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1.
Clin Oncol (R Coll Radiol) ; 34(6): 368-375, 2022 06.
Article in English | MEDLINE | ID: mdl-34930691

ABSTRACT

AIMS: The associations between prognostic awareness, acceptance of illness and psychological outcomes (anxiety, depression and spiritual well-being) remain unclear. This study examined the associations between prognostic awareness and various psychological outcomes and how they can be moderated by patient acceptance of illness (cancer). MATERIALS AND METHODS: In total, 1184 patients with stage IV solid cancer were recruited at major public hospitals across four Asian countries (China, India, Sri Lanka, Vietnam). Prognostic awareness and acceptance of illness were assessed through self-reported understanding of treatment intent and acceptance of illness, respectively. Anxiety and depression were assessed using the Hospital Anxiety and Depression Scale, whereas spiritual well-being was measured using the Functional Assessment of Chronic Illness Therapy - Spiritual Well-Being Scale. Multivariate regressions were used to estimate the associations while controlling for patient characteristics. RESULTS: Compared with being unaware of their prognosis (i.e. believing that their cancer is curable), being aware or unsure of their prognosis was associated with higher anxiety and depressive symptoms, and lower spiritual well-being scores. Acceptance of illness moderated these relationships and improved the psychological outcomes. CONCLUSIONS: The results suggest that disclosure of prognostic information should be provided in conjunction with psychological interventions that focus on acceptance of illness.


Subject(s)
Depression , Neoplasms , Anxiety , Depression/epidemiology , Depression/psychology , Humans , India/epidemiology , Neoplasms/therapy , Prognosis , Quality of Life/psychology
2.
Lymphology ; 50(4): 197-202, 2017.
Article in English | MEDLINE | ID: mdl-30248724

ABSTRACT

Upper limb dominance is associated with increased limb volume, however there is a paucity of evidence if this is true for the lower limbs. This study investigated if there is a normative volume difference between the dominant and nondominant leg. Healthy volunteers between the ages of 18-40 years were recruited. Exclusion criteria included previous lower limb surgery, BMI >30, or pregnancy. An experienced lymphedema nurse specialist measured the circumference of each limb at 4 cm intervals from the malleolus to the groin. Measurements were used to calculate volume of each limb in milliliters. 100 (52 male, 48 female) participants met our inclusion criteria. 86% were right leg dominant and 14% left leg dominant. 93% demonstrated an average increased volume of 349 ml (4.5%) in the dominant leg which is statistically significant (p<0.001). Age, sports, and gender did not affect lower limb volumes. This is the first study to show a normative variance in leg volume in healthy individuals, with a greater volume in the dominant leg. This should be taken into consideration when managing and measuring outcomes for patients with conditions resulting in enlarged lower limbs.

5.
J Hand Surg Eur Vol ; 38(9): 992-9, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23348603

ABSTRACT

The wide-awake hand surgery (WAHS) technique involves injecting lidocaine with adrenaline for hand surgical procedures that are done without the use of tourniquets, sedation, regional or general anaesthetic. This is a retrospective review of the first 100 consecutive patients who underwent operations using this technique at our centre. The operations included carpal and cubital tunnel decompression, trapeziectomy, tendon transfer, and tenolysis. A questionnaire adapted from Lalonde's previous work on wide-awake surgery was used to assess patients' experiences. Sixty-five percent of the patients responded to the postal questionnaire, the majority reporting a high satisfaction level. Ninety-one percent of responders reported that the operation was less painful or comparable with a procedure at the dentist; 86% would prefer to be wide-awake if they needed to have hand surgery again, and 90% stated they would recommend WAHS to a friend.


Subject(s)
Anesthetics, Local/administration & dosage , Consciousness , Hand/surgery , Patient Satisfaction , Adult , Aged , Aged, 80 and over , Anxiety/psychology , Epinephrine/administration & dosage , Female , Humans , Injections , Lidocaine/administration & dosage , Male , Middle Aged , Orthopedic Procedures , Pain Measurement , Patient Preference , Retrospective Studies , Surveys and Questionnaires , Vasoconstrictor Agents/administration & dosage , Young Adult
6.
Am J Transplant ; 12(12): 3437-40, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22974244

ABSTRACT

Invasive fungal diseases are a major cause of death in renal allograft recipients. We previously reported that adjunctive recombinant human interferon-γ therapy has clinical utility for invasive fungal diseases after renal transplantation. We have now developed a rapid peripheral blood-based quantitative real-time PCR assay that enables accurate profiling of cytokine imbalances. Our preliminary studies in renal transplant patients with invasive fungal diseases suggest that they fail to mount an adequate interferon-γ response to the fungal infection. In addition, they have reduced IL-10 and increased TNF-α when compared to stable renal transplant patients. These preliminary cytokine profiling-based observations provide a possible explanation for the therapeutic benefit of adjunctive human interferon-γ therapy in renal allograft recipients with invasive fungal diseases.


Subject(s)
Biomarkers/blood , Cytomegalovirus Infections/diagnosis , Graft Rejection/diagnosis , Interferon-gamma/blood , Kidney Transplantation/adverse effects , Case-Control Studies , Cytomegalovirus/genetics , Cytomegalovirus Infections/genetics , Cytomegalovirus Infections/microbiology , DNA/blood , DNA/genetics , Follow-Up Studies , Graft Rejection/blood , Graft Rejection/etiology , Humans , Interferon-gamma/genetics , Interleukin-10/blood , Interleukin-10/genetics , Real-Time Polymerase Chain Reaction , Transplantation, Homologous , Tumor Necrosis Factor-alpha/blood , Tumor Necrosis Factor-alpha/genetics
9.
Am J Transplant ; 10(8): 1796-803, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20353472

ABSTRACT

The incidence of invasive fungal infections (IFIs) in nonneutropenic solid organ transplant patients is increasing. We report our clinical experience with the use of interferon-gamma (IFN-gamma) immunotherapy in seven renal transplant patients who developed life threatening, disseminated IFIs refractory to conventional antifungal drug therapy. The infections were all microbiologically and histologically proven. The rapid cure of these disseminated infections with exogenous IFN-gamma injections was not associated with impaired kidney allograft function despite the use of liposomal amphotericin B in all cases. No clinical toxicity from the IFN-gamma immunotherapy was seen and no IFI relapsed during long-term follow-up. Our experience is both uncontrolled and in patients with unpredictable fungal infection-related outcomes. However, compared to standard approaches, the accelerated cure of life threatening, disseminated IFIs with 6 weeks of combination antifungal drug therapy and IFN-gamma immunotherapy saved lives, retained allograft function and led to substantial cost savings in this small patient group.


Subject(s)
Interferon-gamma/therapeutic use , Kidney Transplantation/adverse effects , Mycoses/drug therapy , Adult , Aged , Amphotericin B/therapeutic use , Antifungal Agents/therapeutic use , Drug Therapy, Combination , Fatal Outcome , Female , Humans , Immunotherapy , Male , Middle Aged
10.
Histopathology ; 52(3): 277-82, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18081814

ABSTRACT

AIMS: To investigate the reactivity for oestrogen and progesterone receptors (ER and PR) in renal oncocytoma (RO) and chromophobe renal cell carcinoma (CHRCC). MATERIALS AND METHODS: Thirty-eight RO, 25 CHRCC, 20 papillary RCC with oncocytic cytoplasm and 10 clear cell RCC with dominant eosinophilic cytoplasm were submitted for immunohistochemistry for ER, PR, CD117 and RCC. RESULTS: All cases of RO and CHRCC displayed moderately positive reactivity for PR. The nuclear reactivity ranged from 60% to 90% in RO and from occasional cells to 70% in CHRCC. In CHRCC, reactivity tended to be more prevalent in areas of tumour cells with eosinophilic cytoplasm. Progesterone reactivity was focal in areas. All RO and most CHRCC were reactive for CD117 and neither RO nor CHRCC was reactive for RCC. CD117 reactivity tended to be more intense in CHRCC than in RO. Negative reactivity for CD117 and positive reactivity for RCC were observed in almost all RCC, as reported in the literature. CONCLUSIONS: PR can be used in combination with CD117 and RCC in the differential diagnosis of RO and eosinophilic variant of CHRCC with other RCC with oncocytic or eosinophilic cytoplasm.


Subject(s)
Adenoma, Oxyphilic/metabolism , Biomarkers, Tumor/metabolism , Carcinoma, Renal Cell/metabolism , Kidney Neoplasms/metabolism , Receptors, Progesterone/metabolism , Adenoma, Oxyphilic/surgery , Carcinoma, Renal Cell/surgery , Cell Nucleus/metabolism , Cell Nucleus/pathology , Diagnosis, Differential , Female , Humans , Immunoenzyme Techniques , Kidney Neoplasms/surgery , Male , Proto-Oncogene Proteins c-kit/metabolism , Receptors, Estrogen/metabolism
11.
J Immunol Methods ; 270(1): 109-18, 2002 Dec 01.
Article in English | MEDLINE | ID: mdl-12379343

ABSTRACT

Highly active anti-retroviral therapy (HAART) has reduced the plasma load of HIV-1 to undetectable levels. It has however failed to eliminate the virus from other body compartments. Current methods for monitoring persistent viral replication in HIV-1+ patients require a large amount of blood and/or repeated tissue biopsies. Furthermore, some of the viral reservoirs, such as brain and eye, are inaccessible for sampling. The detection of episomal HIV-1 DNA 2-LTR circles in CD4+ cells is indicative of recent, acute infection events. This paper describes a reliable and reproducible LightCycler-based assay for the quantitative measurement of HIV-1 DNA 2-LTR circles in human peripheral blood mononuclear (PBMN) cells. It details the modifications to the DNA extraction procedure and to the LightCycler PCR procedure that were required to achieve this. This new surrogate marker of persistent viral replication can now be reliably, reproducibly and robustly used to study the clinical progress of large numbers of patients whose plasma HIV-1 RNA has been reduced to undetectable levels by anti-retroviral drugs.


Subject(s)
DNA, Viral/analysis , HIV Infections/virology , HIV Long Terminal Repeat , HIV-1/genetics , Polymerase Chain Reaction/methods , DNA Restriction Enzymes , Gene Amplification , HIV Infections/blood , HIV-1/isolation & purification , Leukocytes, Mononuclear/virology , Plasmids/isolation & purification , Platinum , RNA, Viral/analysis , Reproducibility of Results , Taq Polymerase
12.
J Immunol Methods ; 270(1): 119-33, 2002 Dec 01.
Article in English | MEDLINE | ID: mdl-12379344

ABSTRACT

The LightCycler is a rapid air-heated thermal cycler which incorporates a fluorimeter for the detection and quantification of Polymerase Chain Reaction (PCR) amplified products. It provides real-time cycle-by-cycle analysis of product generation. Amplification occurs in glass capillary tubes. The products are detected using a fluorescent double stranded DNA binding dye or fluorescent probes. However, conditions that work well in conventional PCR reactions do not readily translate to the LightCycler. Whilst using this new technology to study an infectious pathogen in human tissue samples, several parameters were identified which can have an adverse effect on the reliable and reproducible quantification of low copy number target DNA. They included abstraction of PCR reagents on glass, primer-dimer formation, non-specific product generation, and a failure to amplify low copy number target when it is present in a high background of human chromosomal DNA. For each problem identified, several solutions are described. Novel approaches are also described to ensure that amplification of target DNA and of the quantification standards occurs with the same efficiency. With appropriate changes to the protocols currently in use, LightCycler quantitative Polymerase Chain Reaction (LC-qPCR) can be used to achieve a level of accuracy that exceeds that of an enzyme immunoassay. The LC-qPCR optimisation strategies described are of particular relevance when applying this technology to the study of pathogens in tissue samples. The technique offers the enormous potential for reliable and reproducible quantitative PCR of low copy number target DNA.


Subject(s)
DNA, Viral/analysis , HIV Infections/virology , HIV-1/genetics , Polymerase Chain Reaction/standards , DNA Primers , Eyeglasses , HIV-1/isolation & purification , Humans , Polymerase Chain Reaction/methods
13.
Chemotherapy ; 48(6): 303-8, 2002.
Article in English | MEDLINE | ID: mdl-12673105

ABSTRACT

BACKGROUND: The fruit extract of Gleditsia sinensis Lam. (GSE) is a traditional herbal medicine that is saponin-rich. However, its activity on solid tumour cell lines has never been demonstrated. METHODS: The activity of GSE was demonstrated in four cancer cell lines (breast cancer MCF-7, MDA-MB231, hepatoblastoma HepG2 and oesophageal squamous carcinoma cell line SLMT-1) using MTT assay, anchorage-independent clonogenicity assay, DNA laddering and in situ cell death detection. RESULTS: The mean MTT(50) (the mean concentration of GSE to reduce MTT activity by 50%) ranged from 16 to 20 microg/ml of GSE. An anchorage-independent clonogenicity assay showed that all of the four solid tumour cell lines gradually lost their regeneration potential after treatment with GSE, DNA fragmentation and TUNEL analysis demonstrated that the action of GSE is both dose- and time course-dependent. CONCLUSIONS: Our results suggest that GSE has a cytotoxic activity and can induce apoptosis in human solid tumour cell lines.


Subject(s)
Antineoplastic Agents, Phytogenic/pharmacology , Gleditsia/chemistry , Apoptosis , Cell Division/drug effects , Drug Screening Assays, Antitumor , Fruit , Humans , Plant Extracts/pharmacology , Tumor Cells, Cultured , Tumor Stem Cell Assay
14.
AIDS ; 15(13): 1613-26, 2001 Sep 07.
Article in English | MEDLINE | ID: mdl-11546935

ABSTRACT

BACKGROUND: HIV-1 strains R5 and X4 can infect CD4 memory T cells in vivo. Anti-CD3/28 stimulation induces beta-chemokines and CCR5 down-regulation and renders these cells resistant to R5 HIV-1 infection. Here we describe an additional cellular mechanism that blocks productive R5 HIV-1 infection of CD4 memory T cells. METHODS: Blood-derived CD4 memory T cells and CD4 T-cell clones were infected with primary R5 and X4 HIV-1 strains. Virus replication was correlated with CCR5 expression and beta-chemokine production. Virus entry and infectivity were measured by PCR for early and late products of HIV reverse transcription respectively. RESULTS: R5 strains were up to 1000-fold less infectious than X4 viruses for CD4 memory T cells. This resistance was independent of CCR5 levels and of the Delta-32 mutation and the CCR2-V64I/CCR5-59653T linked mutations. Blocking endogenous beta-chemokines relieved minimally this restriction. At the single cell level, CD4 memory cells were either permissive or non-permissive for R5 HIV-1 infection. R5 HIV titre was up to 10-fold lower than X4 virus titre even in a permissive clone. However, R5 viruses replicated as efficiently as X4 viruses in the permissive clone when neutralizing anti-beta chemokine antibodies were added. Non-permissive cells blocked a post-entry step of the virus life-cycle and expressed early but not late HIV transcripts. Neutralizing anti-beta chemokine antibodies promoted R5 virus replication marginally in the non-permissive clone. CONCLUSION: Some blood memory CD4 T cells retard R5 HIV-1 replication via endogenous beta-chemokines whereas others block productive R5 HIV-1 infection by an additional mechanism that interferes with a post-entry step of the virus life cycle. These natural barriers might contribute to lower pathogenicity of R5 HIV-1 strains for CD4 memory T cells than X4 viruses that emerge late in disease.


Subject(s)
CD4-Positive T-Lymphocytes/virology , Chemokines, CC/pharmacology , HIV-1/pathogenicity , Immunologic Memory , Virus Replication , Cell Line , Cells, Cultured , Chemokines, CC/biosynthesis , HIV Infections/prevention & control , HIV Infections/virology , HIV-1/drug effects , HIV-1/genetics , HIV-1/physiology , Humans , Polymorphism, Genetic , Receptors, CCR5/genetics , Receptors, CCR5/metabolism , Virus Replication/drug effects
15.
Nat Med ; 6(1): 76-81, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10613828

ABSTRACT

Treatment of HIV-1-infected individuals with a combination of anti-retroviral agents results in sustained suppression of HIV-1 replication, as evidenced by a reduction in plasma viral RNA to levels below the limit of detection of available assays. However, even in patients whose plasma viral RNA levels have been suppressed to below detectable levels for up to 30 months, replication-competent virus can routinely be recovered from patient peripheral blood mononuclear cells and from semen. A reservoir of latently infected cells established early in infection may be involved in the maintenance of viral persistence despite highly active anti-retroviral therapy. However, whether virus replication persists in such patients is unknown. HIV-1 cDNA episomes are labile products of virus infection and indicative of recent infection events. Using episome-specific PCR, we demonstrate here ongoing virus replication in a large percentage of infected individuals on highly active anti-retroviral therapy, despite sustained undetectable levels of plasma viral RNA. The presence of a reservoir of 'covert' virus replication in patients on highly active anti-retroviral therapy has important implications for the clinical management of HIV-1-infected individuals and for the development of virus eradication strategies.


Subject(s)
Anti-HIV Agents/therapeutic use , HIV Infections/drug therapy , HIV Infections/virology , HIV Long Terminal Repeat , HIV-1/genetics , Base Sequence , CD4 Lymphocyte Count/drug effects , DNA Primers , Drug Therapy, Combination , HIV Infections/immunology , HIV-1/physiology , Humans , Lymphocytes/immunology , RNA, Viral/blood , Reference Values , Reverse Transcriptase Inhibitors/therapeutic use , Viral Load , Virus Replication
16.
AIDS ; 12(4): 399-409, 1998 Mar 05.
Article in English | MEDLINE | ID: mdl-9520170

ABSTRACT

OBJECTIVE: To determine the safety and efficacy of the sulphated polysaccharide, dextrin 2-sulphate, when delivered to the lymphatic circulation by the peritoneal route. DESIGN: An open Phase I/II dose-escalation clinical study in which six patients with AIDS were treated with seven courses of dextrin 2-sulphate each lasting 1 month. METHODS: During each course of treatment, the drug was administered daily for 28 days using an intraperitoneal catheter. Viral load was measured at frequent intervals using a plasma tissue culture infectious dose (TCID) assay, a cellular TCID assay, p24 antigenaemia, HIV-1 RNA and HIV-1 DNA. Plasma beta-chemokine levels were also measured. RESULTS: Dose escalation was completed without toxicity. A total of 7 patient-months of treatment were completed. With increasing doses of dextrin 2-sulphate, the infectious plasma viraemia, cellular viraemia and p24 antigenaemia all fell during the period of drug administration, but with no significant change in HIV-1 RNA. This was associated with increased plasma levels of macrophage inflammatory protein (MIP)-1alpha and MIP-1beta. Dextrin 2-sulphate accumulated in peritoneal macrophages and induced the release of MIP-1alpha and MIP-1beta from these cells in vitro. These beta-chemokines could have augmented the cell surface-mediated anti-HIV-1 effect of dextrin 2-sulphate in vivo by binding to and blocking the CC-chemokine receptor-5. A second fall in infectious plasma viraemia, cellular viraemia, p24 antigenaemia and HIV-1 RNA was seen at day 100 which was then sustained for several months. A clinical improvement in Kaposi's sarcoma was also seen. CONCLUSIONS: Our results suggest that the intraperitoneal administration of dextrin 2-sulphate can reduce the replication of HIV-1 in patients with AIDS. With increasing doses of dextrin 2-sulphate, the fall in viral load was seen during the period of drug administration and again 2 months after completing treatment.


Subject(s)
Acquired Immunodeficiency Syndrome/drug therapy , Acquired Immunodeficiency Syndrome/virology , Anti-HIV Agents/administration & dosage , Dextrins/administration & dosage , HIV-1/drug effects , AIDS-Related Opportunistic Infections/drug therapy , Anti-HIV Agents/pharmacokinetics , Anti-HIV Agents/therapeutic use , Cells, Cultured , Chemokine CCL3 , Chemokine CCL4 , Dextrins/pharmacokinetics , Dextrins/therapeutic use , Dose-Response Relationship, Drug , Drug Administration Schedule , Humans , Immunohistochemistry , Infusions, Parenteral , Macrophage Inflammatory Proteins/metabolism , Macrophages, Peritoneal/immunology , Macrophages, Peritoneal/metabolism , RNA, Viral/blood , Sarcoma, Kaposi/drug therapy , Treatment Outcome , Viral Load , Viremia
17.
J Virol ; 71(4): 2928-33, 1997 Apr.
Article in English | MEDLINE | ID: mdl-9060651

ABSTRACT

Thirty-one histologically abnormal brains from patients with AIDS were studied in order to establish the relationship between multinucleated giant cells, viral protein expression, the various forms of human immunodeficiency virus type 1 (HIV-1) DNA, and clinical evidence of dementia. Unintegrated HIV-1 DNA of 2 to 8 kb was found in 22 of the 31 brains. Multinucleated giant cells without any other pathology were found in 14 cases; unintegrated 1-long terminal repeat (1-LTR) circular forms of HIV-1 DNA and strongly positive immunohistochemistry for gp41 and p24 were found in most of these brains. Most of these patients had a clinical diagnosis of HIV-1-associated dementia and cerebral atrophy. In all the other brains studied, 1-LTR circles were absent and immunohistochemistry for gp41 and p24 was usually negative. Very few of these patients had a clinical diagnosis of dementia. Sequence comparison of the LTR region from integrated HIV-1 DNA with that from unintegrated 1-LTR circular forms of HIV-1 DNA in 12 cases showed no significant differences. A further comparison of these brain-derived LTR sequences with LTR sequences derived directly from lymphoid tissue also showed strong sequence conservation. The V3 loop of the virus from the brain was sequenced in 6 cases and had a non-syncytium inducing-macrophage-tropic genotype. Our results show that (i) although unintegrated HIV-1 DNA was present in most brains from patients with AIDS, molecular evidence of high levels of viral replication was associated with the presence of multinucleated giant cells and dementia, and that (ii) the HIV-1 LTR is not a determinant of neurotropism. These observations suggest that replication of HIV-1 and not just the presence of HIV-1 DNA within giant cells makes the important contribution to central nervous system damage.


Subject(s)
AIDS Dementia Complex/virology , DNA, Circular/analysis , DNA, Viral/analysis , HIV Core Protein p24/biosynthesis , HIV Envelope Protein gp41/biosynthesis , HIV-1/genetics , Virus Integration , AIDS Dementia Complex/pathology , Brain/pathology , Brain/virology , Giant Cells/virology , HIV Long Terminal Repeat , HIV-1/metabolism , Humans , Retrospective Studies
18.
Histochem J ; 27(9): 647-59, 1995 Sep.
Article in English | MEDLINE | ID: mdl-8557528

ABSTRACT

Polymerase chain reaction (PCR) in situ is a new technique which promises to enhance considerably our ability to detect a few copies of target nucleic acid sequences in fixed tissues and cells. It has an enormous potential for application in diagnostic histopathology of viral diseases and in the study of gene expression. PCR in situ is, however, technically difficult, and amplification of the target DNA is only 30-300 fold. In this article we present an overview of PCR in situ techniques used to amplify both DNA and RNA targets (RT-PCR in situ). We also identify problems which can reduce the efficiency of the technique or which can give rise to false-positive results. They include (1) the inhibitory effects of cross-linking of histones to DNA or PCR amplification, (2) abstraction of PCR reagents by tissue-bonding agents which are used to coat glass slides, (3) poor denaturation of target DNA and subsequent DNA renaturation due to extensive cross-linking of histones to DNA, or because of incorrect temperature regulation of thermal cyclers, (4) false-positive results which arise from end-labelling of DNA strand breaks by Taq polymerase, and (5) diffusion of PCR products into and out of cells leading to false-positive results. We present some of the approaches that have been used to overcome some of these difficulties and suggest new avenues for investigation to improve this technique further.


Subject(s)
In Situ Hybridization/methods , Polymerase Chain Reaction/methods , Animals , DNA/analysis , False Positive Reactions , Gene Expression , Humans , RNA, Messenger/analysis , Tissue Fixation
19.
Histochem J ; 27(9): 660-9, 1995 Sep.
Article in English | MEDLINE | ID: mdl-8557529

ABSTRACT

PCR in situ promises the ability to amplify and detect very low levels of target nucleic acid in tissues. Despite considerable effort, the technique is still technically difficult and has not yet proved to be reliable or reproducible. We have now identified a number of factors which can contribute to the poor amplification of the target DNA and to the generation of false-positive signals. These factors include the effects of fixation, reagent abstraction, DNA degradation, DNA end-labelling and product diffusion. We present evidence to show that formaldehyde fixation cross-links histones to DNA and thus restricts the subsequent amplification of target sequences by PCR. End-labelling of DNA occurs when direct incorporation is used to detect amplified products and this gives rise to false-positive signals. Amplified products can also diffuse out of cells and into neighbouring cells which do not contain target sequences. They can undergo re-amplification within these cells giving rise to false-positive signals. We believe considerable caution should be exercised in the interpretation of results generated using PCR in situ.


Subject(s)
In Situ Hybridization/methods , Polymerase Chain Reaction/methods , Autoradiography , Base Sequence , Blotting, Southern , Cell Line , Cross-Linking Reagents , DNA Damage , DNA, Viral/analysis , Electrophoresis, Agar Gel , False Positive Reactions , Formaldehyde , Gene Amplification , HIV Infections/diagnosis , HIV Infections/virology , HIV-1/genetics , HIV-1/isolation & purification , Histones/chemistry , Humans , Molecular Sequence Data , Tissue Fixation
20.
Virology ; 197(1): 449-54, 1993 Nov.
Article in English | MEDLINE | ID: mdl-8212582

ABSTRACT

The transport/capsid assembly protein (tp/cap) gene of human herpesvirus 6 (HHV6) strain U1102 has been identified and localized on the restriction enzyme map of the viral genome, to the EcoRI-Q fragment. The complete DNA sequence of the tp/cap gene was determined. The tp/cap gene encodes a protein product of 726 amino acids and has the strongest similarity with the homologous gene (HCMV UL56) from HCMV. Upstream of the tp/cap open reading frame is the gene for the major DNA binding protein (mdbp) and downstream is the glycoprotein B (gB) gene. This gene block arrangement is common to all herpesviruses.


Subject(s)
Genes, Viral , Herpesvirus 6, Human/genetics , Viral Proteins/genetics , Amino Acid Sequence , Base Sequence , Codon/genetics , Consensus Sequence , DNA Primers , DNA-Binding Proteins/genetics , Genome, Viral , Molecular Sequence Data , Open Reading Frames , Polymerase Chain Reaction , Restriction Mapping , Sequence Homology, Amino Acid
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