A gap in nitrous oxide emission reporting complicates long-term climate mitigation.

Nitrous oxide (N2O) is an important greenhouse gas (GHG) that also contributes to depletion of ozone in the stratosphere. Agricultural soils account for about 60% of anthropogenic N2O emissions. Most national GHG reporting to the United Nations Framework Convention on Climate Change assumes nitrogen (N) additions drive emissions during the growing season, but soil freezing and thawing during spring is also an important driver in cold climates. We show that both atmospheric inversions and newly implemented bottom-up modeling approaches exhibit large N2O pulses in the northcentral region of the United States during early spring and this increases annual N2O emissions from croplands and grasslands reported in the national GHG inventory by 6 to 16%. Considering this, emission accounting in cold climate regions is very likely underestimated in most national reporting frameworks. Current commitments related to the Paris Agreement and COP26 emphasize reductions of carbon compounds. Assuming these targets are met, the importance of accurately accounting and mitigating N2O increases once CO2 and CH4 are phased out. Hence, the N2O emission underestimate introduces additional risks into meeting long-term climate goals.

Linking soil profile N2O concentration with surface flux in a cotton field under drip fertigation.

It remains unclear how the source and rate of nitrogen (N) fertilizers affect N2O concentration and effluxes along the soil profile under the drip-fertigated agricultural system. A plot-based field study was performed in 2017 and 2018 in a cotton field in arid northwestern China, with an objective to elucidate the impact of the applications of conventional urea (Urea), polymer-coated urea (ESN) and stabilized urea (SuperU) at rates of 120 and 240 kg N ha-1 on concentration and efflux of N2O in the soil profile and its relationship with N2O surface emissions. The in-situ N2O concentrations at soil depths of 5, 15, 30 and 60 cm were measured and used to estimate soil profile N2O effluxes. Estimates of surface N2O flux using the concentration gradient-based (GM) were compared with those measured using the chamber-based (CM) method. In both years, soil N2O concentrations at all depths increased in response to basal N application at planting or in-season fertigation events. However, N rate or source did not affect soil N2O concentrations or effluxes at each depth. Surface emissions of N2O were mostly associated with that presented in the top layer of 0-15 cm. Surface N2O efflux determined by GM was poorly or not associated with those of chamber measurements, which was attributed to the low N2O production restricted by soil moisture condition under the drip-fertigated condition. These results highlight the challenge of applying the enhanced efficiency N fertilizer products in the drip-fertigated agricultural system.

A global meta-analysis of nitrous oxide emission from drip-irrigated cropping system.

Drip irrigation is a useful practice to enhance water and fertilizer nitrogen (N) use efficiency. However, the use of drip irrigation to mitigate nitrous oxide (N2 O) emissions in agricultural systems globally is uncertain. Here, we performed a global meta-analysis of 485 field measurements of N2 O emissions from 74 peer-reviewed publications prior to March 2021, to quantify the fertilizer-induced N2 O emission factor (EF) of drip irrigation and examine the influencing factors of climate, crop, soil properties, and source and rate of fertilizer N application. The results showed that drip irrigation reduced (p < 0.05) N2 O emissions by 32% and 46% compared to furrow and sprinkler irrigation systems, respectively. The overall average EF with drip irrigation was 0.35%, being two-thirds lower than the IPCC Tier I default value of 1% (kg N2 O-N/kg added fertilizer N). The EF was not significantly affected by climate, crop, soil texture, soil organic carbon content, and pH. The EF was also not significantly (p > 0.05) affected by synthetic N fertilizer source despite a lower numerical value with enhanced efficiency than conventional fertilizers. The EF increased significantly (p < 0.001) with N addition rate in a binomial distribution. Using the IPCC default EF overestimated N2 O emissions inventories for drip-irrigated cropping systems by 7614 and 13,091 Mg per year for China and the globe, respectively. These results indicate that drip irrigation should be recommended as an essential N2 O mitigation strategy for irrigated crop production.

Enhanced efficiency nitrogen fertilizers were not effective in reducing N2O emissions from a drip-irrigated cotton field in arid region of Northwestern China.

Drip irrigation is an effective water-saving strategy for crop production in arid regions. However, limited information is available on how fertilizer nitrogen (N) management affects soil nitrous oxide (N2O) emission under drip irrigation. A two-year (2017-2018) field experiment was conducted in arid northwestern China to test management options of fertilizer N to reduce N2O emission and improve NUE of cotton (Gossypium hirsutum L.) under drip irrigation. Treatment included a factorial design of rate (120, 240 kg N ha-1) and source of N fertilizer (Urea, polymer-coated urea-ESN, stabilized urea with nitrification and urease inhibitors-SuperU), and an unfertilized Control. Urea was split-applied with irrigation water (fertigation) whereas ESN and SuperU were all side-banded at pre-plant. Crop yield and N uptake, soil mineral N concentrations, soil temperature and moisture, and N2O fluxes were determined. Across the two growing seasons, a single pre-plant application with ESN or SuperU significantly increased growing season cumulative N2O emissions (Æ©N2O) by 29-47% and applied N-scaled emission factor (EF) by 57-83% compared to urea fertigation, irrespectively of application rate. In contrast, cotton yield, agronomic NUE, apparent N recovery (ANR), and yield-based N2O emission intensity (EI) were not affected by N source. Reducing N rate from 240 to 120 kg N ha-1 significantly decreased Æ©N2O by 35% in 2017 and 36% in 2018 while simultaneously reduced cotton yield in both years. The increased N2O emissions with ESN and SuperU were attributed to greater availability of inorganic N resulted from one-time application at pre-plant and higher soil temperature. We concluded that fertigation with urea at the recommended rate is the best option to ensure agronomic productively and agronomic NUE with minimal risk of N2O emissions. In contrast, the benefit of enhanced efficiency N fertilizer is limited and recommendation on using of these products is challenging for arid croplands under drip irrigation.

Agronomic evaluation of polymer-coated urea and urease and nitrification inhibitors for cotton production under drip-fertigation in a dry climate.

Interest in the use of enhanced-efficiency nitrogen (N) fertilizers (EENFs) has increased in recent years due to their potential to increase crop yield and reduce environmental N loss. Drip-fertigation is widely used for crop production in arid regions to improve water and nutrient use efficiency whereas the effectiveness of EENFs with drip irrigation remains unclear. A field experiment was conducted in 2015 and 2016 to examine the effects of EENFs on yield, N use and quality of cotton (Gossypium hirsutum) grown under drip-fertigation in arid NW China. Treatments included an unfertilized control and application of 240 kg N ha-1 by polymer-coated urea (ESN), urea alone, or urea plus urease (NBPT) and nitrification (DCD) inhibitors. ESN was all banded in the plant row at planting, whereas urea was applied with 20% N banded at planting and 80% N by six fertigation events over the growing season. Results showed there was generally no treatment effect on seed and lint yield, N concentration or allocations, N recovery efficiency and fiber quality index of cotton. A lack of treatment effect could be due to N supplied with drip-fertigation better synthesized with crop N needs and the relatively high soil native NO3- availability, which hindered the effect of polymer-coated urea and double inhibitors. These results highlight the challenge of the employment of EENFs products for drip-fertigation system in arid area. Further research is required to define the field conditions under which the agronomic efficiency of EENFs products may be achieved in accordance with weather conditions.

Manure application increased denitrifying gene abundance in a drip-irrigated cotton field.

Application of inorganic nitrogen (N) fertilizer and manure can increase nitrous oxide (N2O) emissions. We tested the hypothesis that increased N2O flux from soils amended with manure reflects a change in bacterial community structure and, specifically, an increase in the number of denitrifiers. To test this hypothesis, a field experiment was conducted in a drip-irrigated cotton field in an arid region of northwestern China. Treatments included plots that were not amended (Control), and plots amended with urea (Urea), animal manure (Manure) and a 50/50 mix of urea and manure (U+M). Manure was broadcast-incorporated into the soil before seeding while urea was split-applied with drip irrigation (fertigation) over the growing season. The addition treatments did not, as assessed by nextgen sequencing of PCR-amplicons generated from rRNA genes in soil, affect the alpha diversity of bacterial communities but did change the beta diversity. Compared to the Control, the addition of manure (U+M and Manure) significantly increased the abundance of genes associated with nitrate reduction (narG) and denitrfication (nirK and nosZ). Manure addition (U+M and Manure) did not affect the nitrifying enzyme activity (NEA) of soil but resulted in 39-59 times greater denitrifying enzyme activity (DEA). In contrast, urea application had no impact on the abundances of nitrifier and denitrifier genes, DEA and NEA; likely due to a limitation of C availability. DEA was highly correlated (r = 0.70-0.84, P < 0.01) with the abundance of genes narG, nirK and nosZ. An increase in the abundance of these functional genes was further correlated with soil NO3 -, dissolved organic carbon, total C, and total N concentrations, and soil C:N ratio. These results demonstrated a positive relationship between the abundances of denitrifying functional genes (narG, nirK and nosZ) and denitrification potential, suggesting that manure application increased N2O emission by increasing denitrification and the population of bacteria that mediated that process.

Presence of spring-thaw N2O emissions are not linked to functional gene abundance in a drip-fertigated cropped soil in arid northwestern China.

Spring-thaw represents a significant source for nitrous oxide (N2O) emissions from fertilized croplands in temperate regions. In this study, we present surface N2O fluxes, soil-profile N2O concentrations at 5, 15, 30 and 60 cm depths along with the abundance of nitrifiers and denitrifiers over the winter and spring-thaw periods in an arid, drip- fertigated cotton field, which had received spring application of 240 kg N ha-1 as urea alone (Urea), polymer-coated urea (ESN), and urea plus urease and nitrification inhibitors. Nitrous oxide emissions from December to April were generally unaffected by fertilizer treatments with a cumulative average of 186 g N ha-1, accounting for 39% of the annual N2O emissions. Emission peaks occurred at spring-thaw and coincided with increasing soil-profile N2O concentrations at all depths, suggesting the burst in N2O fluxes was due to new N2O production, rather than a physical release of N2O trapped in the soil profiles over winter. The abundance of nitrifier and denitrifier genes changed over the winter and spring-thaw periods but was not affected by fertilizer treatments from the previous spring, suggesting the abundance of N2O-producing microorganism was more controlled by environmental conditions than N sources applied in the previous spring. The daily N2O flux rate from December to April was positively correlated with soil temperature, water-filled pore space, and denitrifying enzyme activity, but not with the gene copy number of AOA, AOB, narG, nirS, nirK and nosZ, indicating that variation in the abundance of these genes was not contributing to the N2O emissions. These results suggest that N2O emissions in spring-thaw are substantial for drip-fertigated croplands in the arid regions and should be considered in the annual budgets. The environmental factors such as soil temperature and moisture are likely more important than the copy-numbers of N2O-producing functional genes in driving the variability in spring-thaw emissions.

Molecular Characterization and Phylogeny of Ditylenchus weischeri from Cirsium arvense in the Prairie Provinces of Canada.

Ditylenchus weischeri that parasitizes the weed Cirsium arvense (L.) Scop., 1772, (creeping thistle) was described in 2011 from Russia based on their morphology, ITS-RFLP analysis, and Hsp 90 gene sequence of a few individuals and one field collection of the plant. More recently, we found C. arvense parasitized by D. weischeri in the Prairie Provinces of Canada. Plant host preference for D. weischeri was also distinct from D. dipsaci (Kühn) Filipjev, 1936. In the current study, a comprehensive molecular analysis of many D. weischeri specimens from Canada is presented. Individuals from 41 C. arvense or yellow pea grain samples with seeds of C. arvense from the Prairie Provinces were sequenced for the internal transcribed spacer (ITS rDNA), large subunit (LSU) D2D3 28S rDNA, partial segment of small subunit (SSU) 18S rDNA, and the heat shock protein Hsp 90 gene. The analysis also included D. weischeri individuals from C. arvense from Russia and garlic with D. dipsaci from the Provinces of Ontario and Quebec in Canada. Available sequence data of Ditylenchus species retrieved from GenBank were used to phylogenetically position this species within the genus Ditylenchus . In all studied genes, several single-nucleotide polymorphisms between the Canadian D. weischeri and both Russian haplotype and individuals of D. weischeri from C. arvense from Russia were found. The sequences of ITS rDNA, LSU D2D3 28S rDNA, and Hsp 90 were used to construct separate dendrograms. For each of the three genes examined, D. weischeri was grouped separately from the other Ditylenchus . Ditylenchus samples from C. arvense was positioned to a single clade such as D. weischeri and distinct from D. dipsaci . With past reports of plant host preference and morphology, the results of this study provide further evidence for the fact that D. weischeri is distinct to be separated from D. dipsaci . Furthermore, minor differences in molecular divergence and morphology to the Russian haplotype and limited symptoms of disease on C. arvense in Prairie Canada suggest the Canadian and Russian populations of D. weischeri may be diverging.

Influence of Temperature on Development and Reproduction of Ditylenchus weischeri and D. dipsaci on Yellow Pea.

The ability of the recently described stem nematode of creeping thistle (Cirsium arvense L.), Ditylenchus weischeri, to develop on and parasitize yellow pea (Pisum sativum L.) is uncertain. The current study examined nematode life-stage progression and generation time on yellow pea as affected by temperature with the related pest, D. dipsaci, used as a positive control. Relationships for body length of the two nematode species and life stage were unaffected by rearing on plant hosts compared with carrot disks. Then plant-reared J4 individuals of both nematode species were used to determine the effect of temperature (17, 22, and 27°C) on life-stage progression and minimum generation time with yellow pea. At 17 and 22°C, D. weischeri J4 individuals progressed to only the adult stage whereas, at 27°C, the minimum generation time from J4 to J4 was 30 days or 720 growing degree-days. The minimum generation time for D. dipsaci was 24, 18, and 22 days or 336, 342, and 528 growing degree-days at 17, 22, and 27°C, respectively. The results indicate that development of D. weischeri is temperature dependent and reproduction is unlikely on yellow pea in the Canadian Prairies, where mean daily air temperatures of 27°C are rare and not sustained.

Lower Nitrous Oxide Emissions from Anhydrous Ammonia Application Prior to Soil Freezing in Late Fall Than Spring Pre-Plant Application.

Fall application of anhydrous ammonia in Manitoba is common but its impact on nitrous oxide (NO) emissions is not well known. A 2-yr study compared application before freeze-up in late fall to spring pre-plant application of anhydrous ammonia on nitrous oxide (NO) emissions from a clay soil in the Red River Valley, Manitoba. Spring wheat ( L.) and corn ( L.) were grown on two 4-ha fields in 2011 and 2012, respectively. Field-scale flux of NO was measured using a flux-gradient micrometeorological approach. Late fall treatment did not induce NO emissions soon after application or in winter likely because soil was frozen. Application time did alter the temporal pattern of emissions with late fall and spring pre-plant applications significantly increasing median daily NO flux at spring thaw and early crop growing season, respectively. The majority of emissions occurred in early growing season resulting in cumulative emissions for the crop year being numerically 33% less for late fall than spring pre-plant application. Poor yield in the first year with late fall treatment occurred because of weed and volunteer growth with delayed planting. Results show late fall application of anhydrous ammonia before freeze-up increased NO emissions at thaw and decreased emissions for the early growing season compared to spring pre-plant application. However, improved nitrogen availability of late fall application to crops the following year is required when planting is delayed because of excessive moisture in spring.

Predicting Phosphorus Release from Anaerobic, Alkaline, Flooded Soils.

Anaerobic conditions induced by prolonged flooding often lead to an enhanced release of phosphorus (P) to floodwater; however, this effect is not consistent across soils. This study aimed to develop an index to predict P release potential from alkaline soils under simulated flooded conditions. Twelve unamended or manure-amended surface soils from Manitoba were analyzed for basic soil properties, Olsen P (Ols-P), Mehlich-3 extractable total P (M3P), Mehlich-3 extractable molybdate-reactive P (M3P), water extractable P (WEP), soil P fractions, single-point P sorption capacity (P), and Mehlich-3 extractable Ca (M3Ca), and Mg (M3Mg). Degree of P saturation (DPS) was calculated using Ols-P, M3P or M3P as the intensity factor, and an estimated adsorption maximum based on either P or M3Ca + M3Mg as the capacity factor. To develop the model, we used the previously reported floodwater dissolved reactive P (DRP) concentration changes during 8 wk of flooding for the same unamended and manured soils. Relative changes in floodwater DRP concentration (DRP), calculated as the ratio of maximum to initial DRP concentration, ranged from 2 to 15 across ten of the soils, but were ≤1.5 in the two soils with the greatest clay content. Partial least squares analysis indicated that DPS3 calculated using M3P as the intensity factor and (2 × P) + M3P as the capacity factor with clay percentage can effectively predict DRP ( = 0.74). Results suggest that P release from a soil to floodwater may be predicted using simple and easily measurable soil properties measured before flooding, but validation with more soils is needed.

Host Preference and Seedborne Transmission of Ditylenchus weischeri and D. dipsaci on Select Pulse and Non-Pulse Crops Grown in the Canadian Prairies.

The stem nematode Ditylenchus weischeri was recently reported on creeping thistle (Cirsium arvense) in Canada. Two greenhouse studies examined host suitability of crops commonly grown in the Canadian Prairies for D. weischeri and the closely related parasite of many crops, D. dipsaci. In the first study, common pulse crops (yellow pea, chickpea, common bean, and lentil), spring wheat, canola, creeping thistle, and garlic were evaluated. Plant biomass and reproductive factor (Rf = nematode recovered/inoculated) 8 weeks postinoculation were used to determine host suitability. Creeping thistle biomass was reduced by D. weischeri whereas D. dipsaci reduced biomass of four of five pea and two of three bean varieties. Two pea varieties were weak hosts for D. weischeri, with Rf slightly >1. D. weischeri aggressively reproduced on creeping thistle (Rf = 5.4). D. dipsaci reproduced aggressively on garlic (Rf = 6.4; a known host), moderately on pea varieties (Rf > 2), and weakly on chickpea and bean (Rf > 1). In the second study, using creeping thistle and yellow pea, D. weischeri was recovered from aboveground parts of the plants and seed of the former and D. dipsaci from the later. The results show that D. weischeri parasitizes creeping thistle but not other crops and that D. weischeri host preference is different from that of D. dipsaci.

Occurrence of Ditylenchus weischeri and Not D. dipsaci in Field Pea Harvest Samples and Cirsium arvense in the Canadian Prairies.

The stem nematode, a parasite of the herbaceous perennial weed, Cirsium arvense (L.) Scop. and identified as Ditylenchus dipsaci (Kühn) Filipjev, was reported in the Canadian prairies in 1979. Recently, D. weischeri Chizhov parasitizing Cirsium arvense was described in Russia, and it has been shown that this species is not an agricultural pest. In this study, we examined Ditylenchus species found in field pea (Pisum sativum L.) grain harvest samples in 2009 and 2010 and from C. arvense shoots in pea fields in the Saskatchewan, Alberta, and Manitoba provinces. Samples from 538 fields (mainly yellow pea) were provided by 151 growers throughout the main pea-growing area of the Canadian prairies. Of the samples collected, 2% were positive for Ditylenchus. The population density of the nematode ranged between 4 and 1,500 nematodes kg(-1) pea harvest sample and related to presence of C. arvense seeds. Positive samples occurred in 2009 but not in 2010 and were from throughout the pea-growing area of the Canadian prairies and not related to cropping history. C. arvense collected from yellow pea fields in Saskatchewan and Manitoba, but not Alberta, were infested with Ditylenchus. Morphological and molecular (ITS-PCR-RFLP) traits indicated that this species belongs to D. weischeri. The results indicated the stem nematode found in yellow pea grain is D. weischeri which resided with C. arvense seeds and debris to pea samples. Unlike D. dipsaci, D. weischeri is not a nematode pest of economic importance; therefore, its presence in the pea harvest samples was not a concern.

Soil nematode responses to crop management and conversion to native grasses.

Soil nematode community response to treatments of three, four-year crop rotations (spring wheat-pea-spring wheat-flax, spring wheat-green manure-spring wheat-flax, and spring wheat-alfalfa-alfalfa-flax) under conventional and organic management, and native tall grass restoration (restored prairie) were assessed in June 2003, and July and August 2004. The research site was the Glenlea Long-term Rotation and Crop Management Study, in the Red River Valley, Manitoba, established in 1992. The nematode community varied more with sample occasion than management and rotation. The restored prairie favored high colonizer-persister (c-p) value omnivores and carnivores, and fungivores but less bacterivores. The restored prairie soil food web was highly structured, mature and low-to-moderately enriched as indicated by structure (SI), maturity (MI) and enrichment (EI) index values, respectively. Higher abundance of fungivores and channel index (CI) values suggested fungal-dominated decomposition. Nematode diversity was low even after more than a decade of restoration. A longer time may be required to attain higher diversity for this restored fragmented prairie site distant from native prairies. No consistent differences were found between organic and conventional management for nematode trophic abundance, with the exception of enrichment opportunists of the c-p 1 group which were favored by conventional management. Although EI was lower and SI was higher for organic than conventional their absolute values suggested decomposition channels to be primarily bacterial, and fewer trophic links with both management scenarios. A high abundance of fungivores in the rotation including the green manure indicates greater fungal decomposition.

Reflections on plant and soil nematode ecology: past, present and future.

The purpose of this review is to highlight key developments in nematode ecology from its beginnings to where it stands today as a discipline within nematology. Emerging areas of research appear to be driven by crop production constraints, environmental health concerns, and advances in technology. In contrast to past ecological studies which mainly focused on management of plant-parasitic nematodes, current studies reflect differential sensitivity of nematode faunae. These differences, identified in both aquatic and terrestrial environments include response to stressors, environmental conditions, and management practices. Methodological advances will continue to influence the role nematodes have in addressing the nature of interactions between organisms, and of organisms with their environments. In particular, the C. elegans genetic model, nematode faunal analysis and nematode metagenetic analysis can be used by ecologists generally and not restricted to nematologists.

Contribution of urine and dung patches from grazing sheep to methane and carbon dioxide fluxes in an inner mongolian desert grassland.

The effects of sheep urine and dung patches on methane (CH4) and carbon dioxide (CO2) fluxes were investigated during the summer-autumn in 2010, to evaluate their contribution to climate change in a desert grassland in Inner Mongolia, China. Results indicate that the cumulative CH4 emissions for dung patches, urine patches and control plots were - -0.076, -0.084, and -0.114 g/m(2) and these were net CH4 sinks during the measured period. The level of CH4 intake from urine and dung plots decreased 25.7%, and 33.3%, respectively, compared with a control plot. CO2 fluxes differed (p<0.01) in urine plots, with an average of 569.20 mg/m(2)/h compared with control plots (357.62 mg/m(2)/h) across all sampling days. Dung patches have cumulative CO2 emissions that were 15.9% higher compared with the control during the 55-d period. Overall, sheep excrement weakened CH4 intake and increased CO2 emissions.

Mycorrhizal colonization and grain Cd concentration of field-grown durum wheat in response to tillage, preceding crop and phosphorus fertilization.

BACKGROUND: A 3-year field trial was conducted to investigate the effect of agricultural management practices including tillage, preceding crop and phosphate fertilization on root colonization by arbuscular mycorrhizal (AM) fungi and grain cadmium (Cd) concentration of durum wheat (Triticum turgidum L.). The relationship between grain Cd and soil and plant variables was explored to determine the primary factors affecting grain Cd concentration. RESULTS: Mycorrhizal colonization of the roots was reduced by conventional tillage or when the preceding crop was canola (Brassica napus L.), compared to minimum tillage or when the preceding crop was flax (Linum usitatissimum L.). In contrast, grain Cd was not consistently affected by any treatment. Grain Cd was generally below the maximum permissible concentration (MPC) of 100 microg Cd kg(-1) proposed by WHO. Grain Cd varied substantially from year to year, and could be predicted with 70% of variance accounted for by using the model: grain Cd concentration = - 321.9 + 44.5x ln(grain yield) + 0.26x soil DTPA-Cd + 182.5x soil electrical conductivity (EC)- 0.98x grain Zn concentration. CONCLUSIONS: These common agricultural management practices had no effect on grain Cd concentration in durum wheat though they impacted mycorrhizal colonization of roots. Grain yield and to a lesser extent soil conditions of EC and DTPA-Cd and grain Zn influenced grain Cd, whereas mycorrhizal colonization levels did not.

Examination of Salmonella and Escherichia coli translocation from hog manure to forage, soil, and cattle grazed on the hog manure-treated pasture.

Use of hog (Sus scrofa) manure as a fertilizer is a practical solution for waste re-utilization, however, it may serve as a vehicle for environmental and domestic animal contamination. Work was conducted to determine whether pathogens, naturally present in hog manure could be detected in cattle (Bos taurus) grazed on the manure-treated pasture, and whether forage contamination occurred. During two 3 mo summer trials manure was applied to yield < or = 124 kg available N per hectare in a single spring or split spring and fall application. Samples of hog manure, forage, soil, and cattle feces were analyzed for naturally occurring Salmonella, Yersinia enterocolitica, and Escherichia coli. To follow movement of Salmonella in the environment isolates were identified to serovar and serotyped. Transfer of E. coli from hog manure to soil and cattle was examined by randomly amplified polymorphic DNA (RAPD) analysis of >600 E. coli isolates. While Y. enterocolitica was absent from all samples, in both years S. enterica Derby and S. enterica Krefeld were found in most hog manure samples, but were only on forage samples in the second year. Salmonella enterica Typhimurium, absent from hog manure was present on some forage in the first year. Cattle feces and soil samples were consistently Salmonella negative. These contaminations could not be traced to manure application. During this study, Salmonella and E. coli found in hog manure had different RAPD genomic profiles from those found in the feces of cattle grazing on manure-treated pasture.

Salmonella survival in manure-treated soils during simulated seasonal temperature exposure.

Addition of animal manure to soil can provide opportunity for Salmonella contamination of soil, water, and food. This study examined how exposure of hog manure-treated loamy sand and clay soils to different simulated seasonal temperature sequences influenced the length of Salmonella survival. A six-strain cocktail of Salmonella serovars (Agona, Hadar, Heidelberg, Montevideo, Oranienburg, and Typhimurium) was added to yield 5 log cfu/g directly to about 5 kg of the two soils and moisture adjusted to 60 or 80% of field capacity (FC). Similarly, the Salmonella cocktail was mixed with fresh manure slurry from a hog nursery barn and the latter added to the two soils at 25 g/kg to achieve 5 log cfu/g Salmonella. Manure was mixed either throughout the soil or with the top kilogram of soil and the entire soil volume was adjusted to 60 or 80% FC. Soil treatments were stored 180 d at temperature sequences representing winter to summer (-18, 4, 10, 25 degrees C), spring to summer (4, 10, 25, 30 degrees C), or summer to winter (25, 10, 4, -18 degrees C) seasonal periods with each temperature step lasting 45 d. Samples for Salmonella recovery by direct plating or enrichment were taken at 0, 7, and 15 d post-inoculation and thereafter at 15-d intervals to 180 d. Salmonella numbers decreased during application to soil and the largest decreases occurred within the first week. Higher soil moisture, manure addition, and storage in the clay soil increased Salmonella survival. Salmonella survived longest (> or = 180 d) in both soils during summer-winter exposure but was not isolated after 160 d from loamy sand soil exposed to other seasonal treatments. For all but one treatment decimal reduction time (DRT45d) values calculated from the first 45 d after application were < or = 30 d and suggested that a 30-d delay between field application of manure in the spring or fall and use of the land would provide reasonable assurance that crop and animal contamination by Salmonella would be minimized.

Liquid Swine Manure Can Kill Verticillium dahliae Microsclerotia in Soil by Volatile Fatty Acid, Nitrous Acid, and Ammonia Toxicity.

ABSTRACT In previous studies, liquid swine manure (LSM) was sometimes shown to reduce Verticillium wilt of potato caused by Verticillium dahliae. We also observed that microsclerotia of this fungus died within 1 day, or between 3 and 6 weeks, after addition of LSM to some acid soils and within 1 week in some alkaline soils. In this study, we demonstrated that a volatile fatty acid (VFA) mixture with an identical concentration of VFAs as that found in an effective LSM reduced germination in an acid soil (pH 5.1) to the same extent as the LSM after 1 day of exposure. Germination was reduced by 45, 75, and 90% in the 10, 20, and 40% ([wt/wt] soil moisture) treatments, respectively, with the latter being equivalent to an application of 80 hl/ha. Addition to this acid soil of 19 LSMs (30% [wt/wt] soil moisture) collected from different producers resulted in complete kill of microsclerotia with 12 manures. Effective manures had a total concentration of nonionized forms of VFAs in soil solution of 2.7 mM or higher. In some acid soils (pH 5.8), addition of LSM (40% [wt/wt] soil moisture) did not kill microsclerotia until 3 to 6 weeks later. Here, a reduction in viability of microsclerotia was attributed to the accumulation of 0.06 mM nitrous acid in the soil solution at 4 weeks. When an LSM was added (40% [wt/wt] soil moisture) to an alkaline soil (pH 7.9) where VFAs are not toxic, microsclerotia germination was reduced by 80% after 1 week. Here the pH increased to 8.9 and the concentration of ammonia reached 30 mM in the soil solution. An ammonium chloride solution having an equivalent concentration of ammonium as the manure was shown to have the same spectrum of toxicity as the manure in assays ranging from pH 7 to 9, both in solutions and above the solutions. At pH 9, the concentration of ammonia reached 18 mM and 100% mortality of microsclerotia occurred. Thus, in acid soils, LSM can kill microsclerotia of V. dahliae by VFA and/or nitrous acid toxicity and in alkaline soils by ammonia toxicity. In order to take advantage of these mechanisms for disease reduction, the manure chemical composition, rate of addition, and soil characteristics need to be determined for each instance of use.