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1.
J Mech Behav Biomed Mater ; 110: 103944, 2020 10.
Article in English | MEDLINE | ID: mdl-32957237

ABSTRACT

BACKGROUND: During revision total knee arthroplasty (rTKA), proximal tibial bone loss is frequently encountered and can result in a less-stable bone-implant fixation. A 3D printed titanium revision augment that conforms to the irregular shape of the proximal tibia was recently developed. The purpose of this study was to evaluate the fixation stability of rTKA with this augment in comparison to conventional cemented rTKA. METHODS: Primary total knee arthroplasty (pTKA) surgery was performed on 11 pairs of thawed fresh-frozen cadaveric tibias (22 tibias). Fixation stability testing was conducted using a three-stage eccentric loading protocol. Bone-implant micromotion was measured using a high-resolution optical system. The pTKA were removed. Revision TKA was performed using a 3D printed titanium augment or a standard fully cemented stem. The three-stage eccentric loading protocol was repeated and micromotion was measured for the revision implants. RESULTS: After rTKA, the mean vertical micromotion was 28.1 µm ± (SD) 20.3 µm in the control group and 17.5 µm ± 18.7 µm in the experimental group. There was significantly less micromotion in the experimental group (p = 0.029). CONCLUSIONS: This study suggests that early fixation stability of revision TKA with the novel 3D printed titanium augment is better then the conventional fully cemented rTKA. The early press-fit fixation of the augment is likely sufficient for promoting bony ingrowth of the augment in vivo. Further studies are needed to investigate the long-term in-vivo fixation of the novel 3D printed augment.


Subject(s)
Arthroplasty, Replacement, Knee , Knee Prosthesis , Cadaver , Humans , Printing, Three-Dimensional , Prosthesis Design , Tibia/surgery , Titanium
2.
Bone Joint J ; 101-B(5): 565-572, 2019 May.
Article in English | MEDLINE | ID: mdl-31038991

ABSTRACT

AIMS: The purpose of the present study was to compare patient-specific instrumentation (PSI) and conventional surgical instrumentation (CSI) for total knee arthroplasty (TKA) in terms of early implant migration, alignment, surgical resources, patient outcomes, and costs. PATIENTS AND METHODS: The study was a prospective, randomized controlled trial of 50 patients undergoing TKA. There were 25 patients in each of the PSI and CSI groups. There were 12 male patients in the PSI group and seven male patients in the CSI group. The patients had a mean age of 69.0 years (sd 8.4) in the PSI group and 69.4 years (sd 8.4) in the CSI group. All patients received the same TKA implant. Intraoperative surgical resources and any surgical waste generated were recorded. Patients underwent radiostereometric analysis (RSA) studies to measure femoral and tibial component migration over two years. Outcome measures were recorded pre- and postoperatively. Overall costs were calculated for each group. RESULTS: There were no differences (p > 0.05) in any measurement of migration at two years for either the tibial or femoral components. Movement between one and two years was < 0.2 mm, indicating stable fixation. There were no differences in coronal or sagittal alignment between the two groups. The PSI group took a mean 6.1 minutes longer (p = 0.04) and used a mean 3.4 less trays (p < 0.0001). Total waste generated was similar (10 kg) between the two groups. The PSI group cost a mean CAD$1787 more per case (p < 0.01). CONCLUSION: RSA criteria suggest that both groups will have revision rates of approximately 3% at five years. The advantages of PSI were minimal or absent for surgical resources used and waste eliminated, and for meeting target alignment, yet had significantly greater costs. Therefore, we conclude that PSI may not offer any advantage over CSI for routine primary TKA cases. Cite this article: Bone Joint J 2019;101-B:565-572.


Subject(s)
Arthroplasty, Replacement, Knee/instrumentation , Delivery of Health Care/statistics & numerical data , Health Care Costs/statistics & numerical data , Knee Prosthesis/adverse effects , Aged , Arthroplasty, Replacement, Knee/adverse effects , Arthroplasty, Replacement, Knee/economics , Canada , Delivery of Health Care/economics , Female , Humans , Male , Middle Aged , Osteoarthritis, Knee/surgery , Prospective Studies , Prosthesis Design , Prosthesis Failure , Treatment Outcome
3.
Knee ; 26(1): 97-105, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30554906

ABSTRACT

BACKGROUND: As assessment with inertial-measurement-units (IMUs) increases in research and in clinics, it is important to be aware of the repeatability of these sensors. The objectives of this experiment were to evaluate the measurement repeatability of IMU joint angles using a repeatable robot controller and an anthropomorphic leg phantom and to determine effects of joint speed and sensor positioning on the angles collected by these sensors. Comparisons to an electro-goniometer and three-dimensional (3D) motion capture cameras were also completed. METHODS: Two dual-IMU setups (posterior and lateral) were tested concurrently with an electro-goniometer and 3D motion capture cameras using a repeatable robot controller and a leg phantom. All modalities were attached to the phantom, which was flexed 10 times using a pre-programmed motion pathway during each test. Mean angles were compared across tests. Effects of joint speed, sensor re-positioning, and anatomical placement of the sensors on repeatability were assessed. RESULTS: Re-positioning caused greater deviation to the maximum and minimum angles than differences in speed. Overall, the means ±â€¯standard deviations, and 95% confidence intervals of the maximum angles across all tests for the 3D camera markers, electro-goniometer, posterior IMUs, and lateral IMUs were 119.4 ±â€¯0.3° (119.4, 119.5), 112.4 ±â€¯0.5° (112.3, 112.5), 116.2 ±â€¯2.4° (115.7, 116.7), and 118.3 ±â€¯1.1° (118.1, 118.6). CONCLUSIONS: Both posterior and lateral IMU setups demonstrated acceptable repeatability in measurement of range of motion that was advantageous to manual goniometer methods. Posterior and lateral IMU setups demonstrated overlapping standard deviations about their means.


Subject(s)
Monitoring, Physiologic/instrumentation , Range of Motion, Articular/physiology , Signal Processing, Computer-Assisted , Wearable Electronic Devices , Biomechanical Phenomena , Humans , Motion , Reproducibility of Results , Transducers
4.
Bone Joint J ; 100-B(7): 891-897, 2018 07.
Article in English | MEDLINE | ID: mdl-29954202

ABSTRACT

Aims: The aim of this study was to determine whether there is a difference in the rate of wear between acetabular components positioned within and outside the 'safe zones' of anteversion and inclination angle. Patients and Methods: We reviewed 100 hips in 94 patients who had undergone primary total hip arthroplasty (THA) at least ten years previously. Patients all had the same type of acetabular component with a bearing couple which consisted of a 28 mm cobalt-chromium head on a highly crosslinked polyethylene (HXLPE) liner. A supine radiostereometric analysis (RSA) examination was carried out which acquired anteroposterior (AP) and lateral paired images. Acetabular component anteversion and inclination angles were measured as well as total femoral head penetration, which was divided by the length of implantation to determine the rate of polyethylene wear. Results: The mean anteversion angle was 19.4° (-15.2° to 48°, sd 11.4°), the mean inclination angle 43.4° (27.3° to 60.5°, sd 6.6°), and the mean wear rate 0.055 mm/year (sd 0.060). Exactly half of the hips were positioned inside the 'safe zone'. There was no difference (median difference, 0.012 mm/year; p = 0.091) in the rate of wear between acetabular components located within or outside the 'safe zone'. When compared to acetabular components located inside the 'safe zone', the wear rate was no different for acetabular components that only achieved the target anteversion angle (median difference, 0.012 mm/year; p = 0.138), target inclination angle (median difference, 0.013 mm/year; p = 0.354), or neither target (median difference, 0.012 mm/year; p = 0.322). Conclusion: Placing the acetabular component within or outside the 'safe zone' did not alter the wear rate of HXLPE at long-term follow-up to a level that risked osteolysis. HXLPE appears to be a forgiving bearing material in terms of articular surface wear, but care must still be taken to position the acetabular component correctly so that the implant is stable. Cite this article: Bone Joint J 2018;100-B:891-7.


Subject(s)
Acetabulum/surgery , Arthroplasty, Replacement, Hip/adverse effects , Hip Prosthesis/adverse effects , Polyethylene/adverse effects , Prosthesis Failure/etiology , Aged , Arthroplasty, Replacement, Hip/methods , Cohort Studies , Female , Hip Joint/surgery , Humans , Male , Middle Aged , Osteoarthritis, Hip/surgery , Prosthesis Design/adverse effects , Radiostereometric Analysis , Retrospective Studies
5.
Bone Joint J ; 100-B(2): 170-175, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29437058

ABSTRACT

AIMS: The aim of this study was to evaluate the long-term inducible displacement of cemented tibial components ten years after total knee arthroplasty (TKA). PATIENTS AND METHODS: A total of 15 patients from a previously reported prospective trial of fixation using radiostereometric analysis (RSA) were examined at a mean of 11 years (10 to 11) postoperatively. Longitudinal supine RSA examinations were acquired at one week, one year, and two years postoperatively and at final follow-up. Weight-bearing RSA examinations were also undertaken with the operated lower limb in neutral and in maximum internal rotation positions. Maximum total point motion (MTPM) was calculated for the longitudinal and inducible displacement examinations (supine versus standing, standing versus internal rotation, and supine versus standing with internal rotation). RESULTS: All patients showed some inducible displacement. Two patients with radiolucent lines had greater mean standing-supine MTPM displacement (1.35; sd 0.38) compared with the remaining patients (0.68; sd 0.36). These two patients also had a greater mean longitudinal MTPM at ten years (0.64; sd 0.50) compared with the remaining patients (0.39; sd 0.13 mm). CONCLUSION: Small inducible displacements in well-fixed cemented tibial components were seen ten years postoperatively, of a similar magnitude to that which has been reported for well-fixed components one to two years postoperatively. Greater displacements were found in components with radiolucent lines. Cite this article: Bone Joint J 2018;100-B:170-5.


Subject(s)
Arthroplasty, Replacement, Knee , Knee Prosthesis , Prosthesis Failure , Tibia/surgery , Aged , Aged, 80 and over , Female , Humans , Longitudinal Studies , Male , Middle Aged , Posture , Prospective Studies , Prosthesis Design , Radiostereometric Analysis , Weight-Bearing
6.
Bone Joint J ; 98-B(5): 616-21, 2016 May.
Article in English | MEDLINE | ID: mdl-27143731

ABSTRACT

AIMS: The purpose of the present study was to examine the long-term fixation of a cemented fixed-bearing polished titanium tibial baseplate (Genesis ll). PATIENTS AND METHODS: Patients enrolled in a previous two-year prospective trial (n = 35) were recalled at ten years. Available patients (n = 15) underwent radiostereometric analysis (RSA) imaging in a supine position using a conventional RSA protocol. Migration of the tibial component in all planes was compared between initial and ten-year follow-up. Outcome scores including the Knee Society Score, Western Ontario and McMaster Universities Arthritis Index, 12-item Short Form Health Survey, Forgotten Joint Score, and University of California, Los Angeles Activity Score were recorded. RESULTS: At ten years, the mean migration of the tibial component was less than 0.1 mm and 0.1° in all planes relative to the post-operative RSA exam. Maximum total point movement increased with time (p = 0.002) from 0.23 mm (sd 0.18) at six weeks to 0.42 mm (sd 0.20) at ten years. CONCLUSION: The low level of tibial baseplate migration found in the present study correlates to the low rate of revision for this implant as reported in individual studies and in joint replacement registries. TAKE HOME MESSAGE: Overall, the implant was found to be well fixed at ten years, supporting its continued clinical use and the predictive power of RSA for determining long-term fixation of implants. Cite this article: Bone Joint J 2016;98-B:616-21.


Subject(s)
Arthroplasty, Replacement, Knee/instrumentation , Knee Joint/diagnostic imaging , Knee Prosthesis , Aged , Female , Follow-Up Studies , Humans , Knee Joint/surgery , Male , Osteoarthritis, Knee/surgery , Prospective Studies , Radiostereometric Analysis , Tibia/diagnostic imaging , Tibia/surgery , Titanium
7.
Bone Joint J ; 97-B(7): 911-6, 2015 Jul.
Article in English | MEDLINE | ID: mdl-26130345

ABSTRACT

Tribocorrosion at the head-neck taper interface - so-called 'taperosis' - may be a source of metal ions and particulate debris in metal-on-polyethylene total hip arthroplasty (THA). We examined the effect of femoral head length on fretting and corrosion in retrieved head-neck tapers in vivo for a minimum of two years (mean 8.7 years; 2.6 to 15.9). A total of 56 femoral heads ranging from 28 mm to 3 mm to 28 mm + 8 mm, and 17 femoral stems featuring a single taper design were included in the study. Fretting and corrosion were scored in three horizontally oriented concentric zones of each taper by stereomicroscopy. Head length was observed to affect fretting (p = 0.03), with 28 mm + 8 mm femoral heads showing greater total fretting scores than all other head lengths. The central zone of the femoral head bore taper was subject to increased fretting damage (p = 0.01), regardless of head length or stem offset. High-offset femoral stems were associated with greater total fretting of the bore taper (p = 0.04). Increased fretting damage is seen with longer head lengths and high-offset femoral stems, and occurs within a central concentric zone of the femoral head bore taper. Further investigation is required to determine the effect of increased head size, and variations in head-neck taper design.


Subject(s)
Arthroplasty, Replacement, Hip , Hip Prosthesis , Prosthesis Design/adverse effects , Prosthesis Failure/etiology , Adult , Aged , Aged, 80 and over , Corrosion , Female , Femur Head , Humans , Male , Middle Aged , Retrospective Studies
8.
J Bone Joint Surg Br ; 93(3): 409-13, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21357966

ABSTRACT

We present a case of early retrieval of an Oxinium femoral head and corresponding polyethylene liner where there was significant surface damage to the head and polyethylene. The implants were retrieved at the time of revision surgery to correct leg-length discrepancy just 48 hours after the primary hip replacement. Appropriate analysis of the retrieved femoral head demonstrated loss of the Oxinium layer with exposure of the underlying substrate and transfer of titanium from the acetabular shell at the time of a reduction of the index total hip replacement. In addition, the level of damage to the polyethylene was extensive despite only 48 hours in situ. The purpose of this report is to highlight the care that is required at the time of reduction, especially with these hard femoral counter-faces such as Oxinium. To our knowledge, the damage occurring at the time of reduction has not been previously reported following the retrieval of an otherwise well-functioning hip replacement.


Subject(s)
Arthroplasty, Replacement, Hip/adverse effects , Hip Prosthesis , Prosthesis Failure , Equipment Failure Analysis/methods , Female , Femur Head/surgery , Humans , Middle Aged , Polyethylene , Prosthesis Design , Reoperation
9.
Equine Vet J ; 42(1): 68-72, 2010 Jan.
Article in English | MEDLINE | ID: mdl-20121917

ABSTRACT

REASONS FOR PERFORMING STUDY: Arterial calcification is found frequently in the pulmonary artery of racehorses, but the aetiology is unknown. Calcification might be associated with increased wall stress due to arterial geometry (shape) and exercise-induced hypertension. HYPOTHESIS: High wall stress levels are found in the regions associated with calcified lesion formation, exacerbated as transluminal pressure increases to levels associated with exercise. METHODS: The pulmonary arteries of 5 horses, unaffected by calcification, were dissected and pressurised to resting and exercising physiological transluminal pressures and scanned with MRI. Arterial geometries were reconstructed to form 3D computer models and finite element analyses performed. Wall stress levels were measured in 4 regions of interest: the arterial trunk and bifurcation, the wall ipsilateral and contralateral to the bifurcation. Measurements were made for arterial transluminal pressures of 25, 50 and 100 mmHg. RESULTS: High wall stress levels were consistently found at the pulmonary artery bifurcation and wall ipsilateral to the bifurcation, where calcified lesions typically form. Lower wall stress levels were found along the trunk and the wall contralateral to the bifurcation where lesions are less frequently found. Wall stress levels increased 5-fold over a 4-fold increase in pressure. The wall stress levels ranged 10 kPa in the wall of the branch contralateral to the bifurcation at 25 mmHg to 400 kPa in the bifurcation at 100 mmHg. CONCLUSIONS: Wall stress from arterial geometry and increased pulmonary artery transluminal pressure are factors that may be associated with calcification of the equine pulmonary artery. POTENTIAL RELEVANCE: Arterial calcification may increase the risk of arterial wall failure in racing horses.


Subject(s)
Finite Element Analysis , Horses/physiology , Pulmonary Artery/physiology , Animals , Biomechanical Phenomena , Computer Simulation , Models, Biological
10.
J Pept Res ; 64(6): 210-24, 2004 Dec.
Article in English | MEDLINE | ID: mdl-15613085

ABSTRACT

We propose a molecular model for phospholipid membrane lysis by the ubiquitous plant toxins called thionins. Membrane lysis constitutes the first major effect exerted by these toxins that initiates a cascade of cytoplasmic events leading to cell death. X-ray crystallography, solution nuclear magnetic resonance (NMR) studies, small angle X-ray scattering and fluorescence spectroscopy provide evidence for the mechanism of membrane lysis. In the crystal structures of two thionins in the family, alpha(1)- and beta-purothionins (MW: approximately 4.8 kDa), a phosphate ion and a glycerol molecule are modeled bound to the protein. (31)P NMR experiments on the desalted toxins confirm phosphate-ion binding in solution. Evidence also comes from phospholipid partition experiments with radiolabeled toxins and with fluorescent phospholipids. This data permit a model of the phospholipid-protein complex to be built. Further, NMR experiments, one-dimensional (1D)- and two-dimensional (2D)-total correlation spectroscopy (TOCSY), carried out on the model compounds glycerol-3-phosphate (G3P) and short chain phospholipids, supported the predicted mode of phospholipid binding. The toxins' high positive charge, which renders them extremely soluble (>300 mg/mL), and the phospholipid-binding specificity suggest the toxin-membrane interaction is mediated by binding to patches of negatively charged phospholipids [phosphatidic acid (PA) or phosphatidyl serine (PS)] and their subsequent withdrawal. The formation of proteolipid complexes causes solubilization of the membrane and its lysis. The model suggests that the oligomerization may play a role in toxin's activation process and provides insight into the structural principles of protein-membrane interactions.


Subject(s)
Cell Membrane/chemistry , Phospholipids/chemistry , Plant Proteins/chemistry , Toxins, Biological/chemistry , Antimicrobial Cationic Peptides , Binding Sites , Cell Membrane/metabolism , Crystallography, X-Ray , Fluorescence Polarization , Glycerophosphates/chemistry , Magnetic Resonance Spectroscopy , Models, Chemical , Models, Molecular , Phospholipids/metabolism , Plant Proteins/metabolism , Pyrularia/chemistry , Sequence Alignment , Solubility , Toxins, Biological/metabolism
11.
Proc Natl Acad Sci U S A ; 98(20): 11242-7, 2001 Sep 25.
Article in English | MEDLINE | ID: mdl-11572978

ABSTRACT

Diverse biochemical and biophysical experiments indicate that all proteins, regardless of size or origin, undergo a dynamic transition near 200 K. The cause of this shift in dynamic behavior, termed a "glass transition," and its relation to protein function are important open questions. One explanation postulated for the transition is solidification of correlated motions in proteins below the transition. We verified this conjecture by showing that crambin's radius of gyration (Rg) remains constant below approximately 180 K. We show that both atom position and dynamics of protein and solvent are physically coupled, leading to a novel cooperative state. This glassy state is identified by negative slopes of the Debye-Waller (B) factor vs. temperature. It is composed of multisubstate side chains and solvent. Based on generalization of Adam-Gibbs' notion of a cooperatively rearranging region and decrease of the total entropy with temperature, we calculate the slope of the Debye-Waller factor. The results are in accord with experiment.


Subject(s)
Plant Proteins/chemistry , Plant Proteins/metabolism , Proteins/chemistry , Proteins/metabolism , Crystallography, X-Ray/methods , Entropy , Hot Temperature , Models, Molecular , Models, Theoretical , Protein Conformation , Thermodynamics , Water
12.
Mol Pharmacol ; 60(2): 373-81, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11455025

ABSTRACT

A homology model of the dopamine D2 receptor was constructed based on the crystal structure of rhodopsin. A putative sodium-binding pocket identified in an earlier model (PDB ) was revised. It is now defined by Asn-419 backbone oxygen at the apex of a pyramid and Asp-80, Ser-121, Asn-419, and Ser-420 at each vertex of the planar base. Asn-423 stabilizes this pocket through hydrogen bonds to two of these residues. Highly conserved Asn-52 is positioned near the sodium pocket, where it hydrogen-bonds with Asp-80 and the backbone carbonyl of Ser-420. Mutation of three of these residues, Asn-52 in helix 1, Ser-121 in helix 3, and Ser-420 in helix 7, profoundly altered the properties of the receptor. Mutants in which Asn-52 was replaced with Ala or Leu or Ser-121 was replaced with Leu exhibited no detectable binding of radioligands, although receptor immunoreactivity in the membrane was similar to that in cells expressing the wild-type D2L receptor. A mutant in which Asn-52 was replaced with Gln, preserving hydrogen-bonding capability, was similar to D2L in affinity for ligands and ability to inhibit cAMP accumulation. Mutants in which either Ser-121 or Ser-420 was replaced with Ala or Asn had decreased affinity for agonists (Ser-121), but increased affinity for the antagonists haloperidol and clozapine. Interestingly, the affinity of these Ser-121 and Ser-420 mutants for substituted benzamide antagonists showed little or no dependence on sodium, consistent with our hypothesis that Ser-121 and Ser-420 contribute to the formation of a sodium-binding pocket.


Subject(s)
Receptors, Dopamine D2/chemistry , Sodium/metabolism , Amino Acid Sequence , Asparagine/genetics , Binding Sites , Cells, Cultured , DNA Mutational Analysis , Humans , Models, Molecular , Molecular Sequence Data , Protein Conformation , Receptors, Dopamine D2/genetics , Receptors, Dopamine D2/metabolism , Serine/genetics
13.
J Med Chem ; 43(16): 3005-19, 2000 Aug 10.
Article in English | MEDLINE | ID: mdl-10956209

ABSTRACT

Agonist affinity changes dramatically as a result of serine to alanine mutations (S193A, S194A, and S197A) within the fifth transmembrane region of D2 dopamine receptors and other receptors for monoamine neurotransmitters. However, agonist 2D-structure does not predict which drugs will be sensitive to which point mutations. Modeling drug-receptor interactions at the 3D level offers considerably more promise in this regard. In particular, a comparison of the same test set of agonists across receptors differing minimally (point mutations) offers promise to enhance the understanding of the structural bases for drug-receptor interactions. We have previously shown that comparative molecular field analysis (CoMFA) can be applied to comparisons of affinity at recombinant D1 and D2 dopamine receptors for the same set of agonists, a differential QSAR. Here, we predicted agonist K(L) for the same set of agonists at wild type D2 vs S193A, S194A, and S197A receptors using CoMFA. Each model used bromocriptine as the template. ln(1/K(L)) values for the low-affinity agonist binding conformation at recombinant wild type and mutant D2 dopamine receptors stably expressed in C6 glioma cells were used as the target property for the CoMFA of the 16 aligned agonist structures. The resulting CoMFA models yielded cross-validated R(2) (q(2)) values ranging from 0.835 to 0.864 and simple R(2) values ranging from 0.999 to 1.000. Predictions of test compound affinities at WT and each mutant receptor were close to measured affinity values. This finding confirmed the predictive ability of the models and their differences from one another. The results strongly support the idea that CoMFA models of the same training set of compounds applied to WT vs mutant receptors can accurately predict differences in drug affinity at each. Furthermore, in a "proof of principle", two different templates were used to derive the CoMFA model for the WT and S193A mutant receptors. Pergolide was chosen as an alternate template because it showed a significant increase in affinity as a result of the S193A mutation. In this instance both the bromocriptine- and pergolide-based CoMFA models were similar to one another but different from those for the WT receptor using bromocriptine- or pergolide- as templates. The pergolide-based S193A model was more strikingly different from that of the WT receptor than was the bromocriptine-based S193A model. This suggests that a "dual-template" approach to differential CoMFA may have special value in elucidating key differences across related receptor types and in determining important elements of the drug-receptor interaction.


Subject(s)
Alanine/genetics , Dopamine Agonists/chemistry , Receptors, Dopamine D2/chemistry , Serine/genetics , Amino Acid Substitution , Animals , Bromocriptine/chemistry , Combinatorial Chemistry Techniques , Dopamine Agonists/chemical synthesis , Dopamine Agonists/metabolism , Models, Molecular , Pergolide/chemistry , Point Mutation , Radioligand Assay , Rats , Receptors, Dopamine D2/genetics , Receptors, Dopamine D2/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Structure-Activity Relationship , Tumor Cells, Cultured
14.
Proc Natl Acad Sci U S A ; 97(7): 3171-6, 2000 Mar 28.
Article in English | MEDLINE | ID: mdl-10737790

ABSTRACT

The charge density distribution of a protein has been refined experimentally. Diffraction data for a crambin crystal were measured to ultra-high resolution (0.54 A) at low temperature by using short-wavelength synchrotron radiation. The crystal structure was refined with a model for charged, nonspherical, multipolar atoms to accurately describe the molecular electron density distribution. The refined parameters agree within 25% with our transferable electron density library derived from accurate single crystal diffraction analyses of several amino acids and small peptides. The resulting electron density maps of redistributed valence electrons (deformation maps) compare quantitatively well with a high-level quantum mechanical calculation performed on a monopeptide. This study provides validation for experimentally derived parameters and a window into charge density analysis of biological macromolecules.


Subject(s)
Plant Proteins/chemistry , Crystallography, X-Ray , Electrons , Protein Conformation
15.
J Biol Chem ; 274(30): 20753-5, 1999 Jul 23.
Article in English | MEDLINE | ID: mdl-10409612

ABSTRACT

We demonstrate with two examples the success and potential of recent developments in x-ray protein crystallography at ultra high resolution. Our preliminary structural analyses using diffraction data collected for the two proteins crambin and savinase show meaningful deviations from the conventional independent spherical atom approximation. A noise-reduction averaging technique enables bonding details of electron distributions in proteins to be revealed experimentally for the first time. We move one step closer to imaging directly the fine details of the electronic structure on which the biological function of a protein is based.


Subject(s)
Protein Conformation , Proteins/chemistry , Animals , Crystallography, X-Ray , Electrons , Humans , Plant Proteins/chemistry
16.
Biophys J ; 76(6): 2912-21, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10354419

ABSTRACT

The crystal structure of the light-harvesting protein phycocyanin from the cyanobacterium Cyanidium caldarium with novel crystal packing has been solved at 1.65-A resolution. The structure has been refined to an R value of 18.3% with excellent backbone and side-chain stereochemical parameters. In crystals of phycocyanin used in this study, the hexamers are offset rather than aligned as in other phycocyanins that have been crystallized to date. Analysis of this crystal's unique packing leads to a proposal for phycobilisome assembly in vivo and for a more prominent role for chromophore beta-155. This new role assigned to chromophore beta-155 in phycocyanin sheds light on the numerical relationships among and function of external chromophores found in phycoerythrins and phycoerythrocyanins.


Subject(s)
Bacterial Proteins/chemistry , Phycocyanin/chemistry , Plant Proteins/chemistry , Rhodophyta/chemistry , Amino Acid Sequence , Biophysical Phenomena , Biophysics , Crystallography, X-Ray , Cyanobacteria/chemistry , Cyanobacteria/genetics , Energy Transfer , Light-Harvesting Protein Complexes , Models, Molecular , Molecular Sequence Data , Phycobilisomes , Phycocyanin/genetics , Phycocyanin/isolation & purification , Protein Conformation , Rhodophyta/genetics , Sequence Homology, Amino Acid , Species Specificity , Static Electricity , Thermodynamics
17.
J Med Chem ; 41(22): 4385-99, 1998 Oct 22.
Article in English | MEDLINE | ID: mdl-9784114

ABSTRACT

We have previously shown that using agonist affinity at recombinant receptors selectively expressed in clonal cells as the dependent variable in three-dimensional quantitative structure-activity relationship studies (3D-QSAR) presents a unique opportunity for accuracy and precision in measurement. Thus, a comparison of affinity's structural determinants for a set of compounds at two different recombinant dopamine receptors represents an attainable goal for 3D-QSAR. A molecular database of bound conformations of 16 structurally diverse agonists was established by alignment with a high-affinity template compound for the D1 receptor, 3-allyl-6-bromo-7,8-dihydroxy-1-phenyl-2,3,4, 5-tetrahydro-1H-benzazepin. A second molecular database of the bound conformations of the same compounds was established against a second template for the D2 receptor, bromocriptine. These aligned structures suggested three-point pharmacophore maps (one cationic nitrogen and two electronegative centers) for the two dopamine receptors, which differed primarily in the height of the nitrogen above the plane of the catechol ring and in the nature of the hydrogen-bonding region. The ln(1/KL) values for the low-affinity agonist binding conformation at recombinant D1 and D2 dopamine receptors stably expressed in C6 glioma cells were used as the target property for the CoMFA (comparative molecular field analysis) of the 16 aligned structures. The resulting CoMFA models yielded cross-validated R2 (q2) values (standard error of prediction) of 0. 879 (1.471, with five principal components) and 0.834 (1.652, with five principal components) for D1 and D2 affinity, respectively. The simple R2 values (standard error of the estimate) were 0.994 (0.323) and 0.999 (0.116), respectively, for D1 and D2 receptor. F values were 341 and 2465 for D1 and D2 models, respectively, with 5 and 10 df. The predictive utility of the CoMFA model was evaluated at both receptors using the dopamine agonists, apomorphine and 7-OH-DPAT. Predictions of KL were accurate at both receptors. Flexible 3D searches of several chemical databases (NCI, MDDR, CMC, ACD, and Maybridge) were done using basic pharmacophore models at each receptor to determine the similarity of hit lists between the two models. The D1 and D2 models yielded different lists of lead compounds. Several of the lead compounds closely resembled high-affinity training set compounds. Finally, homology modeling of agonist binding to the D2 receptor revealed some consistencies and inconsistencies with the CoMFA-derived D2 model and provided a possible rationale for features of the D2 CoMFA contour map. Together these results suggest that CoMFA-homology based models may provide useful insights concerning differential agonist-receptor interactions at related receptors. The results also suggest that comparisons of CoMFA models for two structurally related receptors may be a fruitful approach for differential QSAR.


Subject(s)
Dopamine Agonists/chemistry , Models, Molecular , Receptors, Dopamine D1/agonists , Receptors, Dopamine D2/agonists , Animals , Binding Sites , Databases, Factual , Dopamine Agonists/metabolism , Dopamine Agonists/pharmacology , Humans , Ligands , Macaca mulatta , Molecular Conformation , Protein Structure, Secondary , Rats , Receptors, Dopamine D1/biosynthesis , Receptors, Dopamine D1/chemistry , Receptors, Dopamine D1/metabolism , Receptors, Dopamine D2/biosynthesis , Receptors, Dopamine D2/chemistry , Receptors, Dopamine D2/metabolism , Recombinant Proteins/agonists , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Structure-Activity Relationship , Tumor Cells, Cultured
18.
19.
J Biol Chem ; 272(15): 9597-600, 1997 Apr 11.
Article in English | MEDLINE | ID: mdl-9092482

ABSTRACT

It is not agreed that correlated positions of disordered protein side chains (substate correlations) can be deduced from diffraction data. The pure Ser-22/Ile-25 (SI form) crambin crystal structure confirms correlations deduced for the natural, mixed sequence form of crambin crystals. Physical separation of the mixed form into pure SI form and Pro-22/Leu-25 (PL form) crambin and the PL form crystal structure determination (Yamano, A., and Teeter, M. M. (1994) J. Biol. Chem. 269, 13956-13965) support the proposed (Teeter, M. M., Roe, S. M., and Heo, N. H. (1993) J. Mol. Biol. 230, 292-311) correlation model. Electron density of mixed form crambin crystals shows four possible pairs of side chain conformations for heterogeneous residue 22 and nearby Tyr-29 (2(2) = 4, two conformations for each of two side chains). One combination can be eliminated because of short van der Waals' contacts. However, only two alternates have been postulated to exist in mixed form crambin: Pro-22/Tyr-29A and Ser-22/Tyr-29B. In crystals of the PL form, Pro-22 and Tyr-29A are found to be in direct van der Waals' contact (Yamano, A., and Teeter, M. M. (1994) J. Biol. Chem. 269, 13956-13965). Comparison of the SI form structure with the mixed form electron density confirms that the fourth combination of side chains does not occur and that side chain correlations are mediated by water networks.


Subject(s)
Plant Proteins/chemistry , Amino Acid Sequence , Crystallography, X-Ray , Isoleucine , Models, Molecular , Molecular Sequence Data , Serine , Solvents
20.
Acta Crystallogr D Biol Crystallogr ; 53(Pt 2): 169-78, 1997 Mar 01.
Article in English | MEDLINE | ID: mdl-15299951

ABSTRACT

Despite considerable effort to elucidate the functional role of the kringle domains, relatively little is known about interactions with other protein domains. Most of the crystal structures describe the interactions at the kringle active site. This study suggests a novel way to interpret structural results such as disorder located away from an active site. The crystal structure of human plasminogen kringle 4 (PGK4) has been refined against 10-1.68 A resolution X-ray data (R(merge) = 3.7%) to the standard crystallographic R = 14.7% using the program X-PLOR. The crystals of PGK4 showed significant instability in cell dimensions (changes more than 1.5 A) even at 277 K. The refinement revealed structural details not observed before [Mulichak, Tulinsky & Ravichandran (1991). Biochemistry, 30, 10576-10588], such as clear density for additional side chains and more extensive disorder. Discrete disorder was detected for residues S73, S78, T80, S89, S91, S92, Ml12, S132, C138 and K142. Most of the disordered residues form two patches on the surface of the protein. This localized disorder suggests that these residues may play a role in quaternary interactions and possibly form an interface with the other domains of proteins that contain kringles, such as plasminogen. Although, an additional residue D65 was refined at the beginning of the sequence, still more residues near the peptide cleavage site must be disordered in the crystal.

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