Transcriptional signature of host shift in the seed beetle Zabrotes subfasciatus.

In phytophagous insects, adaptation to a new host is a dynamic process, in which early and later steps may be underpinned by different features of the insect genome. Here, we tested the hypothesis that early steps of this process are underpinned by a shift in gene expression patterns. We set up a short-term artificial selection experiment (10 generations) for the use of an alternative host (Cicer arietinum) on populations of the bean beetle Zabrotes subfasciatus. Using Illumina sequencing on young adult females, we show the selected populations differ in the expression of genes associated to stimuli, signalling, and developmental processes. Particularly, the "C. arietinum" population shows upregulation of histone methylation genes, which may constitute a strategy for fine-tuning the insect global gene expression network. Using qPCR on body regions, we demonstrated that the "Phaseolus vulgaris" population upregulates the genes polygalacturonase and egalitarian and that the expression of an odorant receptor transcript variant changes over generations. Moreover, in this population we detected the existence of vitellogenin (Vg) variants in both males and females, possibly harbouring canonical reproductive function in females and extracellular unknown functions in males. This study provides the basis for future genomic investigations seeking to shed light on the nature of the proximate mechanisms involved in promoting differential gene expression associated to insect development and adaptation to new hosts.

Orange thyme: Phytochemical profiling, in vitro bioactivities of extracts and potential health benefits.

Orange thyme (Thymus fragrantissimus) is becoming widely used in food as a condiment and herbal tea, nevertheless its chemical composition and potential bioactivities are largely unknown. Thus the objective of this work is to obtain a detailed phytochemical profile of T. fragrantissimus by exhaustive ethanolic extraction and by aqueous decoction mimicking its consumption. Extracts showed high content in rosmarinic acid, luteolin-O-hexuronide and eriodictyol-O-hexuronide; these were the main phenolic compounds present in orange thyme accounting for 85% of the total phenolic compounds. Orange thyme extracts presented high scavenging activity against nitric oxide and superoxide radicals. Both extracts presented significant inhibitory effect of tyrosinase activity and moderate anti-acetylcholinesterase activity. Both extracts showed a good in vitro anti-inflammatory activity and a weak anti-proliferative/cytotoxic activity against Caco-2 and HepG2 cell lines supporting its safe use. Orange thyme is a very good source of bioactive compounds with potential use in different food and nutraceutical industries.

Corrigendum: Stochastic Individual-Based Modeling of Bacterial Growth and Division Using Flow Cytometry.

[This corrects the article on p. 2626 in vol. 8, PMID: 29354110.].

Stochastic Individual-Based Modeling of Bacterial Growth and Division Using Flow Cytometry.

A realistic description of the variability in bacterial growth and division is critical to produce reliable predictions of safety risks along the food chain. Individual-based modeling of bacteria provides the theoretical framework to deal with this variability, but it requires information about the individual behavior of bacteria inside populations. In this work, we overcome this problem by estimating the individual behavior of bacteria from population statistics obtained with flow cytometry. For this objective, a stochastic individual-based modeling framework is defined based on standard assumptions during division and exponential growth. The unknown single-cell parameters required for running the individual-based modeling simulations, such as cell size growth rate, are estimated from the flow cytometry data. Instead of using directly the individual-based model, we make use of a modified Fokker-Plank equation. This only equation simulates the population statistics in function of the unknown single-cell parameters. We test the validity of the approach by modeling the growth and division of Pediococcus acidilactici within the exponential phase. Estimations reveal the statistics of cell growth and division using only data from flow cytometry at a given time. From the relationship between the mother and daughter volumes, we also predict that P. acidilactici divide into two successive parallel planes.

Applicability of the simplified acute physiology score (SAPS 3) in Brazilian hospitals.

BACKGROUND AND OBJECTIVES: The SAPS 3 (Simplified Acute Physiology Score 3) prognostic system is composed of 20 parameters, represented by an acute physiology score and assessment of the previous status, aimed at establishing a predictive mortality index for patients admitted to intensive care units (ICU). The objective of this study was to validate this system and determine its discriminatory power in surgical patients in Brazil. METHODS: This is a prospective study undertaken in two surgical ICUs of two different hospitals over a one-year period; patients younger than 16 years, who stay at the ICU for less than 24 hours, readmitted to the unit, and those admitted for dialysis were excluded from the study. The predictive ability of the SAPS 3 index to differentiate survivors and non-survivors was determined by the ROC curve and calibration by the Hosmer-Lemeshow goodness-of-fit test. RESULTS: One thousand three-hundred and ten patients were included in the study. Gastrointestinal surgeries predominated (34.9%). Eighteen was the lower SAPS 3 index and the highest was 154, with a mean of 48.5 +/- 18.1. The predicted and real hospital mortality was 10.3% and 10.8%, respectively; the standardized mortality ratio (SMR) was 1.04 (95%CI = 1.03-1.07). Calibration by the Hosmer and Lemeshow method showed X(2) = 10.47 p = 0.234. The SAPS 3 score that better discriminated survivors and non-survivors was 57, with sensitivity of 75.8% and specificity 86%. Among the patients with SAPS 3 index higher than 57, 73.5% did not survive versus 26.5% who survived (OR= 1.32, 95%CI 1.23-1.42, p < 0.0001). CONCLUSIONS: The SAPS 3 system is valid for the Brazilian population of surgical patients, being a useful indicator of critical patients and to determine greater care in this group.

Aplicabilidade do escore fisiológico agudo simplificado (SAPS 3) em hospitais brasileiros / Aplicabilidad de la puntuación fisiológica aguda simplificada (SAPS 3) en hospitales brasileños / Applicability of the simplified acute physiology score (SAPS 3) in brazilian hospitals

Justificativa e objetivos: O sistema prognóstico SAPS 3 (Simplified Acute Physiology Score 3) é composto de 20 variáveis, representadas por escore fisiológico agudo e avaliação do estado prévio, visando estabelecer índice preditivo de mortalidade para pacientes admitidos em unidades de terapia intensiva (UTI). O estudo teve objetivo de validar este sistema e verificar o poder discriminatório deste índice em pacientes cirúrgicos do Brasil. Método: Estudo prospectivo, realizado em duas UTI especializadas em pacientes cirúrgicos de dois diferentes hospitais, no período de um ano, excluiuse pacientes com idade inferior a 16 anos, que permaneceram tempo inferior a 24 horas na UTI, readmitidos e aqueles admitidos para procedimento dialítico. A habilidade preditiva do índice SAPS 3 em diferenciar sobreviventes e não sobreviventes foi verificada utilizando curva ROC e a calibração pelo teste Hosmer-Lemeshow goodness-of-fit. Resultados: Foram incluídos no estudo 1.310 pacientes. Operações gastrintestinais foram predominantes (34,9 por cento). O menor valor do índice SAPS 3 foi 18 e o maior 154, média de 48,5 ± 18,1. A mortalidade hospitalar prevista e real foi de 10,3 por cento e de 10,8 por cento, respectivamente, razão de mortalidade padronizada (SMR) foi 1,04 (IC95 por cento = 1,03-1,07). A calibração pelo método Hosmer e Lemeshow mostrou X² = 10,47 p = 0,234. O valor do escore SAPS 3 que melhor discriminou sobreviventes e não sobreviventes foi 57, com sensibilidade de 75,8 por cento e especificidade de 86 por cento. Dos pacientes com índice SAPS 3 maior que 57, 73,5 por cento não sobreviveram versus 26,5 por cento de sobreviventes (OR = 1,32 IC95 por cento 1,23 - 1,42, p < 0,0001). Conclusões: O sistema SAPS 3 é válido na população brasileira de pacientes cirúrgicos, sendo útil para indicar pacientes graves e determinar maiores cuidados neste grupo.

Background and objectives: The SAPS 3 (Simplified Acute Physiology Score 3) prognostic system is composed of 20 parameters, represented by an acute physiology score and assessment of the previous status, aimed at establishing a predictive mortality index for patients admitted to intensive care units (ICU). The objective of this study was to validate this system and determine its discriminatory power in surgical patients in Brazil. Methods: This is a prospective study undertaken in two surgical ICUs of two different hospitals over a one-year period; patients younger than 16 years, who stay at the ICU for less than 24 hours, readmitted to the unit, and those admitted for dialysis were excluded from the study. The predictive ability of the SAPS 3 index to differentiate survivors and non-survivors was determined by the ROC curve and calibration by the Hosmer-Lemeshow goodness-of-fit test. Results: One thousand three-hundred and ten patients were included in the study. Gastrointestinal surgeries predominated (34.9 percent). Eighteen was the lower SAPS 3 index and the highest was 154, with a mean of 48.5 ± 18.1. The predicted and real hospital mortality was 10.3 percent and 10.8 percent, respectively; the standardized mortality ratio (SMR) was 1.04 (95 percentCI = 1.03-1.07). Calibration by the Hosmer and Lemeshow method showed X² = 10.47 p = 0.234. The SAPS 3 score that better discriminated survivors and non-survivors was 57, with sensitivity of 75.8 percent and specificity 86 percent. Among the patients with SAPS 3 index higher than 57, 73.5 percent did not survive versus 26.5 percent who survived (OR= 1.32, 95 percentCI 1.23-1.42, p < 0.0001). Conclusions: The SAPS 3 system is valid for the Brazilian population of surgical patients, being a useful indicator of critical patients and to determine greater care in this group.

Justificativa y objetivos: El sistema de pronóstico SAPS 3 (Simplified Acute Physiology Score 3), se compone de 20 variables, representadas por una puntuación fisiológica aguda y por una evaluación del estado previo, con el fin de establecer el índice predictivo de mortalidad para los pacientes admitidos en las unidades de cuidados intensivos (UCI). El estudio quiso validar ese sistema y verificar el poder discriminatorio de ese índice en pacientes quirúrgicos de Brasil. Método: Estudio prospectivo, realizado en dos UCIs especializadas en pacientes quirúrgicos de dos hospitales diferentes, en el período de un año, donde quedaron excluidos pacientes con edad inferior a los 16 años, que permanecieron un tiempo inferior a 24 horas en la UCI, los readmitidos y los que fueron admitidos para el procedimiento de diálisis. La habilidad predictiva del índice SAPS 3 para diferenciar a los sobrevivientes y a los no sobrevivientes, se constató utilizando la curva ROC y la calibración a través del test Hosmer-Lemeshow goodness-of-fit. Resultados: Se incluyeron en el estudio 1310 pacientes. Las operaciones gastrointestinales fueron predominantes (34,9 por ciento). El menor valor del índice SAPS 3 fue 18 y el mayor 154, un promedio de 48,5 ± 18,1. La mortalidad hospitalaria prevista y real alcanzó los 10,3 por ciento y 10,8 por ciento respectivamente, la razón de mortalidad estandarizada (SMR) fue 1,04 (IC95 por ciento = 1,03-1,07). La calibración por el método Hosmer y Lemeshow mostró X2 = 10,47 p = 0,234. El valor de la puntuación SAPS 3 que desglosó mejor a los sobrevivientes y a los no sobrevivientes fue 57, con una sensibilidad de un 75,8 por ciento y una especificidad de un 86 por ciento. De los pacientes con el índice SAPS 3 mayor que 57, un 73,5 por ciento no sobrevivieron contra un 26,5 por ciento de sobrevivientes (OR = 1,32 IC95 por ciento 1,23 – 1,42, p < 0,0001). Conclusiones: El sistema SAPS 3 es valido en la población brasileña...

Metabolic and genetic diversity of mesophilic and thermophilic bacteria isolated from composted municipal sludge on poly-epsilon-caprolactones.

Thirty mesophilic and thermophilic bacteria were isolated from thermobiotically digested sewage sludge in culture medium supplemented with poly-epsilon-caprolactone (PCL). The ability of each purified isolate to degrade PCL and to produce polymer-degrading extracellular enzymes was assessed. Isolates were characterized based on random amplified polymorphic DNA (RAPD), 16S rDNA sequence-based phylogenetic affiliation and carbohydrate-based nutritional versatility. Mesophilic isolates with ability to degrade PCL were attributed to the genera Acinetobacter, Burkholderia, Pseudomonas, and Staphylococcus. Thermophilic isolates were members of the genus Bacillus. Despite the restricted phylogenetic and genotypic diversity observed for thermophiles, their metabolic versatility and wide range of growth temperatures suggest an important activity of these organisms during the whole composting process.