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1.
J Chem Ecol ; 48(9-10): 730-745, 2022 Oct.
Article in English | MEDLINE | ID: mdl-35984547

ABSTRACT

Plants produce a diversity of secondary metabolites including volatile organic compounds. Some species show discrete variation in these volatile compounds such that individuals within a population can be grouped into distinct chemotypes. A few studies reported that volatile-mediated induced resistance is more effective between plants belonging to the same chemotype and that chemotypes are heritable. The authors concluded that the ability of plants to differentially respond to cues from related individuals that share the same chemotype is a form of kin recognition. These studies assumed plants were actively responding but did not test the mechanism of resistance. A similar result was possible through the passive adsorption and reemission of repellent or toxic VOCs by plants exposed to damage-induced plant volatiles (DIPVs). Here we conducted exposure experiments with five chemotypes of sagebrush in growth chambers; undamaged receiver plants were exposed to either filtered air or DIPVs from mechanically wounded branches. Receiver plants exposed to DIPVs experienced less herbivore damage, which was correlated with increased expression of genes involved in plant defense as well as increased emission of repellent VOCs. Plants belonging to two of the five chemotypes exhibited stronger resistance when exposed to DIPVs from plants of the same chemotypes compared to when DIPVs were from plants of a different chemotype. Moreover, some plants passively absorbed DIPVs and reemitted them, potentially conferring associational resistance. These findings support previous work demonstrating that sagebrush plants actively responded to alarm cues and that the strength of their response was dependent on the chemotypes of the plants involved. This study provides further support for kin recognition in plants but also identified volatile-mediated associational resistance as a passively acquired additional defense mechanism in sagebrush.


Subject(s)
Artemisia , Volatile Organic Compounds , Humans , Artemisia/physiology , Herbivory/physiology , Volatile Organic Compounds/pharmacology , Volatile Organic Compounds/metabolism , Plants/metabolism
2.
J Trace Elem Med Biol ; 73: 127042, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35905605

ABSTRACT

INTRODUCTION: All animals, including humans, are exposed to heavy metals which are known to accumulate in different tissues, especially in bone. During pregnancy, the maternal bone turnover is increased and the metals in the mother's body can be mobilized into the bloodstream. Heavy metals in maternal blood are known to pass through the placenta to the fetal blood and finally, deposited to bone tissue. However, there are no studies on the concentration of metals in the fetal solid tissues and until now, the rate of metal transfer from mother to fetus is not exactly known. MATERIALS AND METHODS: Samples of the blood, liver, placenta, and three different bones were collected from 17 pregnant ewes and their 27 fetuses. The animals had no known exposure to heavy metals. The concentrations of Al, As, Ba, Ca, Cd, Co, Cr, Cu, Fe, Hg, K, Mg, Mn, Mo, Na, Ni, P, Pb, Rb, Sb, Sn, Sr, Te, Ti, Tl, V, and Zn were analyzed using ICP-MS. RESULTS AND DISCUSSION: The concentration of Sb, Sn, Te, and Tl were under the detection limit in all the samples. The other metals were found in all maternal and fetal tissues, suggesting that all detectable metals cross the placenta. Blood concentrations were low compared to solid tissue concentrations. The concentrations of essential elements varied between maternal and fetal tissues, which could be explained by biological differences. The differences in concentrations of non-essential elements between the ewe and fetuses were smaller. The most significant differences were between maternal and fetal concentrations of Ba and Sr, which is at least partly explained by the mineralization degree of the bone. CONCLUSION: Heavy metals accumulate in fetal solid tissues in sheep that are not directly exposed to heavy metals. Because of the differences in anatomy between human and sheep placenta, the accumulation in the tissue of human fetuses should be extrapolated cautiously. However, there might be some clinical relevance for fertile aged women who are exposed to heavy metals, such as women who work in the metal industry or who have undergone joint replacement surgery.


Subject(s)
Mercury , Metals, Heavy , Trace Elements , Aged , Animals , Female , Fetal Blood , Humans , Placenta , Pregnancy , Sheep
3.
Gigascience ; 11(1)2022 01 12.
Article in English | MEDLINE | ID: mdl-35022701

ABSTRACT

BACKGROUND: The Glanville fritillary (Melitaea cinxia) butterfly is a model system for metapopulation dynamics research in fragmented landscapes. Here, we provide a chromosome-level assembly of the butterfly's genome produced from Pacific Biosciences sequencing of a pool of males, combined with a linkage map from population crosses. RESULTS: The final assembly size of 484 Mb is an increase of 94 Mb on the previously published genome. Estimation of the completeness of the genome with BUSCO indicates that the genome contains 92-94% of the BUSCO genes in complete and single copies. We predicted 14,810 genes using the MAKER pipeline and manually curated 1,232 of these gene models. CONCLUSIONS: The genome and its annotated gene models are a valuable resource for future comparative genomics, molecular biology, transcriptome, and genetics studies on this species.


Subject(s)
Butterflies , Fritillaria , Animals , Butterflies/genetics , Chromosome Mapping , Chromosomes/genetics , Fritillaria/genetics , Genome , Male
4.
Sci Total Environ ; 809: 152209, 2022 Feb 25.
Article in English | MEDLINE | ID: mdl-34883169

ABSTRACT

Soil and water contaminations are caused by rare earth elements (REEs) due to mining and industrial activities, that threaten the ecosystem and human health. Therefore, phytoremediation methods need to be developed to overcome this problem. To date, little research has been conducted concerning the phytoremediation potential of Salix for REEs. In this study, two Salix species (Salix myrsinifolia and Salix schwerinii) and two Salix cultivars (Klara and Karin) were hydroponically exposed to different concentrations of six-REE for 4 weeks. The treatments were: T1 (Control: tap water), T2 (La: 50 mg/L) and T3 (La 11.50 + Y 11 + Nd 10.50 + Dy 10 + Ce 12 and Tb 11.50 in mg L-1). The effects of the REE on Salix growth indicators (height, biomass, shoot diameter and root length), concentrations of REE in the produced biomass, and accumulation of REE in different parts of the Salix (stem, root, and leaf) tissues, were determined. In addition, the retention of REE in ashes following Salix combustion (800 and 1000 °C) was determined. The result indicates that with La and REE exposure, the height growth, dry biomass, shoot diameter and root length of all Salix remained equivalent to the control treatment excluding Klara, which displayed relatively higher growth in all parameters. Further, among the REE studied, the highest La concentration (8404 µg g-1 DW) and La accumulation (10,548 µg plant-1) were observed in Karin and Klara root respectively. Translocations and bioconcentration factors were discovered at <1 for all Salix, which indicates their phytostabilization potential. The total REE concentrations in bottom ashes varied between 7 and 8% with retention rates between 85 and 89%. This study demonstrates that Salix are suitable candidates for REE phytostabilization and the remediation of wastewater sites to limit metals percolating to the water layers in the ecosystem.


Subject(s)
Metals, Rare Earth , Salix , Soil Pollutants , Biodegradation, Environmental , Ecosystem , Humans , Soil Pollutants/analysis
5.
Commun Biol ; 4(1): 1170, 2021 10 07.
Article in English | MEDLINE | ID: mdl-34620965

ABSTRACT

Reindeer (Rangifer tarandus) are semi-domesticated animals adapted to the challenging conditions of northern Eurasia. Adipose tissues play a crucial role in northern animals by altering gene expression in their tissues to regulate energy homoeostasis and thermogenic activity. Here, we perform transcriptome profiling by RNA sequencing of adipose tissues from three different anatomical depots: metacarpal (bone marrow), perirenal, and prescapular fat in Finnish and Even reindeer (in Sakha) during spring and winter. A total of 16,212 genes are expressed in our data. Gene expression profiles in metacarpal tissue are distinct from perirenal and prescapular adipose tissues. Notably, metacarpal adipose tissue appears to have a significant role in the regulation of the energy metabolism of reindeer in spring when their nutritional condition is poor after winter. During spring, genes associated with the immune system are upregulated in the perirenal and prescapular adipose tissue. Blood and tissue parameters reflecting general physiological and metabolic status show less seasonal variation in Even reindeer than in Finnish reindeer. This study identifies candidate genes potentially involved in immune response, fat deposition, and energy metabolism and provides new information on the mechanisms by which reindeer adapt to harsh arctic conditions.


Subject(s)
Adaptation, Biological/genetics , Adipose Tissue/metabolism , Reindeer/genetics , Transcriptome , Animals , Arctic Regions , Finland , Reindeer/metabolism , Seasons , Siberia
6.
BMC Musculoskelet Disord ; 21(1): 610, 2020 Sep 12.
Article in English | MEDLINE | ID: mdl-32919463

ABSTRACT

BACKGROUND: Modern metal-on-metal (MOM) arthroplasties were performed for over a decade before alarming reports of adverse metal reactions dramatically reduced their use. Failures are seen more often with high-wearing implants, but also well-positioned components with more favourable wear patterns can cause problems. There are no specific clinical indicators that could help us to predict the prognosis of these implants. For this reason, we still need more information on the effect of underlying factors that contribute to this process. METHODS: In this prospective cohort study, we investigated how cup orientation and type of pseudotumour determined by the Hart classification effect the distribution of metals in blood, synovial fluid and tissues surrounding the metal-on-metal hip prosthesis in revision surgery patients. One thousand two hundred twenty-nine metal-on-metal hip patients were screened and of those, 60 patients that had a revision surgery due to adverse metal reaction were included. Whole blood, synovial fluid and synovial/pseudotumour tissue samples were analysed for metal ion concentrations (Co, Cr, Mo and Ti). RESULTS: The lowest metal concentrations were found when both cup anteversion and inclination were optimal, and the highest when both were suboptimal. Suboptimal anteversion alone raised Cr-ion concentrations more than suboptimal inclination. The concentrations of metals in blood, synovial fluid or synovial soft tissue were the same in patients with and without a pseudotumour, but the relative transfer percentage of cobalt from synovial fluid to blood was higher in patients with a pseudotumour. CONCLUSIONS: The implant orientation alone does not explain the metal concentrations found in tissues or distribution of metals between different tissues. The accumulation of metals in periprosthetic soft tissues increase the total metal load, and in the presence of a pseudotumour this is reflected in the transfer ratio of Co from synovial fluid to the blood. The total metal load of the pseudotumour tissue should be defined in future studies to determine if this will provide new insights for clinical practice.


Subject(s)
Arthroplasty, Replacement, Hip , Hip Prosthesis , Metal-on-Metal Joint Prostheses , Arthroplasty, Replacement, Hip/adverse effects , Chromium , Cobalt , Hip Prosthesis/adverse effects , Humans , Metal-on-Metal Joint Prostheses/adverse effects , Prospective Studies , Prosthesis Design , Prosthesis Failure , Synovial Fluid
7.
Indoor Air ; 30(3): 433-444, 2020 05.
Article in English | MEDLINE | ID: mdl-31883508

ABSTRACT

In vitro models mimicking the human respiratory system are essential when investigating the toxicological effects of inhaled indoor air particulate matter (PM). We present a pulmonary cell culture model for studying indoor air PM toxicity. We exposed normal human bronchial epithelial cells, grown on semi-permeable cell culture membranes, to four doses of indoor air PM in the air-liquid interface. We analyzed the chemokine interleukin-8 concentration from the cell culture medium, protein concentration from the apical wash, measured tissue electrical resistance, and imaged airway constructs using light and transmission electron microscopy. We sequenced RNA using a targeted RNA toxicology panel for 386 genes associated with toxicological responses. PM was collected from a non-complaint residential environment over 1 week. Sample collection was concomitant with monitoring size-segregated PM counts and determination of microbial levels and diversity. PM exposure was not acutely toxic for the cells, and we observed up-regulation of 34 genes and down-regulation of 17 genes when compared to blank sampler control exposure. The five most up-regulated genes were related to immunotoxicity. Despite indications of incomplete cell differentiation, this model enabled the comparison of a toxicological transcriptome associated with indoor air PM exposure.


Subject(s)
Air Pollutants/toxicity , Air Pollution, Indoor , Models, Biological , Particulate Matter/toxicity , Humans , Transcriptome
8.
Plant J ; 97(2): 306-320, 2019 01.
Article in English | MEDLINE | ID: mdl-30288820

ABSTRACT

Calamine accessions of the zinc/cadmium/nickel hyperaccumulator, Noccaea caerulescens, exhibit striking variation in foliar cadmium accumulation in nature. The Ganges accession (GA) from Southern France displays foliar cadmium hyperaccumulation (>1000 µg g-1 DW), whereas the accession La Calamine (LC) from Belgium, with similar local soil metal composition, does not (<100 µg g-1 DW). All calamine accessions are cadmium hypertolerant. To find out the differences between LC and GA in their basic adaptation mechanisms, we bypassed the cadmium excluding phenotype of LC by exposing the plants to 50 µm cadmium in hydroponics, achieving equal cadmium accumulation in the shoots. The iron content increased in the roots of both accessions. GA exhibited significant decreases in manganese and zinc contents in the roots and shoots, approaching those in LC. Altogether 702 genes responded differently to cadmium exposure between the accessions, 157 and 545 in the roots and shoots, respectively. Cadmium-exposed LC showed a stress response and had decreased levels of a wide range of photosynthesis-related transcripts. GA showed less changes, mainly exhibiting an iron deficiency-like response. This included increased expression of genes encoding five iron deficiency-regulated bHLH transcription factors, ferric reduction oxidase FRO2, iron transporters IRT1 and OPT3, and nicotianamine synthase NAS1, and decreased expression of genes encoding ferritins and NEET (a NEET family iron-sulfur protein), which is possibly involved in iron transfer, distribution and/or management. The function of the IRT1 gene in the accessions was compared. We conclude that the major difference between the two accessions is in the way they cope with iron under cadmium exposure.


Subject(s)
Brassicaceae/genetics , Cadmium/metabolism , Iron/metabolism , Transcriptome , Brassicaceae/physiology , Crops, Agricultural , Homeostasis , Hydroponics , Iron Deficiencies , Metals/metabolism , Photosynthesis/genetics , Plant Roots/genetics , Plant Roots/physiology , RNA-Seq , Thlaspi/genetics , Thlaspi/physiology , Zinc/metabolism
9.
Sci Data ; 4: 160131, 2017 01 31.
Article in English | MEDLINE | ID: mdl-28140388

ABSTRACT

Noccaea caerulescens of the Brassicaceae family has become the key model plant among the metal hyperaccumulator plants. Populations/accessions of N. caerulescens from geographic locations with different soil metal concentrations differ in their ability to hyperaccumulate and hypertolerate metals. Comparison of transcriptomes in several accessions provides candidates for detailed exploration of the mechanisms of metal accumulation and tolerance and local adaptation. This can have implications in the development of plants for phytoremediation and improved mineral nutrition. Transcriptomes from root and shoot tissues of four N. caerulescens accessions with contrasting Zn, Cd and Ni hyperaccumulation and tolerance traits were sequenced with Illumina Hiseq2000. Transcriptomes were assembled using the Trinity de novo assembler and were annotated and the protein sequences predicted. The comparison against the BUSCO plant early release dataset indicated high-quality assemblies. The predicted protein sequences have been clustered into ortholog groups with closely related species. The data serve as important reference sequences in whole transcriptome studies, in analyses of genetic differences between the accessions and other species, and for primer design.


Subject(s)
Brassicaceae/genetics , Transcriptome , Adaptation, Physiological , Brassicaceae/physiology , Metals , Soil
10.
Sci Total Environ ; 539: 252-261, 2016 Jan 01.
Article in English | MEDLINE | ID: mdl-26363398

ABSTRACT

Uranium (U), cobalt (Co), molybdenum (Mo), nickel (Ni), lead (Pb), thorium (Th) and zinc (Zn) occur naturally in soil but their radioactive isotopes can also be released into the environment during the nuclear fuel cycle. The transfer of these elements was studied in three different trophic levels in experimental mesocosms containing downy birch (Betula pubescens), narrow buckler fern (Dryopteris carthusiana) and Scandinavian small-reed (Calamagrostis purpurea ssp. Phragmitoides) as producers, snails (Arianta arbostorum) as herbivores, and earthworms (Lumbricus terrestris) as decomposers. To determine more precisely whether the element uptake of snails is mainly via their food (birch leaves) or both via soil and food, a separate microcosm experiment was also performed. The element uptake of snails did not generally depend on the presence of soil, indicating that the main uptake route was food, except for U, where soil contact was important for uptake when soil U concentration was high. Transfer of elements from soil to plants was not linear, i.e. it was not correctly described by constant concentration ratios (CR) commonly applied in radioecological modeling. Similar nonlinear transfer was found for the invertebrate animals included in this study: elements other than U were taken up more efficiently when element concentration in soil or food was low.


Subject(s)
Radiation Monitoring , Radioactive Pollutants/analysis , Animals , Ecosystem , Plants , Radioisotopes , Soil/chemistry
11.
Mycorrhiza ; 25(3): 195-204, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25179801

ABSTRACT

Tricholoma matsutake is an ectomycorrhizal fungus that forms commercially important mushrooms in coniferous forests. In this study, we explored the ability of T. matsutake to form mycorrhizae with Pinus sylvestris by inoculating emblings produced through somatic embryogenesis (SE) in an aseptic culture system. Two months after inoculation, clones with less phenolic compounds in the tissue culture phase formed mycorrhizae with T. matsutake, while clones containing more phenols did not. Effects of inoculation on embling growth varied among clones; two of the four tested showed a significant increase in biomass and two had a significant increase in root density. In addition, results suggest that clones forming well-developed mycorrhizae absorbed more Al, Fe, Na, P, and Zn after 8 weeks of inoculation. This study illustrates the value of SE materials in experimental work concerning T. matsutake as well as the role played by phenolic compounds in host plant response to infection by mycorrhizal fungi.


Subject(s)
Mycorrhizae/physiology , Pinus sylvestris/microbiology , Tricholoma/physiology , Cell Culture Techniques , Phenol/analysis , Phenol/metabolism , Pinus sylvestris/chemistry , Pinus sylvestris/embryology , Pinus sylvestris/metabolism
12.
Front Plant Sci ; 5: 213, 2014.
Article in English | MEDLINE | ID: mdl-24904610

ABSTRACT

The metal hyperaccumulator Noccaea caerulescens is an established model to study the adaptation of plants to metalliferous soils. Various comparators have been used in these studies. The choice of suitable comparators is important and depends on the hypothesis to be tested and methods to be used. In high-throughput analyses such as microarray, N. caerulescens has been compared to non-tolerant, non-accumulator plants like Arabidopsis thaliana or Thlaspi arvense rather than to the related hypertolerant or hyperaccumulator plants. An underutilized source is N. caerulescens populations with considerable variation in their capacity to accumulate and tolerate metals. Whole transcriptome sequencing (RNA-Seq) is revealing interesting variation in their gene expression profiles. Combining physiological characteristics of N. caerulescens accessions with their RNA-Seq has a great potential to provide detailed insight into the underlying molecular mechanisms, including entirely new gene products. In this review we will critically consider comparative transcriptome analyses carried out to explore metal hyperaccumulation and hypertolerance of N. caerulescens, and demonstrate the potential of RNA-Seq analysis as a tool in evolutionary genomics.

13.
Environ Sci Technol ; 48(6): 3344-53, 2014 Mar 18.
Article in English | MEDLINE | ID: mdl-24559272

ABSTRACT

Populations of Noccaea caerulescens show tremendous differences in their capacity to hyperaccumulate and hypertolerate metals. To explore the differences that could contribute to these traits, we undertook SOLiD high-throughput sequencing of the root transcriptomes of three phenotypically well-characterized N. caerulescens accessions, i.e., Ganges, La Calamine, and Monte Prinzera. Genes with possible contribution to zinc, cadmium, and nickel hyperaccumulation and hypertolerance were predicted. The most significant differences between the accessions were related to metal ion (di-, trivalent inorganic cation) transmembrane transporter activity, iron and calcium ion binding, (inorganic) anion transmembrane transporter activity, and antioxidant activity. Analysis of correlation between the expression profile of each gene and the metal-related characteristics of the accessions disclosed both previously characterized (HMA4, HMA3) and new candidate genes (e.g., for nickel IRT1, ZIP10, and PDF2.3) as possible contributors to the hyperaccumulation/tolerance phenotype. A number of unknown Noccaea-specific transcripts also showed correlation with Zn(2+), Cd(2+), or Ni(2+) hyperaccumulation/tolerance. This study shows that N. caerulescens populations have evolved great diversity in the expression of metal-related genes, facilitating adaptation to various metalliferous soils. The information will be helpful in the development of improved plants for metal phytoremediation.


Subject(s)
Brassicaceae/genetics , Brassicaceae/metabolism , Metals, Heavy/metabolism , Transcriptome/genetics , Biodegradation, Environmental , Ecotype , Gene Expression Profiling , Plant Proteins/analysis , Plant Proteins/genetics , Plant Proteins/metabolism , Soil Pollutants/metabolism
14.
Chemosphere ; 95: 566-71, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24182405

ABSTRACT

The feasibility of using the hyperaccumulator plant, Noccaea caerulescens, to remove trace elements from contaminated soils has been studied extensively. However, this plant creates too low biomass and an inappropriately slow growth rate for actual use in the field. Soluble bisphosphonates (BPs) are well-known pharmaceutical compounds e.g. affecting the osteoclast function in body through metabolic pathways. We devised an insoluble aminoBP, hydroxyundecylidene-1,1,-bisphosphonic acid with a long alkyl chain to be extremely effective metal chelator, and its possible use in phytoremediation deserves more attention. This article examines the effects of seven BPs on the shoot biomass, shoot metal concentrations and removal (Cd, Ni, Zn and Pb) by N. caerulescens in a pot experiment. The soluble BPs were incorporated into the soil in the irrigation water and the insoluble BP as solid after which the soil was spiked with metals. The insoluble aminoBP was found to considerably increase the shoot yield of N. caerulescens, especially in Ni-spiked soil, thus showing enhanced shoot Ni removal.


Subject(s)
Brassicaceae/physiology , Diphosphonates/metabolism , Metals/metabolism , Soil Pollutants/metabolism , Biodegradation, Environmental , Biomass , Brassicaceae/metabolism , Chelating Agents , Diphosphonates/chemistry , Metals/chemistry , Soil/chemistry , Soil Pollutants/analysis , Soil Pollutants/chemistry
15.
Tree Physiol ; 33(3): 311-9, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23425688

ABSTRACT

The effects of slightly elevated temperature (+0.8 °C), ozone (O3) concentration (1.3 × ambient O3 concentration) and their combination on over-wintering buds of Betula pendula Roth were studied after two growing seasons of exposure in the field. Carbohydrate concentrations, freezing stress resistance (FSR), bud dry weight to fresh weight ratio, and transcript levels of cytochrome oxidase (COX), alternative oxidase (AOX) and dehydrin (LTI36) genes were studied in two clones (clones 12 and 25) in December. Elevated temperature increased the bud dry weight to fresh weight ratio and the ratio of raffinose family oligosaccharides to sucrose and the transcript levels of the dehydrin (LTI36) gene (in clone 12 only), but did not alter the FSR of the buds. Genotype-specific alterations in carbohydrate metabolism were found in the buds grown under elevated O3. The treatments did not significantly affect the transcript level of the COX or AOX genes. No clear pattern of an interactive effect between elevated temperature and O3 concentration was found. According to these data, the increase in autumnal temperatures and slightly increasing O3 concentrations do not increase the risk for freeze-induced damage in winter in silver birch buds, although some alterations in bud physiology occur.


Subject(s)
Acclimatization , Betula/physiology , Carbohydrate Metabolism , Gene Expression Regulation, Plant , Plant Proteins/genetics , Betula/enzymology , Betula/genetics , Betula/growth & development , Biomass , Carbohydrates/analysis , Electron Transport Complex IV/genetics , Freezing , Genotype , Mitochondrial Proteins/genetics , Oxidoreductases/genetics , Ozone , Photosynthesis , Plant Leaves , RNA, Messenger/genetics , RNA, Plant/genetics , Seasons , Temperature , Time Factors , Trees
16.
Tree Physiol ; 32(9): 1102-12, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22935538

ABSTRACT

Northern forests are currently experiencing increasing mean temperatures, especially during autumn and spring. Consequently, alterations in carbon sequestration, leaf biochemical quality and freezing tolerance (FT) are likely to occur. The interactive effects of elevated temperature and ozone (O(3)), the most harmful phytotoxic air pollutant, on Norway spruce (Picea abies (L.) Karst.) seedlings were studied by analysing phenology, metabolite concentrations in the needles, FT and gas exchange. Sampling was performed in September and May. The seedlings were exposed to a year-round elevated temperature (+1.3 °C), and to 1.4× ambient O(3) concentration during the growing season in the field. Elevated temperature increased the concentrations of amino acids, organic acids of the citric acid cycle and some carbohydrates, and reduced the concentrations of phenolic compounds, some organic acids of the shikimic acid pathway, sucrose, cyclitols and steroids, depending on the timing of the sampling. Although growth onset occurred earlier at elevated temperature, the temperature of 50% lethality (LT(50)) was similar in the treatments. Photosynthesis and the ratio of photosynthesis to dark respiration were reduced by elevated temperature. Elevated concentrations of O(3) reduced the total concentration of soluble sugars, and tended to reduce LT(50) of the needles in September. These results show that alterations in needle chemical quality can be expected at elevated temperatures, but the seedlings' sensitivity to autumn and spring frosts is not altered. Elevated O(3) has the potential to disturb cold hardening of Norway spruce seedlings in autumn, and to alter the water balance of the seedling through changes in stomatal conductance (g(s)), while elevated temperature is likely to reduce g(s) and consequently reduce the O(3)-flux inside the leaves.


Subject(s)
Metabolome , Ozone/pharmacology , Picea/metabolism , Plant Transpiration/physiology , Temperature , Carbon Dioxide/metabolism , Cell Respiration , Finland , Flowers , Freezing , Nitrogen/metabolism , Oxidative Stress , Ozone/metabolism , Phenotype , Photosynthesis , Picea/growth & development , Picea/physiology , Seedlings , Time Factors , Trees , Water/metabolism
17.
Appl Environ Microbiol ; 78(17): 6386-9, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22752167

ABSTRACT

We addressed how restoration of forestry-drained peatlands affects CH(4)-cycling microbes. Despite similar community compositions, the abundance of methanogens and methanotrophs was lower in restored than in natural sites and correlated with CH(4) emission. Poor establishment of methanogens may thus explain low CH(4) emissions on restored peatlands even 10 to 12 years after restoration.


Subject(s)
Biota , Methane/metabolism , Soil Microbiology , Metagenome , Molecular Sequence Data , Sequence Analysis, DNA , Time Factors
18.
Mycorrhiza ; 22(6): 409-18, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22005782

ABSTRACT

Tricholoma matsutake is an economically important ectomycorrhizal fungus of coniferous woodlands. Mycologists suspect that this fungus is also capable of saprotrophic feeding. In order to evaluate this hypothesis, enzyme and chemical assays were performed in the field and laboratory. From a natural population of T. matsutake in southern Finland, samples of soil-mycelium aggregate (shiro) were taken from sites of sporocarp formation and nearby control (PCR-negative) spots. Soil organic carbon and activity rates of hemicellulolytic enzymes were measured. The productivity of T. matsutake was related to the amount of utilizable organic carbon in the shiro, where the activity of xylosidase was significantly higher than in the control sample. In the laboratory, sterile pieces of bark from the roots of Scots pine were inoculated with T. matsutake and the activity rates of two hemicellulolytic enzymes (xylosidase and glucuronidase) were assayed. Furthermore, a liquid culture system showed how T. matsutake can utilize hemicellulose as its sole carbon source. Results linked and quantified the general relationship between enzymes secreted by T. matsutake and the degradation of hemicellulose. Our findings suggest that T. matsutake lives mainly as an ectomycorrhizal symbiont but can also feed as a saprotroph. A flexible trophic ecology confers T. matsutake with a clear advantage in a heterogeneous environment and during sporocarp formation.


Subject(s)
Mycorrhizae/physiology , Pinus sylvestris/microbiology , Tricholoma/physiology , Carbon/analysis , Finland , Fruiting Bodies, Fungal/enzymology , Fruiting Bodies, Fungal/growth & development , Fruiting Bodies, Fungal/isolation & purification , Fruiting Bodies, Fungal/physiology , Glucuronidase/metabolism , Mycorrhizae/enzymology , Mycorrhizae/growth & development , Mycorrhizae/isolation & purification , Nitrogen/analysis , Plant Roots/microbiology , Polysaccharides/metabolism , Soil/chemistry , Symbiosis , Tricholoma/enzymology , Tricholoma/growth & development , Tricholoma/isolation & purification , Xylosidases/metabolism
19.
Planta ; 233(6): 1173-84, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21327818

ABSTRACT

Stress tolerance is currently one of the major research topics in plant biology because of the challenges posed by changing climate and increasing demand to grow crop plants in marginal soils. Increased Zn tolerance and accumulation has been reported in tobacco expressing the glyoxalase 1-encoding gene from Brassica juncea. Previous studies in our laboratory showed some Zn tolerance-correlated differences in the levels of glyoxalase 1-like protein among accessions of Zn hyperaccumulator Thlaspi caerulescens. We have now isolated the corresponding gene (named here TcGLX1), including ca. 570 bp of core and proximal promoter region. The predicted protein contains three glyoxalase 1 motifs and several putative sites for post-translational modification. In silico analysis predicted a number of cis-acting elements related to stress. The expression of TcGLX1 was not responsive to Zn. There was no correlation between the levels of TcGLX1 expression and the degrees of Zn tolerance or accumulation among T. caerulescens accessions nor was there co-segregation of TcGLX1 expression with Zn tolerance or Zn accumulation among F3 lines derived from crosses between plants from accessions with contrasting phenotypes for these properties. No phenotype was observed in an A. thaliana T-DNA insertion line for the closest A. thaliana homolog of TcGLX1, ATGLX1. These results suggest that glyoxalase 1 or at least the particular isoform studied here is not a major determinant of Zn tolerance in the Zn hyperaccumulator plant T. caerulescens. In addition, ATGLX1 is not essential for normal Zn tolerance in the non-tolerant, non-accumulator plant A. thaliana. Possible explanations for the apparent discrepancy between this and previous studies are discussed.


Subject(s)
Lactoylglutathione Lyase/genetics , Metals, Heavy/metabolism , Plant Proteins/genetics , Thlaspi/enzymology , Thlaspi/genetics , Adaptation, Physiological/genetics , Base Sequence , Cloning, Molecular , Gene Expression Regulation, Plant , Genes, Plant , Lactoylglutathione Lyase/metabolism , Molecular Sequence Data , Plant Proteins/biosynthesis , Plant Proteins/metabolism , Promoter Regions, Genetic , Sequence Analysis, Protein , Stress, Physiological/genetics , Thlaspi/metabolism , Zinc/metabolism
20.
J Exp Bot ; 61(6): 1583-95, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20181662

ABSTRACT

Volatile organic compounds (VOCs) are expected to have an important role in plant adaptation to high temperatures. The impacts of increasing night-time temperature on daytime terpenoid emissions and related gene expression in silver birch (Betula pendula) and European aspen (Populus tremula) clones were studied. The plants were grown under five different night-time temperatures (6, 10, 14, 18, and 22 degrees C) while daytime temperature was kept at a constant 22 degrees C. VOC emissions were collected during the daytime and analysed by gas chromatography-mass spectrometry (GC-MS). In birch, emissions per leaf area of the C11 homoterpene 4,8-dimethy1-nona-1,3,7-triene (DMNT) and several sesquiterpenes were consistently increased with increasing night-time temperature. Total sesquiterpene (SQT) emissions showed an increase at higher temperatures. In aspen, emissions of DMNT and beta-ocimene increased from 6 degrees C to 14 degrees C, while several other monoterpenes and the SQTs (Z,E)-alpha-farnesene and (E,E)-alpha-farnesene increased up to 18 degrees C. Total monoterpene and sesquiterpene emission peaked at 18 degrees C, whereas isoprene emissions decreased at 22 degrees C. Leaf area increased across the temperature range of 6-22 degrees C by 32% in birch and by 59% in aspen. Specific leaf area (SLA) was also increased in both species. The genetic regulation of VOC emissions seems to be very complex, as indicated by several inverse relationships between emission profiles and expression of several regulatory genes (DXR, DXS, and IPP). The study indicates that increasing night temperature may strongly affect the quantity and quality of daytime VOC emissions of northern deciduous trees.


Subject(s)
Betula/metabolism , Populus/metabolism , Temperature , Terpenes/metabolism , Alkenes/metabolism , Betula/genetics , Butadienes/metabolism , Gas Chromatography-Mass Spectrometry , Hemiterpenes/metabolism , Monoterpenes/metabolism , Pentanes/metabolism , Polymerase Chain Reaction , Populus/genetics , Sesquiterpenes/metabolism , Volatile Organic Compounds/metabolism , Volatilization
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