionation of extracts of the brown alga Sporochnus comosus led to the isolation of five new compounds, comosusols A-D (3-6) and comosone A (7). The structures of all isolated compounds were elucidated using standard one- and two-dimensional NMR techniques, as well as comparison with literature values. The cytotoxic activity of all compounds was investigated against a panel of human tumor and mammalian cell lines. These assays found eight of the nine compounds had GI(50) values in the 8-63 µM range.


Subject(s)
Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , Cyclohexanones/isolation & purification , Cyclohexanones/pharmacology , Phaeophyceae/chemistry , Phenols/isolation & purification , Phenols/pharmacology , Quinones/isolation & purification , Quinones/pharmacology , Antineoplastic Agents/chemistry , Australia , Cyclohexanones/chemistry , Drug Screening Assays, Antitumor , Humans , Molecular Structure , Nuclear Magnetic Resonance, Biomolecular , Phenols/chemistry , Quinones/chemistry
8.
J Nat Prod ; 74(1): 65-8, 2011 Jan 28.
Article in English | MEDLINE | ID: mdl-21155589

ABSTRACT

A new sesquiterpene benzoxazole, nakijinol B (3), its acetylated derivative, nakijinol B diacetate (6), and two new sesquiterpene quinones, smenospongines B (4) and C (5), were isolated from the methanol extract of the marine sponge Dactylospongia elegans. Also isolated were the known compounds dactyloquinone B and a 1:1 mixture of ilimaquinone and 5-epi-ilimaquinone. Their structures were determined on the basis of spectroscopic analyses and comparison with literature data. The isolated compounds were assessed for their cytotoxicity against a panel of human tumor cell lines (SF-268, H460, MCF-7, and HT-29) and a normal mammalian cell line (CHO-K1). All compounds were found to have activities in the range 1.8-46 µM and lacked selectivity for tumor versus normal cell lines.


Subject(s)
Antineoplastic Agents/isolation & purification , Benzoxazoles/isolation & purification , Porifera/chemistry , Quinones/isolation & purification , Sesquiterpenes/isolation & purification , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Benzoxazoles/chemistry , Benzoxazoles/pharmacology , Cells, Cultured/drug effects , Drug Screening Assays, Antitumor , HT29 Cells , Humans , Marine Biology , Quinones/chemistry , Quinones/pharmacology , Sesquiterpenes/chemistry , Sesquiterpenes/pharmacology , Tumor Cells, Cultured
9.
Mar Drugs ; 8(7): 2142-52, 2010 Jul 13.
Article in English | MEDLINE | ID: mdl-20714428

ABSTRACT

Methanol extracts of two specimens of the soft coral Nephthea sp. collected from the Seribu Islands, Indonesia, were active in an anticancer bioassay. One new (1) and four known diterpenes (2-5) based on the cembrane carbon skeleton were isolated from these extracts, as was arachidonic acid (8). The structures of all compounds were elucidated using NMR, including 1,1-ADEQUATE and 1D gradient selective NOESY where applicable to determine the relative stereochemistry. Spectroscopic data, including 1H and 13C NMR, UV, IR and optical rotations are reported when enough material was available and where this has not been done previously. Inhibition assays employing three cancer cell lines; SF-268 (CNS), MCF-7 (breast), and H460 (lung) were used to guide the isolation of all compounds.


Subject(s)
Anthozoa/chemistry , Antineoplastic Agents/pharmacology , Diterpenes/pharmacology , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/isolation & purification , Breast Neoplasms/drug therapy , Breast Neoplasms/pathology , Cell Line, Tumor , Central Nervous System Neoplasms/drug therapy , Central Nervous System Neoplasms/pathology , Diterpenes/isolation & purification , Drug Screening Assays, Antitumor , Female , Humans , Indonesia , Lung Neoplasms/drug therapy , Lung Neoplasms/pathology , Spectrum Analysis/methods
10.
Mar Drugs ; 8(1): 190-9, 2010 Jan 22.
Article in English | MEDLINE | ID: mdl-20161977

ABSTRACT

The viviparous Great Barrier Reef sponge Luffariella variabilis (Poléjaeff 1884) contains a range of secondary metabolites, including manoalide (1) and manoalide monoacetate (3). ESI (+) FTICR-MS accurate mass determination has, for the first time, been used to detected the presence of 3 only in an organic extract of a single L. variabilis larva showing that the parentally produced 3 is sequestered in the larva. As 3 has previously been shown to have antibacterial and quorum sensing inhibition activity, and readily converts to 1, which also exhibits similar activity, it may provide a chemical defence against predation and microbial attack.


Subject(s)
Acetates/analysis , Porifera/chemistry , Spectrometry, Mass, Electrospray Ionization/methods , Spectroscopy, Fourier Transform Infrared/methods , Terpenes/analysis , Acetates/chemistry , Analytic Sample Preparation Methods , Animals , Anti-Bacterial Agents/analysis , Anti-Bacterial Agents/chemistry , Larva/chemistry , Marine Toxins/analysis , Marine Toxins/chemistry , Microchemistry/methods , Molecular Structure , Pacific Ocean , Queensland , Terpenes/chemistry
11.
J Nat Prod ; 72(6): 1115-20, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19505081

ABSTRACT

Eusynstyelamides A-C (1-3) were isolated from the Great Barrier Reef ascidian Eusynstyela latericius, together with the known metabolites homarine and trigonelline. The structures of 1-3, with relative configurations, were elucidated by interpretation of their spectroscopic data (NMR, MS, UV, IR, and CD). The NMR data of 1 were found to be virtually identical to that reported for eusynstyelamide (4), isolated from E. misakiensis, indicating that a revision of the structure of 4 is needed. Eusynstyelamides A-C exhibited inhibitory activity against neuronal nitric oxide synthase (nNOS), with IC(50) values of 41.7, 4.3, and 5.8 microM, respectively, whereas they were found to be nontoxic toward the three human tumor cell lines MCF-7 (breast), SF-268 (CNS), and H-460 (lung). Compounds 1 and 2 displayed mild inhibitory activity toward Staphylococcus aureus (IC(50) 5.6 and 6.5 mM, respectively) and mild inhibitory activity toward the C(4) plant regulatory enzyme pyruvate phosphate dikinase (PPDK) (IC(50) values of 19 and 20 mM, respectively).


Subject(s)
Indoles/isolation & purification , Indoles/pharmacology , Nitric Oxide Synthase Type I/antagonists & inhibitors , Urochordata/chemistry , Animals , Drug Screening Assays, Antitumor , Female , Humans , Indoles/chemistry , Inhibitory Concentration 50 , Molecular Structure , Nuclear Magnetic Resonance, Biomolecular , Pyruvate, Orthophosphate Dikinase/antagonists & inhibitors , Staphylococcus aureus/drug effects
12.
J Nat Prod ; 72(2): 290-4, 2009 Feb 27.
Article in English | MEDLINE | ID: mdl-19206511

ABSTRACT

Dereplication of a methanolic extract of the marine sponge Ianthella flabelliformis using FTICR-MS accurate mass determination and MS(n) techniques enabled rapid and unambiguous detection of a new compound among a plethora of known compounds. Isolation of this compound and the known 19-deoxy analogue using the hyphenated technique LC-UV/MS-SPE-NMR was undertaken, and the structures were confirmed, from a single chromatographic run, as 19-hydroxyaraplysillin-I N(20)-sulfamate (1) and araplysillin-I N(20)-sulfamate (2).


Subject(s)
Chromatography, Liquid/methods , Hydrocarbons, Brominated/isolation & purification , Isoxazoles/isolation & purification , Nuclear Magnetic Resonance, Biomolecular/methods , Porifera/chemistry , Animals , Hydrocarbons, Brominated/chemistry , Isoxazoles/chemistry , Marine Biology , Molecular Structure
13.
Mar Drugs ; 7(4): 565-75, 2009 Nov 12.
Article in English | MEDLINE | ID: mdl-20098598

ABSTRACT

From the dichloromethane/methanol extract of the crinoid Colobometra perspinosa, collected south east of Richards Island (Bedara), Family Islands, Central Great Barrier Reef, Australia, 3-(1'-hydroxypropyl)-1,6,8-trihydroxy-9,10-anthraquinone [one of the two stereoisomers of rhodoptilometrin, (1)], 3-propyl-1,6,8-trihydroxy-9,10-anthraquinone (3), 2-[(phenylacetyl)amino]ethanesulfonic acid (4), and 4-hydroxybutanoic acid (5) were isolated. Comparison of (1)H- and (13)C-NMR data for rhodoptilometrin (1) with those reported in the literature showed significant differences for some resonances associated with rings A and C. In an attempt to provide accurately assigned (1)H- and (13)C-NMR data, as well as to confirm the structure of 1, a thorough NMR investigation of this compound was undertaken. Measurements included: concentration dependent (13)C, 1D selective NOE, HSQC, HMBC and 1,1-ADEQUATE. The NMR data for 4 and 5 are reported here for the first time, as is their occurrence from the marine environment. The in vitro anticancer activity of the original extract was found to be associated with 1, 3 and 5.


Subject(s)
Anthraquinones/chemistry , Echinodermata/chemistry , Animals , Anthraquinones/pharmacology , Australia , Cell Line, Tumor , Drug Screening Assays, Antitumor , Humans , Magnetic Resonance Spectroscopy , Structure-Activity Relationship
14.
Mar Biotechnol (NY) ; 10(1): 64-74, 2008.
Article in English | MEDLINE | ID: mdl-17899268

ABSTRACT

The Great Barrier Reef sponge Luffariella variabilis (Poléjaeff 1884) produces a range of potent anti-inflammatory compounds as its major metabolites. These major metabolites-manoalide monoacetate, manoalide, luffariellin A and seco-manoalide-were monitored temporally and spatially to quantify the potential yield from wild harvest or aquaculture. Production of the major metabolites was hardwired at the population level with little variation in space and time over meters to tens of kilometers in the Palm Islands, Queensland, Australia. Manoalide monoacetate (35 to 70 mg g(-1) dry weight of sponge) was consistently the most abundant compound followed by manoalide (15 to 20 mg g(-1) dry weight). Luffariellin A and seco-manoalide were 10 to 70 times less abundant and varied between 0 and 3 mg g(-1) dry weight. On a larger spatial scale, L. variabilis from Davies Reef and Magnetic Island contained the same rank order and yields of compounds as the Palm Islands, indicating a generality of pattern over at least 100 km. The "hardwiring" of metabolite production at the population level by L. variabilis was also reflected in the lack of any inductive effect on metabolite production. In addition, individually monitored sponges produced fixed ratios of the major metabolites over time (years). However, these ratios varied between individuals, with some individuals consistently producing high levels of manoalide and manoalide monoacetate, providing the potential for selection of high-yielding stocks.


Subject(s)
Porifera/chemistry , Terpenes/analysis , Analysis of Variance , Animals , Chromatography, High Pressure Liquid , Pacific Ocean , Queensland , Terpenes/chemistry
15.
Molecules ; 12(7): 1376-88, 2007 Jul 11.
Article in English | MEDLINE | ID: mdl-17909493

ABSTRACT

Eight naturally occurring marine-sponge derived sesquiterpenoid quinones were evaluated as potential inhibitors of pyruvate phosphate dikinase (PPDK), a C4 plant regulatory enzyme. Of these, the hydroxyquinones ilimaquinone, ethylsmenoquinone and smenoquinone inhibited PPDK activity with IC50's (reported with 95% confidence intervals) of 285.4 (256.4-317.7), 316.2 (279.2-358.1) and 556.0 (505.9-611.0) microM, respectively, as well as being phytotoxic to the C4 plant Digitaria ciliaris. The potential anti-inflammatory activity of these compounds, using bee venom phospholipase A2 (PLA2), was also evaluated. Ethylsmenoquinone, smenospongiarine, smenospongidine and ilimaquinone inhibited PLA2 activity (% inhibition of 73.2 +/- 4.8 at 269 microM, 61.5 +/- 6.1 at 242 microM, 41.0 +/- 0.6 at 224 microM and 36.4 +/- 8.2 at 279 microM, respectively). SAR analyses indicate that a hydroxyquinone functionality and a short, hydroxide/alkoxide side-chain atC-20 is preferred for inhibition of PPDK activity, and that a larger amine side-chain at C-20 is tolerated for PLA2 inhibitory activity.


Subject(s)
Porifera/chemistry , Quinones/metabolism , Sesquiterpenes/metabolism , Animals , Anti-Inflammatory Agents/pharmacology , Digitaria/drug effects , Dose-Response Relationship, Drug , Herbicides/pharmacology , Humans , Models, Chemical , Quinones/chemistry , Sesquiterpenes/chemistry
16.
J Nat Prod ; 70(4): 648-51, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17295541

ABSTRACT

Chemical investigation of the sponge Luffariella variabilis collected from the Palm Island group of the Great Barrier Reef, Australia, yielded three new acetylated compounds, 25-acetoxyluffariellin A (1), 25-acetoxyluffariellin B (2), and 25-acetoxyseco-manoalide (3). The structures of the new compounds were elucidated on the basis of interpretation of their spectroscopic data. The known metabolites manoalide (4), seco-manoalide (5), luffariellin A (8), and manoalide monoacetate (10) were also isolated. The new acetylated compounds (1-3) were labile in the sponge tissue when samples were allowed to thaw prior to extraction, but were stable once isolated. Sponge samples that were completely thawed contained only hydroxylated compounds (alcohols). This finding supported the deduction that the acetylated compounds are being enzymatically transformed and/or degraded.


Subject(s)
Alkynes/chemistry , Alkynes/isolation & purification , Porifera/chemistry , Terpenes/chemistry , Terpenes/isolation & purification , Animals , Molecular Structure , Sesterterpenes
17.
Appl Environ Microbiol ; 73(6): 1921-7, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17220253

ABSTRACT

A total of 2,245 extracts, derived from 449 marine fungi cultivated in five types of media, were screened against the C(4) plant enzyme pyruvate phosphate dikinase (PPDK), a potential herbicide target. Extracts from several fungal isolates selectively inhibited PPDK. Bioassay-guided fractionation of one isolate led to the isolation of the known compound unguinol, which inhibited PPDK with a 50% inhibitory concentration of 42.3 +/- 0.8 muM. Further kinetic analysis revealed that unguinol was a mixed noncompetitive inhibitor of PPDK with respect to the substrates pyruvate and ATP and an uncompetitive inhibitor of PPDK with respect to phosphate. Unguinol had deleterious effects on a model C(4) plant but no effect on a model C(3) plant. These results indicate that unguinol inhibits PPDK via a novel mechanism of action which also translates to an herbicidal effect on whole plants.


Subject(s)
Enzyme Inhibitors/isolation & purification , Enzyme Inhibitors/pharmacology , Fungi/metabolism , Herbicides/isolation & purification , Herbicides/pharmacology , Heterocyclic Compounds, 3-Ring/isolation & purification , Heterocyclic Compounds, 3-Ring/pharmacology , Pyruvate, Orthophosphate Dikinase/antagonists & inhibitors , DNA, Fungal/chemistry , DNA, Fungal/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , DNA, Ribosomal Spacer/chemistry , DNA, Ribosomal Spacer/genetics , Digitaria/drug effects , Fungi/classification , Fungi/isolation & purification , Hordeum/drug effects , Kinetics , Molecular Sequence Data , Phylogeny , Protein Binding , RNA, Ribosomal, 18S/genetics , Sequence Analysis, DNA
18.
J Agric Food Chem ; 53(10): 3856-62, 2005 May 18.
Article in English | MEDLINE | ID: mdl-15884807

ABSTRACT

Marine organism derived extracts, previously identified as containing compounds that inhibited the C4 acid cycle enzyme pyruvate P(i) dikinase (PPDK), were assessed for their ability to exhibit an effect on the C4 plants Digitaria ciliaris and Echinochloa crus-galli. Oxygen electrode studies revealed that over half of these extracts inhibited C4 acid driven photosynthesis in leaf slices. Seventeen extracts had a deleterious effect on C4 plants in vivo within 24 h, whereas 36 caused an observable phytotoxic response in one or both of the C4 plants used for in vivo testing. None of the extracts inhibited PPDK metabolism of pyruvate via a directly competitive mechanism, instead hindering the enzyme by either mixed or uncompetitive means. This screening strategy, using a suite of assays, led to the isolation and identification of the herbicidal marine natural product ilimaquinone.


Subject(s)
Enzyme Inhibitors/pharmacology , Herbicides/pharmacology , Plant Proteins/antagonists & inhibitors , Pyruvate, Orthophosphate Dikinase/antagonists & inhibitors , Quinones/pharmacology , Sesquiterpenes/pharmacology , Animals , Mollusca/chemistry , Photosynthesis/drug effects , Plants/drug effects , Porifera/chemistry , Pyruvate Kinase , Quinones/isolation & purification , Sesquiterpenes/isolation & purification , Starfish/chemistry , Urochordata/chemistry
19.
J Biomol Screen ; 10(1): 67-75, 2005 Feb.
Article in English | MEDLINE | ID: mdl-15695345

ABSTRACT

Plants using the C(4) photosynthetic pathway are highly represented among the world's worst weeds, with only 4 C(4) species being agriculturally productive (maize, sorghum, millet, and sugar cane). With the C(4) acid cycle operating as a biochemical appendage of C(3) photosynthesis, the additional enzymes involved in C(4) photosynthesis represent an attractive target for the development of weed-specific herbicides. The rate-limiting enzyme of this metabolic pathway is pyruvate orthophosphate dikinase (PPDK). PPDK, coupled with phosphoenolpyruvate carboxylase and nicotinamide adenine dinucleotide-malate dehydrogenase, was used to develop a microplate-based assay to detect inhibitors of enzymes of the C(4) acid cycle. The resulting assay had a Z' factor of 0.61, making it a high-quality assay able to reliably identify active test samples. Organic extracts of 6679 marine macroscopic organisms were tested within the assay, and 343 were identified that inhibited the 3 enzyme-coupled reaction. A high confirmation rate was achieved, with 95% of these hit extracts proving active again upon retesting. Sequential addition of phosphoenolpyruvate and oxaloacetate to the assay facilitated identification of 83 extracts that specifically inhibited PPDK.


Subject(s)
Drug Evaluation, Preclinical/methods , Enzyme Inhibitors/pharmacology , Herbicides/pharmacology , Plants/drug effects , Plants/enzymology , Pyruvate, Orthophosphate Dikinase/antagonists & inhibitors , Dimethyl Sulfoxide/pharmacology , Enzyme Inhibitors/chemistry , Herbicides/chemistry , Malate Dehydrogenase/antagonists & inhibitors , Malate Dehydrogenase/metabolism , Molecular Structure , Oxalic Acid/pharmacology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/metabolism , Plant Extracts/metabolism , Pyruvate, Orthophosphate Dikinase/metabolism , Species Specificity , Time Factors
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