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1.
J Vis Exp ; (169)2021 03 31.
Article in English | MEDLINE | ID: mdl-33871447

ABSTRACT

The clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system has democratized genome-editing in eukaryotic cells and led to the development of numerous innovative applications. However, delivery of the Cas9 protein and single-guide RNA (sgRNA) into target cells can be technically challenge. Classical viral vectors, such as those derived from lentiviruses (LVs) or adeno-associated viruses (AAVs), allow for efficient delivery of transgenes coding for the Cas9 protein and its associated sgRNA in many primary cells and in vivo. Nevertheless, these vectors can suffer from drawbacks such as integration of the transgene in the target cell genome, a limited cargo capacity, and long-term expression of the Cas9 protein and guide RNA in target cells. To overcome some of these problems, a delivery vector based on the murine Leukemia virus (MLV) was developed to package the Cas9 protein and its associated guide RNA in the absence of any coding transgene. By fusing the Cas9 protein to the C-terminus of the structural protein Gag from MLV, virus-like particles (VLPs) loaded with the Cas9 protein and sgRNA (named "Nanoblades") were formed. Nanoblades can be collected from the culture medium of producer cells, purified, quantified, and used to transduce target cells and deliver the active Cas9/sgRNA complex. Nanoblades deliver their ribonucleoprotein (RNP) cargo transiently and rapidly in a wide range of primary and immortalized cells and can be programmed for other applications, such as transient transcriptional activation of targeted genes, using modified Cas9 proteins. Nanoblades are capable of in vivo genome-editing in the liver of injected adult mice and in oocytes to generate transgenic animals. Finally, they can be complexed with donor DNA for "transfection-free" homology-directed repair. Nanoblade preparation is simple, relatively low-cost, and can be easily carried out in any cell biology laboratory.


Subject(s)
CRISPR-Associated Protein 9/genetics , CRISPR-Cas Systems/genetics , Ribonucleoproteins/genetics , Humans , Transfection
2.
Mol Cell ; 74(1): 196-211.e11, 2019 04 04.
Article in English | MEDLINE | ID: mdl-30799147

ABSTRACT

The compendium of RNA-binding proteins (RBPs) has been greatly expanded by the development of RNA-interactome capture (RIC). However, it remained unknown if the complement of RBPs changes in response to environmental perturbations and whether these rearrangements are important. To answer these questions, we developed "comparative RIC" and applied it to cells challenged with an RNA virus called sindbis (SINV). Over 200 RBPs display differential interaction with RNA upon SINV infection. These alterations are mainly driven by the loss of cellular mRNAs and the emergence of viral RNA. RBPs stimulated by the infection redistribute to viral replication factories and regulate the capacity of the virus to infect. For example, ablation of XRN1 causes cells to be refractory to SINV, while GEMIN5 moonlights as a regulator of SINV gene expression. In summary, RNA availability controls RBP localization and function in SINV-infected cells.


Subject(s)
Epithelial Cells/virology , Gene Expression Profiling/methods , RNA, Viral/genetics , RNA-Binding Proteins/genetics , Sindbis Virus/genetics , Transcriptome , Uterine Cervical Neoplasms/virology , 5' Untranslated Regions , Binding Sites , Epithelial Cells/metabolism , Exoribonucleases/genetics , Exoribonucleases/metabolism , Female , Gene Expression Regulation, Viral , HEK293 Cells , HeLa Cells , Host-Pathogen Interactions , Humans , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/metabolism , Protein Binding , RNA, Viral/metabolism , RNA-Binding Proteins/metabolism , Ribonucleoproteins, Small Nuclear/genetics , Ribonucleoproteins, Small Nuclear/metabolism , SMN Complex Proteins , Sindbis Virus/growth & development , Sindbis Virus/metabolism , Sindbis Virus/pathogenicity , Uterine Cervical Neoplasms/genetics , Uterine Cervical Neoplasms/metabolism , Virus Replication
3.
Nat Commun ; 10(1): 45, 2019 01 03.
Article in English | MEDLINE | ID: mdl-30604748

ABSTRACT

Programmable nucleases have enabled rapid and accessible genome engineering in eukaryotic cells and living organisms. However, their delivery into target cells can be technically challenging when working with primary cells or in vivo. Here, we use engineered murine leukemia virus-like particles loaded with Cas9-sgRNA ribonucleoproteins (Nanoblades) to induce efficient genome-editing in cell lines and primary cells including human induced pluripotent stem cells, human hematopoietic stem cells and mouse bone-marrow cells. Transgene-free Nanoblades are also capable of in vivo genome-editing in mouse embryos and in the liver of injected mice. Nanoblades can be complexed with donor DNA for "all-in-one" homology-directed repair or programmed with modified Cas9 variants to mediate transcriptional up-regulation of target genes. Nanoblades preparation process is simple, relatively inexpensive and can be easily implemented in any laboratory equipped for cellular biology.


Subject(s)
CRISPR-Associated Protein 9/genetics , Gene Editing/methods , Genetic Vectors/genetics , RNA, Guide, Kinetoplastida/genetics , Ribonucleoproteins/genetics , Animals , Cell Line, Tumor , DNA Repair/genetics , Embryo, Mammalian , Fibroblasts , Gene Editing/economics , Genome/genetics , HEK293 Cells , Hematopoietic Stem Cells , Humans , Induced Pluripotent Stem Cells , Leukemia Virus, Murine/genetics , Macrophages , Mice , Mice, Inbred C57BL , Primary Cell Culture , Transcriptional Activation/genetics
4.
Methods ; 118-119: 137-145, 2017 04 15.
Article in English | MEDLINE | ID: mdl-28286323

ABSTRACT

Characterization of RNA-binding protein interactions with RNA became inevitable to properly understand the cellular mechanisms involved in gene expression regulation. Structural investigations bring information at the atomic level on these interactions and complementary methods such as Isothermal Titration Calorimetry (ITC) and Surface Plasmon Resonance (SPR) are commonly used to quantify the affinity of these RNA-protein complexes and evaluate the effect of mutations affecting these interactions. The switchSENSE technology has recently been developed and already successfully used to investigate protein interactions with different types of binding partners (DNA, protein/peptide or even small molecules). In this study, we show that this method is also well suited to study RNA binding proteins (RBPs). We could successfully investigate the binding to RNA of three different RBPs (Fox-1, SRSF1 and Tra2-ß1) and obtained KD values very close to the ones determined previously by SPR or ITC for these complexes. These results show that the switchSENSE technology can be used as an alternative method to study protein-RNA interactions with KD values in the low micromolar (10-6) to nanomolar (10-7-10-9) and probably picomolar (10-10-10-12) range. The absence of labelling requirement for the analyte molecules and the use of very low amounts of protein and RNA molecules make the switchSENSE approach very attractive compared to other methods. Finally, we discuss about the potential of this approach in obtaining more sophisticated information such as structural conformational changes upon RBP binding to RNA.


Subject(s)
DNA, Single-Stranded/genetics , Nucleic Acid Hybridization/methods , Protein Array Analysis/methods , RNA-Binding Proteins/genetics , RNA/genetics , Base Sequence , Binding Sites , Calorimetry/methods , DNA, Single-Stranded/metabolism , Humans , Kinetics , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Protein Array Analysis/instrumentation , Protein Binding , RNA/metabolism , RNA Splicing Factors/genetics , RNA Splicing Factors/metabolism , RNA-Binding Proteins/metabolism , Serine-Arginine Splicing Factors/genetics , Serine-Arginine Splicing Factors/metabolism , Surface Plasmon Resonance/methods , Thermodynamics , Transcription, Genetic
5.
Prim Care ; 20(1): 155-65, 1993 Mar.
Article in English | MEDLINE | ID: mdl-8464937

ABSTRACT

Elderly people do use substances to alter mood and states of awareness. Detection is difficult because presenting symptoms are often those that are commonly associated with aging itself. All patients who present with symptoms of self-neglect, falls, cognitive and affective impairment, and social withdrawal should be screened for substance abuse. The CAGE and MAST, although not perfect, can be used. When abuse is found, the elderly should be treated as aggressively as their younger counterparts, with slow, careful detoxification and the use of some form of group therapy, such as AA.


Subject(s)
Alcoholism/diagnosis , Illicit Drugs , Psychotropic Drugs , Substance-Related Disorders/diagnosis , Aged , Alcoholism/psychology , Alcoholism/rehabilitation , Diagnosis, Differential , Humans , Neuropsychological Tests , Substance-Related Disorders/psychology , Substance-Related Disorders/rehabilitation
10.
Postgrad Med ; 71(2): 231-6, 1982 Feb.
Article in English | MEDLINE | ID: mdl-6799945

ABSTRACT

Diabetes mellitus, because of its prevalence and inherent chronicity, represents a major health threat to the elderly. However, some of the risk of diabetes-associated morbidity and mortality can be diminished with a regimen that takes into account special features of the disease in this age-group.


Subject(s)
Diabetes Mellitus , Adult , Aged , Cardiovascular Diseases/etiology , Diabetes Complications , Diabetes Mellitus/diagnosis , Diabetes Mellitus/diet therapy , Diabetes Mellitus/drug therapy , Diabetic Ketoacidosis/etiology , Female , Glucose Tolerance Test , Humans , Insulin/therapeutic use , Life Style , Male , Middle Aged , Obesity/complications , Patient Compliance , Retinal Diseases/etiology , Risk
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