Seasonal variation in photosynthetic rates and satellite-based GPP estimation over mangrove forest.

In view of increasing anthropogenic influences and global changes, quantification of carbon assimilation through photosynthesis has gained tremendous significance. Precise estimation of Gross Primary Productivity (GPP) is essential for several ecosystem models and is typically done using coarser scale satellite data. The mangrove ecosystem, which offers significant protection to the coastal environment, is one of the critical habitats from a global change point of view. Light use efficiency (LUE) was measured using diurnal in situ photosynthetic rate observations for 13 dominant mangrove species for 3 seasons at each of the three mangrove dominant test-sites situated along the east and west coast of India. Variations in photosynthetic rates among these species were studied for 3 seasons that indicated varying responses of mangrove ecosystem at each site. Among all species, Rhizophora mucronata and Sonneratia apetala indicated higher values at two of the test-sites. IRS Resourcesat-2 LISS-IV datasets were used for the estimation of GPP. Mean GPP for all the sites varied from 1.2 to 7.7 g C m-2 day-1 with maximum value of 14.4 g C m-2 day-1. Mean values of GPP varied across the sites, based on its maximum LUE values and available photosynthetically active radiation (PAR). The results provide GPP values at much better spatial resolution for a threatened habitat like mangroves that typically survive in a narrow habitat along the coasts.

Actinobacterial community structure in the Polar Frontal waters of the Southern Ocean of the Antarctica using Geographic Information System (GIS): A novel approach to study Ocean Microbiome.

Integration of microbiological data and geographical locations is necessary to understand the spatiotemporalpatterns of themicrobial diversity of an ecosystem. The Geographic Information System (GIS) to map and cataloguethe data ontheactinobacterial diversity of the Southern Ocean waterswas completed through sampling and analysis. Water samples collectedat two sampling stations viz.Polar Front 1(Station 1) andPolar Front 2(Station2)during7thIndian Scientific Expedition to the Indian Ocean Sector of the Southern Ocean (SOE-2012-13)were used for analysis. At the outset, two different genera of Actinobacteria were recorded at both sampling stations.Streptomyces was the dominantedwiththehigh score (> 60%), followed by Nocardiopsis (< 30%)at both the sampling stations-Polar Front 1 and Polar Front 2-along withother invasive genera such as Agrococcus, Arthrobacter, Cryobacterium, Curtobacterium,Microbacterium, Marisediminicola, Rhodococcus and Kocuria. This data will help to discriminate the diversity and distribution pattern of the Actinobacteria in the Polar Frontal Region of the Southern Ocean waters.Itis a novel approachusefulfor geospatial cataloguing of microbial diversityfromextreme nichesand in various environmental gradations.Furthermore,this research work will act as the milestone for bioprospecting of microbial communities and their products having potential applications in healthcare, agriculture and beneficial to mankind. Hence, this research work would have significance in creating a database on microbial communities of the Antarctic ecosystem.

A regional algorithm to model mesozooplankton biomass along the southwestern Bay of Bengal.

A three-dimensional regression analysis attempted to model mesozooplankton (MSP) biomass using sea surface temperature (SST) and chlorophyll-a (Chl-a). The study was carried out from January 2014 to July 2015 in the southwestern Bay of Bengal (BoB) and sampling was carried out on board Sagar Manjusha and Sagar Purvi. SST ranged from 26.2 to 33.1 °C while Chl-a varied from 0.04 to 6.09 µg L-1. During the course of the study period, there was a weak correlation (r = 0.32) between SST and Chl-a statistically. MSP biomass varied from 0.42 to 9.63 mg C m-3 and inversely related with SST. Two kinds of approaches were adopted to develop the model by grouping seasonal datasets (four seasonal algorithms) and comprising all datasets (one annual algorithm). Among the four functions used (linear, paraboloid, the Lorentzian and the Gaussian functions), paraboloid model was best suited. The best seasonal and annual algorithms were applied in the synchronous MODIS-derived SST and Chl-a data to estimate the MSP biomass in the southwestern BoB. The modelled MSP biomass was validated with field MSP biomass and the result was statistically significant, showing maximum regression coefficient for the seasonal algorithms (R2 = 0.60; p = 0.627; α = 0.05), than the annual algorithm (R2 = 0.52; p = 0.015, α = 0.05).

Differential methods of localisation of fungal endophytes in the seagrasses.

Sections of three seagrass species (Halophila ovalis, Cymodocea serrulata and Halodule pinifolia) were assessed for endophytes based on differential staining using light and fluorescence microscopy method. Acridine orange and aniline blue detected endophytic fungi in 20% and 10% of the segments, respectively, whereas lactophenol cotton blue was more sensitive to detect the fungal hyphae in 70% of the segments. Hyphae were the principal fungal structures generally observed under the cuticle, within the epidermal cells, mesophyll (Parenchyma) cells and occasionally within the vascular tissue that varied in type, size and location within the leaf tissue. Present study also recorded the sporulation for the first time from the seagrass endophytes. Successfully amplified products of the ITS region of endophytic fungal DNA, directly from seagrass tissue and also from culture-dependent fungal DNA clearly depicted the presence of endophytic fungi in H. ovalis with two banding patterns (903 and 1381 bp) confirming the presence of two dominant fungal genera. The fingerprinting of endophytic fungal community within the seagrass tissue was assessed using denaturing gradient gel electrophoresis (DGGE) that derived with multiple bands that clarified the presence of more than one taxon within the seagrass tissue.

Changes in nutrients ratio along the central Bay of Bengal coast and its influence on chlorophyll distribution.

Elemental ratio of nutrients and its influence on chlorophyll a distribution was studied along the central coast of Bay of Bengal using multivariate statistical methods. High chlorophyll concentration was observed during summer (1.81 µg l⁻¹) and premonsoon (1.95 µgl⁻¹), however, it was high in top 20 m during premonsoon season in tandem with high nitrate (N) and silicate (Si) concentration. N:P (phosphate) ratio was less than Redfield ratio (16:1) during all seasons, indicating the Bay of Bengal as nitrate limited and confirmed the results of Principal ComponentAnalysis (PCA) with positive loading and multiple regression analysis showing negative correlation between this ratio and chlorophyll concentration during all seasons. Whereas, N:Si ratio was < 1 and Si:P ratio > 7 in top 20 m during all seasons explained the deficiency of phosphorus and enrichment of silicate in the central Bay of Bengal. Regression analysis between Si:P and N:Si ratios with chlorophyll showed negative correlation during premonsoon and summer respectively. Thus, the present results confirmed that nutrient molar ratios such as N:P<16; Si:P>7 and N:Si<1 was indicative of a potential N and Si limitation and are the primary limiting nutrients in the central Bay of Bengal in determining chlorophyll concentration.

Heavy metal enrichment in the seagrasses of Lakshadweep group of islands--a multivariate statistical analysis.

An assessment on heavy metal (Al, Cd, Co, Cr, Cu, Fe, Mg, Mn, Ni, Pb and Zn) accumulation by seven seagrass species of Lakshadweep group of islands was carried out using multivariate statistical tools like principal component analysis (PCA) and cluster analysis (CA). Among all the metals, Mg and Al were determined in higher concentration in all the seagrasses, and their values varied with respect to different seagrass species. The concentration of the four toxic heavy metals (Cd, Pb, Zn and Cu) was found higher in all the seagrasses when compared with the background values of seagrasses from Flores Sea, Indonesia. The contamination factor of these four heavy metals ranged as Cd (1.97-12.5), Cu (0.73-4.40), Pb (2.3-8.89) and Zn (1.27-2.787). In general, the Pollution Load Index (PLI) calculated was found to be maximum for Halophila decipiens (58.2). Results revealed that Halophila decipiens is a strong accumulator of heavy metals, followed by Halodule uninervis and Halodule pinifolia, among all the tested seagrasses. Interestingly, the small-leaved seagrasses were found to be efficient in heavy metal accumulation than the large-leaved seagrass species. Thus, seagrasses can better be used for biomonitoring, and seagrasses can be used as the heavy metal sink as the biomass take usually long term to get remineralize in nature.

Rhizobacterial population density and nitrogen fixation in seagrass community of Gulf of Mannar, India.

Seagrass rhizosphere generally supports high bacterial population density which plays a major role in determining the nutrient cycles of the sea. Higher densities of total heterotrphic bacteria (26.3 x 10(6) CFU g(-1)), nitrogen fixing (27.3 x 10(3) CFUg(-1), ammonifying (44.66 x 10(6) MPN g(-1)) and nitrifying bacteria (42.33 X 10(6) MPN g(-1)) have been registered in the seagrass areas than the non seagrass area. In particular, all these rhizosphere microbial population was higher in Thalassia hemprichii. The rates of nitrogen fixation was recorded in the different species of seagrasses such as Enhalus acoroides (1.166 n mol g(-1) d(-1)), Halophila ovalis (0.166 n mol g(-1) d(-1)), Thalassia hemprichii(18.5 n mol g(-1) d(-1)), Cymodocea serrulata (10.5 n mol g(-1) d(-1)), Halodule uninervis (5.375 n mol g(-1) d(-1)) and Syringodium isoetifolium (0.666 n mol g(-1) d(-1)) using gas chromatography. The average nitrogen fixation by the seagrasses of Gulf of Mannar alone was estimated to be 7640.58 n mol m(-2) d(-1) and the contributions from the rhizosphere microbes will increase the quantity to many fold.

Screening of marine actinobacteria for amylase enzymes inhibitors.

Amylase inhibitor producing actinobacteria were isolated and characterized from terrestrial environment and there is no much report found from marine environment, hence in the present study, 17 strains isolated from the rhizosphere sediments of mangroves were tested for their amylase inhibition ability. Seawater requirement test for the growth of actinobacteria found that the strains SSR-3, SSR-12 and SSR-16 requires at least 50% and SSR-6 requires at least 25% seawater for their growth. The inhibition activity of both prokaryotic and eukaryotic amylase was tested by using Bacillus subtilis and Aspergillus niger. The maximum amylase activity (40mm) produced by the A. niger was taken as positive control, when the test actinobacteria strains grown in the medium they inhibited amylase activity and was evidenced by the reduction in inhibition zone (14-37 mm) similarly the amylase produced by the Bacillus subtilis was also recorded maximum (35 mm) amylase activity and was taken as positive control, and the test atinobacterial strains reduced enzyme action(12-33 mm) it varied levals. This indicates that the actinobacteria strains were controlled amylase enzyme activity in both the cases. The strain SSR-10 was highly effective and SSR-8 was less effective in inhibiting eukaryotic amylase produced by A. niger. The strain SSR-2 was effective and SSR-6 showed very less effect in inhibiting the prokaryotic amylase produced by the B subtilis.

Spectral reflectance properties of mangrove species of the Muthupettai mangrove environment, Tamil Nadu.

In the Muthupettai mangrove environment, spectral properties of six mangrove species viz. Avicennia marina, Aegiceras corniculatum, Excoecaria agallocha, Acanthus ilicifolius, Suaeda monoica and S. maritima was studied using Multi band Ground Truth Radiometer (Model-041). The study found that the chlorophyll concentration of different mangrove leaves varies between 0.05 and 0.36 mg g(-1), registering the minimum in S. maritima and maximum in E. agallocha. Interestingly species with higher chlorophyll concentration showed lower reflectance values alteast in the spectral bands 1 and 2. E. agallocha registered 0.36 mg g(-1) of chlorophyll while it recorded only 2.18 and 2.43% reflectance where as S. maritima recorded 3.16 and 3.27% of reflectance in bands 1 and 2. This indicates chlorophyll concentration is one of major factors responsible in determining the reflectance pattern of the pant communities. The spectral properties of mangroves were largely differed with that of the water and soil samples collected from the same locations, these results favourd the utilization of remotely sensed data for depicting various water and soil quality parameters from that of mangrove species in the mangrove environment. This study also found that the difference in reflectance of mangroves at canopy level is not only influenced by the chlorophyll content of species but also by the prevailing environmental condition and background reflectance of soil and water as well.

Probiotics in aquaculture: importance and future perspectives.

Aquaculture is one of the fastest developing growth sectors in the world and Asia presently contributes about 90% to the global production. However, disease outbreaks are constraint to aquaculture production thereby affects both economic development of the country and socio-economic status of the local people in many countries of Asia-Pacifi c region. Disease control in aquaculture industry has been achieved by following different methods using traditional ways, synthetic chemicals and antibiotics. However, the use of such expensive chemotherapeutants for controlling diseases has been widely criticized for their negative impacts like accumulation of residues, development of drug resistance, immunosuppressants and reduced consumer preference for aqua products treated with antibiotics and traditional methods are ineffective against controlling new diseases in large aquaculture systems. Therefore, alternative methods need to be developed to maintain a healthy microbial environment in the aquaculture systems there by to maintain the health of the cultured organisms. Use of probiotics is one of such method that is gaining importance in controlling potential pathogens. This review provides a summary of the criteria for the selection of the potential probiotics, their importance and future perspectives in aquaculture industry.

Studies on L-asparaginase enzyme of actinomycetes isolated from estuarine fishes.

Actinomycetes were isolated from different organs viz. skin, gills and gut contents of three species of fishes viz. Mugil cephalus (Linnaeus, 1758), Chanos chanos (Forskal, 1775) and Etroplus suratensis (Bloch, 1780) using three different media from the Vellar estuary, situated along the southeast coast of India. Among the three fishes, M. cephalus harboured highest number of actinomycetes population in all the three body parts examined followed by C. chanos and E. suratensis. Out of the three body parts of all fishes, gut contents had highest actinomycetes population followed by gills and skin. Among the three media used for isolation of actinomycetes, Kuster's agar medium was found to be suitable than the starch casein agar and glucose asparagine agar media. Out of the 40 strains isolated, only six strains (LA-2, LA-8, LA-15, LA-20, LA-29 and LA-35) showed significant L-asparagianse activity and were taken up for further studies. Impact of various physical and chemical factors such as pH, temperature, sodium chloride concentration, carbon sources and amino acids on the growth of actinomycetes and L-asparaginase activity was also studied. Optimum growth and enzyme activity was noticed under pH 7 to 8, temperature 37 degrees C, 1-2% sodium chloride concentration, sucrose as carbon source and without any amino acids. Analysis of the cell components of the isolated strains has revealed the wall type-I (the wall type-I is typical for the genus Streptomyces) and the strains were micromorphologically similar to the genus Streptomyces. Hence, the morphological, physiological and biochemical along with the micromorphological results obtained for the L-asparaginase producing strains were compared and the strains were tentatively identified as Streptomyces aureofasciculus (LA-2), S. chattanoogenesis (LA-8), S. hawaiiensis (LA-15), S. orientalis (LA-20), S. canus (LA-29) and S. olivoviridis (LA-35).

Effect of natural preservatives on the growth of histamine producing bacteria.

Present study deals with the hampering of the growth of histamine producing bacteria (HPB), by using NaCl and spices which are easily available and cheaper cost wise. For this experiment, four strains of HPB viz. Vibrio parahaemolyticus, Bacillus cereus, Pseudomonas aeruginosa and Proteus mirabilis were tested against 1 to 10% concentrations of NaCl and 1 to 5% concentrations of natural preservatives (turmeric, ginger and garlic) in a basal medium. HPB showed different growth rates at different concentrations of NaCl and natural preservatives. V. parahaemolyticus, B. cereus and Ps. aeruginosa showed no growth at 10% concentration. When the HPB growth was tested with garlic, turmeric and ginger extracts, growth of all the bacteria was inhibited by garlic and turmeric extracts at 5% concentration. In ginger, V. parahaemolyticus, B. cereus and P. mirabilis were totally inhibited at 5% concentration. But Ps. aeruginosa showed very less growth at this concentration.

Nutrient characteristics and sediment texture of the seagrass beds of the Gulf of Mannar.

Changes in nutrient concentrations and sediment texture of the seagrass beds were recorded for two years from July 1996 to June 1998 at monthly intervals at two stations (Station 1--Manoli island; Station 2--Chinnapalam) of the Gulf of Mannar Marine Biosphere Reserve. Different nutrients in water showed varied concentrations in different seasons. Phosphate concentration varied between 2.32 and 7.32 microM, nitrate concentration ranged from 5.2 to 18.78 microM and nitrite concentration from 1.92 to 732 microM. Sand was a major component of the sediments, followed by silt and clay at both the stations. At station 1, sand composition varied between 85.9 and 95.3% while at station 2, it varied between 81.9 and 93.6%. Silt composition varied between 3.1 and 9.4% at station land at station 2, it varied between 4.0 and 12.4%. At station 1, clay composition varied from 1.6 to 4.6% and at station 2, it varied between 2.1 and 5.6%. The present study revealed that the nutrients and sediment characteristics of the seagrass beds of the Gulf of Mannar has clear spatial and temporal variations. They are largely interlinked and influenced by the human activities and climatic changes and are individually or jointly governing the distribution, diversity, biomass and productivity of the seagrasses of the Gulf of Mannar.

Phosphate solubilizing actinomycetes in the estuarine environment: an inventory.

Sediment samples were collected from different stations of the Vellar estuary for isolation of total actinomycetes and phosphate solubilizing actinomycetes. Phosphatase activity in the sediments was also investigated Consistently a higher number of actinomycetes, phosphate solubilizing actinomycetes and phosphatase activity were recorded from the clay sediments than the sandy sediments at all the stations. In all, 7 strains showed positive phosphatase activity. Among them, one strain PS-3 exhibited good activity and was further investigated for optimum phosphorus solubilization at different pH (6, 6.5, 7, 7.5 and 8) and incubation (1st day to 20th day) periods. The solubilizing activity was maximum at the pH 7 and an incubation period of 13 days was required for an appreciable quantity of phosphorus to be leached into the medium. Based on the chemotaxonomical and conventional methods of identification, the strain PS-3 has been tentatively identified as Streptomyces galbus. The present study indicates that phosphatase enzyme and S. galbus along with other actinomycetes species would play a major role in solubilizing the phosphate in the estuarine ecosystem and increasing the soluble phosphate concentration thereby enhancing the productivity

Partial purification and anti-leukemic activity of L-asparaginase enzyme of the actinomycete strain LA-29 isolated from the estuarine fish, Mugil cephalus (Linn.).

The actinomycete strain LA-29 isolated from the gut contents of the fish, Mugil cephalus of the Vellar estuary showed excellent L-asparaginase activity The enzyme was purified 18-fold and the final recovery of protein was 1.9%, which exhibited an activity of 13.57 IU/mg protein. The partially purified L-asparaginase inhibited the growth of leukemia cells in male wistar rats. Average survival period of the rats was more in an optimum enzyme dose of 100 units and the survival period was less when the dosages were increased and at the same time the enzyme became less effective when the dosages were decreased. Higher survival of 17.2 days was recorded when 100 units of the enzyme was given in three intermittent doses (50/25/25 units) at the interval of 24 hr. Analysis of cell components of the strain LA-29 has revealed the wall type-I which is the characteristic of the genus Streptomyces. Further the morphological, physiological and biochemical features along with the micromorphological results obtained for the strain LA-29 were compared with that of the Streptomyces species found in Bergey's Manual of Determinative Bacteriology and the strain LA-29 has been tentatively identified as Streptomyces canus.

Research on marine actinobacteria in India.

Marine actinobacteriology is one of the major emerging areas of research in tropics. Marine actinobacteria occur on the sediments and in water and also other biomass (mangrove) and substrates (animal). These organisms are gaining importance not only for their taxonomic and ecological perspectives, but also for their unique metabolites and enzymes. Many earlier studies on these organisms were confined only to the temperate regions. In tropical environment, investigations on them have gained importance only in the last two decades. So far, from the Indian peninsula, 41 species of actinobacteria belonging to 8 genera have been recorded. The genus, Streptomyces of marine origin has been more frequently recorded. Of 9 maritime states of India, only 4 have been extensively covered for the study of marine actinobacteria. Most of the studies conducted pertain to isolation, identification and maintenance of these organisms in different culture media. Further, attention has been focused on studying their antagonistic properties against different pathogens. Their biotechnological potentials are yet to be fully explored.

Water quality and phytoplankton characteristics in the Palk Bay, southeast coast of India.

The present study was carried out to determine the water quality in terms of physicochemical characteristics and plankton distribution in the coastal waters of Kattumavadi, Palk Bay for a period of one year from April 2002 to March 2003. Air and surface water temperatures varied from 28 degrees C to 32.50 degrees C and from 27.5 to 32.0 degrees C while light extinction coefficient (LEC) varied between 0.95 and 1.85. Salinity ranged from 26.0 to 34.5 per thousand and the pH ranged between 7.95 and 8.35. Variation in dissolved oxygen content was from 4.15 to 7.18 ml(-1), and the particulate organic carbon (POC) content varied between 0.49 and 2.28 mgCl(-1). Concentrations of nutrients viz. nitrate (2.15 to 8.28 microM), nitrite (0.12 to 0.62 microM), inorganic phosphate (1.28 to 2.15 microM) and reactive silicate (5.15 to 12.52 microM) also varied independently. Chlorophyll a content ranged from 0.28 to 1.48 mg m(-3) and the primary productivity, from 4.19 to 16.08 mgCm(-3) hr(-1). The present study recorded a total of 43 species of planktonic diatoms and two species of blue-green algae. Population density of phytoplankton varied from 18,000 to 34,000 cells l(-1). Percentage composition, of the diatoms showed minimum values during the monsoon season and the maximum values during the premonsoon season.