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1.
J Breath Res ; 18(1)2023 Oct 12.
Article in English | MEDLINE | ID: mdl-37604132

ABSTRACT

Exhaled breath contains numerous volatile organic compounds (VOCs) known to be related to lung disease like asthma. Its collection is non-invasive, simple to perform and therefore an attractive method for the use even in young children. We analysed breath in children of the multicenter All Age Asthma Cohort (ALLIANCE) to evaluate if 'breathomics' have the potential to phenotype patients with asthma and wheeze, and to identify extrinsic risk factors for underlying disease mechanisms. A breath sample was collected from 142 children (asthma: 51, pre-school wheezers: 55, healthy controls: 36) and analysed using gas chromatography-mass spectrometry (GC/MS). Children were diagnosed according to Global Initiative for Asthma guidelines and comprehensively examined each year over up to seven years. Forty children repeated the breath collection after 24 or 48 months. Most breath VOCs differing between groups reflect the exposome of the children. We observed lower levels of lifestyle-related VOCs and higher levels of the environmental pollutants, especially naphthalene, in children with asthma or wheeze. Naphthalene was also higher in symptomatic patients and in wheezers with recent inhaled corticosteroid use. No relationships with lung function or TH2 inflammation were detected. Increased levels of naphthalene in asthmatics and wheezers and the relationship to disease severity could indicate a role of environmental or indoor air pollution for the development or progress of asthma. Breath VOCs might help to elucidate the role of the exposome for the development of asthma. The study was registered at ClinicalTrials.gov (NCT02496468).

2.
Clin Exp Immunol ; 204(1): 152-164, 2021 04.
Article in English | MEDLINE | ID: mdl-33202033

ABSTRACT

Levels of cytokines are used for in-depth characterization of patients with asthma; however, the variability over time might be a critical confounder. To analyze the course of serum cytokines in children, adolescents and adults with asthma and in healthy controls and to propose statistical methods to control for seasonal effects. Of 532 screened subjects, 514 (91·5%) were included in the All Age Asthma Cohort (ALLIANCE). The cohort included 279 children with either recurrent wheezing bronchitis (more than two episodes) or doctor-diagnosed asthma, 75 healthy controls, 150 adult asthmatics and 31 adult healthy controls. Blood samples were collected and 25 µl serum was used for analysis with the Bio-Plex Pr human cytokine 27-Plex assay. Mean age, body mass index and gender in the three groups of wheezers, asthmatic children and adult asthmatics were comparable to healthy controls. Wheezers (34·5%), asthmatic children (78·7%) and adult asthmatics (62·8%) were significantly more often sensitized compared to controls (4·5, 22 and 22·6%, respectively). Considering the entire cohort, interleukin (IL)-1ra, IL-4, IL-9, IL-17, macrophage inflammatory protein (MIP)-1- α and tumor necrosis factor (TNF)- α showed seasonal variability, whereas IL-1ß, IL-7, IL-8, IL-13, eotaxin, granulocyte colony-stimulating factor (G-CSF), interferon gamma-induced protein (IP)-10, MIP-1 ß and platelet-derived growth factor (PDGF)-BB did not. Significant differences between wheezers/asthmatics and healthy controls were observed for IL-17 and PDGF-BB, which remained stable after adjustment for the seasonality of IL-17. Seasonality has a significant impact on serum cytokine levels in patients with asthma. Because endotyping has achieved clinical importance to guide individualized patient-tailored therapy, it is important to account for seasonal effects.


Subject(s)
Asthma/immunology , Cytokines/immunology , Respiratory Sounds/immunology , Seasons , Adolescent , Adult , Algorithms , Asthma/blood , Asthma/diagnosis , Child , Child, Preschool , Cohort Studies , Cytokines/blood , Female , Humans , Male , Models, Theoretical , Respiratory Sounds/diagnosis , Time Factors
3.
Cancer Biol Ther ; 18(12): 917-926, 2017 Dec 02.
Article in English | MEDLINE | ID: mdl-29020502

ABSTRACT

Glioblastoma is a lethal form of brain tumour usually treated by surgical resection followed by radiotherapy and an alkylating chemotherapeutic agent. Key to the success of this multimodal approach is maintaining apoptotic sensitivity of tumour cells to the alkylating agent. This initial treatment likely establishes conditions contributing to development of drug resistance as alkylating agents form the O6-methylguanine adduct. This activates the mismatch repair (MMR) process inducing apoptosis and mutagenesis. This review describes key juxtaposed drivers in the balance between alkylation induced mutagenesis and apoptosis. Mutations in MMR genes are the probable drivers for alkylation based drug resistance. Critical to this interaction are the dose-response and temporal interactions between adduct formation and MMR mutations. The precision in dose interval, dose-responses and temporal relationships dictate a role for alkylating agents in either promoting experimental tumour formation or inducing tumour cell death with chemotherapy. Importantly, this resultant loss of chemotherapeutic selective pressure provides opportunity to explore novel therapeutics and appropriate combinations to minimise alkylation based drug resistance and tumour relapse.


Subject(s)
DNA Adducts/genetics , Drug Resistance, Neoplasm/genetics , Glioblastoma/drug therapy , Neoplasm Recurrence, Local/drug therapy , Antineoplastic Agents, Alkylating/adverse effects , Antineoplastic Agents, Alkylating/therapeutic use , Apoptosis/genetics , DNA Mismatch Repair/genetics , DNA Repair/genetics , Glioblastoma/genetics , Glioblastoma/pathology , Guanine/analogs & derivatives , Guanine/metabolism , Humans , Mutation/genetics , Neoplasm Recurrence, Local/genetics , Neoplasm Recurrence, Local/pathology
4.
Mol Ecol Resour ; 16(4): 979-90, 2016 Jul.
Article in English | MEDLINE | ID: mdl-26858004

ABSTRACT

Genotyping-by-sequencing (GBS) and related methods are increasingly used for studies of non-model organisms from population genetic to phylogenetic scales. We present GIbPSs, a new genotyping toolkit for the analysis of data from various protocols such as RAD, double-digest RAD, GBS, and two-enzyme GBS without a reference genome. GIbPSs can handle paired-end GBS data and is able to assign reads from both strands of a restriction fragment to the same locus. GIbPSs is most suitable for population genetic and phylogeographic analyses. It avoids genotyping errors due to indel variation by identifying and discarding affected loci. GIbPSs creates a genotype database that offers rich functionality for data filtering and export in numerous formats. We performed comparative analyses of simulated and real GBS data with GIbPSs and another program, pyRAD. This program accounts for indel variation by aligning homologous sequences. GIbPSs performed better than pyRAD in several aspects. It required much less computation time and displayed higher genotyping accuracy. GIbPSs retained smaller numbers of loci overall in analyses of real GBS data. It nevertheless delivered more complete genotype matrices with greater locus overlap between individuals and greater numbers of loci sampled in all individuals.


Subject(s)
Computational Biology/methods , Genotyping Techniques/methods , Sequence Analysis, DNA/methods , Genetics, Population/methods , Phylogeography/methods
5.
Br J Radiol ; 86(1023): 20120500, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23392194

ABSTRACT

OBJECTIVE: To compare the dose-optimisation potential of a smoothing filtered backprojection (FBP) and a hybrid FBP/iterative algorithm to that of a standard FBP algorithm at three slice thicknesses for hepatic lesion detection with multidetector CT. METHODS: A liver phantom containing a 9.5-mm opacity with a density of 10 HU below background was scanned at 125, 100, 75, 50 and 25 mAs. Data were reconstructed with standard FBP (B), smoothing FBP (A) and hybrid FBP/iterative (iDose(4)) algorithms at 5-, 3- and 1-mm collimation. 10 observers marked opacities using a four-point confidence scale. Jackknife alternative free-response receiver operating characteristic figure of merit (FOM), sensitivity and noise were calculated. RESULTS: Compared with the 125-mAs/5-mm setting for each algorithm, significant reductions in FOM (p<0.05) and sensitivity (p<0.05) were found for all three algorithms for all exposures at 1-mm thickness and for all slice thicknesses at 25 mAs, with the exception of the 25-mAs/5-mm setting for the B algorithm. Sensitivity was also significantly reduced for all exposures at 3-mm thickness for the A algorithm (p<0.05). Noise for the A and iDose(4) algorithms was approximately 13% and 21% lower, respectively, than for the B algorithm. CONCLUSION: Superior performance for hepatic lesion detection was not shown with either a smoothing FBP algorithm or a hybrid FBP/iterative algorithm compared with a standard FBP technique, even though noise reduction with thinner slices was demonstrated with the alternative approaches. ADVANCES IN KNOWLEDGE: Reductions in image noise with non-standard CT algorithms do not necessarily translate to an improvement in low-contrast object detection.


Subject(s)
Algorithms , Liver Diseases/diagnostic imaging , Multidetector Computed Tomography/methods , Humans , Multidetector Computed Tomography/standards , Phantoms, Imaging , Radiation Dosage
6.
Australas Phys Eng Sci Med ; 28(3): 175-8, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16250472

ABSTRACT

This study involved the development of an objective method to compare the performance of five CT scanners for the purpose of benchmarking. The method used to assess the scanners was to determine the dose-normalised noise at a spatial resolution of 5.5 cm(-1). This gave a dose-normalised percent noise between 0.37% and 0.76%. The scanners were also assessed for radiation dose to patients undergoing abdomen and head CT examinations. Patients' dose-length product (DLP) for the abdomen clinical examinations varied from 305 to 685 mGy-cm, and for the head clinical examinations from 333 to 900 mGy-cm. The study results demonstrated that the comparison of dose and spatial resolution normalised percent noise levels is a useful method of comparing CT scanner performance.


Subject(s)
Benchmarking/methods , Equipment Failure Analysis/methods , Equipment Failure Analysis/standards , Quality Assurance, Health Care/methods , Radiometry/methods , Tomography, X-Ray Computed/instrumentation , Tomography, X-Ray Computed/standards , Australia , Benchmarking/standards , Equipment Design , Guidelines as Topic , Quality Assurance, Health Care/standards , Quality Control , Radiation Dosage , Radiometry/standards , Reference Standards , Reproducibility of Results , Sensitivity and Specificity
7.
Biol Lett ; 1(2): 147-50, 2005 Jun 22.
Article in English | MEDLINE | ID: mdl-17148151

ABSTRACT

Cetacean strandings elicit much community and scientific interest, but few quantitative analyses have successfully identified environmental correlates to these phenomena. Data spanning 1920-2002, involving a total of 639 stranding events and 39 taxa groups from southeast Australia, were found to demonstrate a clear 11-13- year periodicity in the number of events through time. These data positively correlated with the regional persistence of both zonal (westerly) and meridional (southerly) winds, reflecting general long-term and large-scale shifts in sea-level pressure gradients. Periods of persistent zonal and meridional winds result in colder and presumably nutrient-rich waters being driven closer to southern Australia, resulting in increased biological activity in the water column during the spring months. These observations suggest that large-scale climatic events provide a powerful distal influence on the propensity for whales to strand in this region. These patterns provide a powerful quantitative framework for testing hypotheses regarding environmental links to strandings and provide managers with a potential predictive tool to prepare for years of peak stranding activity.


Subject(s)
Cetacea , Climate , Animals , Oceanography , Periodicity , Tasmania , Victoria , Wind
8.
Mol Biol Cell ; 12(11): 3644-57, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11694595

ABSTRACT

Under stressful conditions organisms adjust the synthesis, processing, and trafficking of molecules to allow survival from and recovery after stress. In baker's yeast Saccharomyces cerevisiae, the cellular production of ribosomes is tightly matched with environmental conditions and nutrient availability through coordinate transcriptional regulation of genes involved in ribosome biogenesis. On the basis of stress-responsive gene expression and functional studies, we have identified a novel, evolutionarily conserved gene, EMG1, that has similar stress-responsive gene expression patterns as ribosomal protein genes and is required for the biogenesis of the 40S ribosomal subunit. The Emg1 protein is distributed throughout the cell; however, its nuclear localization depends on physical interaction with a newly characterized nucleolar protein, Nop14. Yeast depleted of Nop14 or harboring a temperature-sensitive allele of emg1 have selectively reduced levels of the 20S pre-rRNA and mature18S rRNA and diminished cellular levels of the 40S ribosomal subunit. Neither Emg1 nor Nop14 contain any characterized functional motifs; however, isolation and functional analyses of mammalian orthologues of Emg1 and Nop14 suggest that these proteins are functionally conserved among eukaryotes. We conclude that Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.


Subject(s)
Conserved Sequence , Fungal Proteins/genetics , Genes, Fungal/physiology , Nuclear Proteins/genetics , RNA Processing, Post-Transcriptional , RNA, Fungal/metabolism , RNA, Messenger/metabolism , Ribosomal Proteins/genetics , Ribosomes/metabolism , Saccharomyces cerevisiae Proteins/genetics , Amino Acid Sequence , Aminoglycosides , Animals , Anti-Bacterial Agents/pharmacology , Fungal Proteins/metabolism , Heat-Shock Response , Heating , Humans , Mice , Microscopy, Fluorescence/methods , Molecular Sequence Data , Nuclear Proteins/metabolism , RNA, Ribosomal, 18S/metabolism , Ribosomal Proteins/metabolism , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Sequence Homology, Amino Acid
9.
Genes Dev ; 15(16): 2134-45, 2001 Aug 15.
Article in English | MEDLINE | ID: mdl-11511544

ABSTRACT

Eukaryotic heat shock transcription factors (HSF) regulate an evolutionarily conserved stress-response pathway essential for survival against a variety of environmental and developmental stresses. Although the highly similar HSF family members have distinct roles in responding to stress and activating target gene expression, the mechanisms that govern these roles are unknown. Here we identify a loop within the HSF1 DNA-binding domain that dictates HSF isoform specific DNA binding in vitro and preferential target gene activation by HSF family members in both a yeast transcription assay and in mammalian cells. These characteristics of the HSF1 loop region are transposable to HSF2 and sufficient to confer DNA-binding specificity, heat shock inducible HSP gene expression and protection from heat-induced apoptosis in vivo. In addition, the loop suppresses formation of the HSF1 trimer under basal conditions and is required for heat-inducible trimerization in a purified system in vitro, suggesting that this domain is a critical part of the HSF1 heat-stress-sensing mechanism. We propose that this domain defines a signature for HSF1 that constitutes an important determinant for how cells utilize a family of transcription factors to respond to distinct stresses.


Subject(s)
DNA-Binding Proteins/metabolism , DNA/metabolism , Heat Stress Disorders/metabolism , Amino Acid Sequence , Animals , Apoptosis/physiology , DNA-Binding Proteins/chemistry , HSP70 Heat-Shock Proteins/metabolism , Heat Shock Transcription Factors , Mice , Molecular Sequence Data , Protein Structure, Secondary , Protein Structure, Tertiary , Saccharomyces cerevisiae/metabolism , Sequence Homology, Amino Acid , Temperature , Transcription Factors
10.
J Immunol ; 167(3): 1566-74, 2001 Aug 01.
Article in English | MEDLINE | ID: mdl-11466378

ABSTRACT

Cell-mediated cytotoxicity plays an important role in the clearance of noncytopathic viruses from infected tissues. Perforin-dependent cytotoxic mechanisms have been noted to play an important role in the clearance of infections from multiple extrahepatic organs. In contrast, mice with defects in the Fas/Fas ligand (FasL)-mediated cytotoxicity pathway exhibit delayed clearance of adenovirus from the liver without apparent delay in the clearance of viral infections from extrahepatic organs. The present studies examined the role of cytotoxic effector mechanisms in intrahepatic immune responses to a replication-defective, recombinant beta-galactosidase-encoding adenovirus (AdCMV-lacZ). Delayed clearance of AdCMV-lacZ from the livers of FasL-defective B6.gld mice, but not perforin-deficient B6.pfp(-/-) mice, was noted despite no significant differences in initial hepatic CD8(+) T cell IFN-gamma or TNF responses or in activation of intrahepatic cytotoxic lymphocytes cells capable of killing AdCMV-lacZ-infected fibroblast targets. In contrast, AdCMV-lacZ-infected hepatocyte targets were far more sensitive to killing by intrahepatic cytotoxic lymphocytes from B6.pfp(-/-) than from B6.gld mice, and residual levels of virus-specific killing of hepatocyte targets by FasL-defective B6.gld CTL were blocked by TNF inhibition. These results suggest that inherent resistance of hepatocytes to cytotoxicity mediated by perforin-dependent mechanisms leaves Fas/FasL-dependent, cell-mediated cytotoxicity as the major pathway for CTL-mediated killing of virally infected hepatocytes and accounts for the more prominent role of perforin-independent anti-viral mechanisms in immune responses in the liver.


Subject(s)
Hepatocytes/immunology , Hepatocytes/virology , Membrane Glycoproteins/physiology , T-Lymphocytes, Cytotoxic/immunology , T-Lymphocytes, Cytotoxic/virology , 3T3 Cells , Adenoviridae/genetics , Animals , CD4-Positive T-Lymphocytes/immunology , CD4-Positive T-Lymphocytes/metabolism , CD4-Positive T-Lymphocytes/virology , CD8-Positive T-Lymphocytes/enzymology , CD8-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/metabolism , CD8-Positive T-Lymphocytes/virology , Cell Line , Cytomegalovirus/genetics , Cytotoxicity Tests, Immunologic , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/metabolism , Fas Ligand Protein , Genetic Vectors/metabolism , Granzymes , H-2 Antigens/immunology , Hepatocytes/cytology , Hepatocytes/enzymology , Humans , Immunity, Innate/genetics , Interferon-gamma/biosynthesis , Intracellular Fluid/immunology , Intracellular Fluid/metabolism , Lac Operon/genetics , Liver/enzymology , Liver/immunology , Liver/metabolism , Liver/virology , Lymphocyte Activation/genetics , Membrane Glycoproteins/deficiency , Membrane Glycoproteins/genetics , Mice , Mice, Inbred C57BL , Mice, Inbred DBA , Mice, Knockout , Perforin , Pore Forming Cytotoxic Proteins , Serine Endopeptidases/metabolism , Spleen/immunology , Spleen/metabolism , Spleen/virology , Tumor Cells, Cultured , Tumor Necrosis Factor-alpha/biosynthesis , fas Receptor/genetics
11.
Mol Microbiol ; 40(5): 1165-74, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11401720

ABSTRACT

The yeast Candida glabrata rapidly autoactivates transcription of the AMT1 gene in response to potentially toxic copper levels through the copper-inducible binding of the Amt1 transcription factor to a metal response element (MRE) within a positioned nucleosome. Our previous studies have characterized the role of a 16 bp homopolymeric dA:dT DNA structural element in facilitating rapid Amt1 access to the AMT1 promoter nucleosomal MRE. In this study, we have used the genetically more facile yeast Saccharomyces cerevisiae to identify additional cellular factors that are important for promoting rapid autoactivation of the AMT1 gene in response to toxic copper levels. We demonstrate that the Swi/Snf nucleosome remodelling complex and the histone acetyltransferase Gcn5 are both essential for AMT1 gene autoregulation, and that the requirement for these chromatin remodelling factors is target gene specific. Chromatin accessibility measurements performed in vitro and in vivo indicate that part of the absolute requirement for these factors is derived from their involvement in facilitating nucleosomal access to the AMT1 promoter MRE. Additionally, these data implicate the involvement of Swi/Snf and Gcn5 at multiple levels of AMT1 gene autoregulation.


Subject(s)
Candida/metabolism , Copper/metabolism , DNA-Binding Proteins/metabolism , Drosophila Proteins , Fungal Proteins/metabolism , Protein Kinases/metabolism , RNA-Binding Proteins , Ribonucleoprotein, U1 Small Nuclear/metabolism , Saccharomyces cerevisiae Proteins , Transcription Factors/metabolism , Acetylation , Acetyltransferases/genetics , Acetyltransferases/metabolism , Biodegradation, Environmental , Candida/genetics , Carrier Proteins , Chromatin/metabolism , DNA-Binding Proteins/genetics , Fungal Proteins/genetics , Histone Acetyltransferases , Histones/metabolism , Metallothionein/genetics , Metallothionein/metabolism , Nucleosomes/metabolism , Promoter Regions, Genetic , Protein Kinases/genetics , Ribonucleoprotein, U1 Small Nuclear/genetics , Transcription Factors/genetics
12.
Proc Natl Acad Sci U S A ; 98(12): 6842-7, 2001 Jun 05.
Article in English | MEDLINE | ID: mdl-11391005

ABSTRACT

The trace metal copper (Cu) plays an essential role in biology as a cofactor for many enzymes that include Cu, Zn superoxide dismutase, cytochrome oxidase, ceruloplasmin, lysyl oxidase, and dopamine beta-hydroxylase. Consequently, Cu transport at the cell surface and the delivery of Cu to intracellular compartments are critical events for a wide variety of biological processes. The components that orchestrate intracellular Cu trafficking and their roles in Cu homeostasis have been elucidated by the studies of model microorganisms and by the characterizations of molecular basis of Cu-related genetic diseases, including Menkes disease and Wilson disease. However, little is known about the mechanisms for Cu uptake at the plasma membrane and the consequences of defects in this process in mammals. Here, we show that the mouse Ctr1 gene encodes a component of the Cu transport machinery and that mice heterozygous for Ctr1 exhibit tissue-specific defects in copper accumulation and in the activities of copper-dependent enzymes. Mice completely deficient for Ctr1 exhibit profound growth and developmental defects and die in utero in mid-gestation. These results demonstrate a crucial role for Cu acquisition through the Ctr1 transporter for mammalian Cu homeostasis and embryonic development.


Subject(s)
Cation Transport Proteins , Copper/metabolism , Embryonic and Fetal Development , Membrane Proteins/physiology , Saccharomyces cerevisiae Proteins , Animals , Cell Line , Copper Transporter 1 , Female , Homeostasis , Humans , Male , Mice , Mice, Inbred C57BL , Pregnancy , Saccharomyces cerevisiae/genetics
13.
J Biol Chem ; 276(23): 20529-35, 2001 Jun 08.
Article in English | MEDLINE | ID: mdl-11274192

ABSTRACT

Copper is an essential nutrient that serves as a co-factor for enzymes involved in critical cellular processes including energy generation, peptide hormone maturation, oxidative stress protection, and iron homeostasis. Although genes have been identified from yeast and mammals encoding a homologous subunit of a plasma membrane high affinity copper transporter, the presence of additional subunits that function as part of a copper transport complex has not been reported. We observed that ctr4(+), a previously identified copper transport protein from the fission yeast Schizosaccharomyces pombe, fails to complement bakers' yeast cells defective in high affinity copper transport and fails to be targeted to the plasma membrane. However, selection for S. pombe genes, which, when co-expressed with Ctr4, confer high affinity copper transport to S. cerevisiae cells resulted in the identification of ctr5(+). Both Ctr4 and Ctr5 are integral membrane proteins, are co-regulated by copper levels and the copper-sensing transcription factor Cuf1, physically associate in vivo, are interdependent for secretion to the plasma membrane, and are each essential for high affinity copper transport. These studies in S. pombe identify Ctr4 and Ctr5 as components of a novel eukaryotic heteromeric plasma membrane complex that is essential for high affinity copper transport.


Subject(s)
Carrier Proteins/metabolism , Cation Transport Proteins , Copper/metabolism , Membrane Proteins/metabolism , Schizosaccharomyces pombe Proteins , Schizosaccharomyces/metabolism , Amino Acid Sequence , Biological Transport , Carrier Proteins/chemistry , Cell Membrane/metabolism , Membrane Proteins/chemistry , Molecular Sequence Data , SLC31 Proteins
14.
Eur J Immunol ; 30(10): 2900-7, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11069072

ABSTRACT

In vivo TNF inhibition has been observed to ameliorate the disease process attributed to T cell-dependent immune responses such as those generated during graft-vs.-host disease. The present studies were designed to evaluate whether TNF/TNF receptor (TNFR)1 and TNF/TNFR2 interactions were involved in the generation of allospecific T cell responses. Splenic lymphocyte populations were obtained from TNFR1- or TNFR2-deficient B6 mice and from control B6 mice. These responder cells were cultured with irradiated MHC class II-disparate B6.C-H-2bm12 (bm12) or MHC class I-disparate B6.C-H-2bm1 (bm1) or irradiated syngeneic stimulator cells for 3 days before assay of [3H]thymidine incorporation. IL-2 levels of the mixed lymphocyte culture (MLC) supernatants were assessed by enzyme-linked immunosorbent assay. With MHC class II-disparate bm12 stimulator cells, a significant reduction in T cell proliferation was observed utilizing TNFR2-deficient CD4+ responder T cells, but not when using TNFR1 -deficient CD4+ responder T cells. A significant decrease in proliferation of TNFR1-deficient CD8+ responder cells, but not of TNFR2-deficient CD8 responder T cells was observed after stimulation with MHC class I-disparate bm1 stimulator cells. IL-2 levels were lower in MLC utilizing MHC class I stimulators and TNFR1-deficient responders or MHC class II stimulators and TNFR2-deficient responders. These results indicate that TNF/TNFR2 interactions promote MHC class II-stimulated alloresponses, while TNF/TNFR1 interactions promote MHC class I-stimulated alloresponses.


Subject(s)
Antigens, CD/immunology , H-2 Antigens/immunology , Histocompatibility Antigens Class II/immunology , Receptors, Tumor Necrosis Factor/immunology , T-Lymphocyte Subsets/immunology , Tumor Necrosis Factor-alpha/physiology , Animals , Antigens, CD/genetics , CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Cells, Cultured , Female , Immunoglobulin Heavy Chains/chemistry , Immunoglobulin gamma-Chains , Interleukin-2/metabolism , Lymphocyte Activation/drug effects , Lymphocyte Culture Test, Mixed , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Receptors, Tumor Necrosis Factor/chemistry , Receptors, Tumor Necrosis Factor/genetics , Receptors, Tumor Necrosis Factor, Type I , Receptors, Tumor Necrosis Factor, Type II , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/pharmacology , Tumor Necrosis Factor-alpha/antagonists & inhibitors
15.
J Clin Immunol ; 20(5): 379-88, 2000 Sep.
Article in English | MEDLINE | ID: mdl-11051280

ABSTRACT

Administration of a tumor necrosis factor (TNF) inhibitor-encoding adenoviral vector decreases the severity of colonic inflammation in a DBA/2-->B6D2F1 murine model of colonic graft-versus-host disease (GVHD). The present studies evaluated the effect of TNF blockade on the splenic and colonic T-cell responses. cDNA encoding an artificial fusion protein consisting of the extracellular domain of the human 55-kDa receptor for TNF fused to a mouse IgG heavy chain was subcloned into an E1a-deficient adenoviral vector. Following transfer of DBA/2 T cells and bone marrow cells into irradiated B6D2F1 mice, the mice then received either the control adenovirus or the TNF inhibitor-encoding adenovirus. Splenic and colonic lymphocytes were isolated, stained with anti-H-2b, anti-H-2d, anti-CD3, anti-CD4, anti-CD8, and anti-CD45RB antibodies, and analyzed by flow cytometry. Splenic and colonic lymphocyte cytokine profiles also were assessed. More colonic T cells of donor origin were isolated from the control adenovirus recipients than from recipients of the TNF inhibitor encoding adenovirus (P = .027). Fewer CD4+ and CD8+ T cells were observed in colon but not in the spleen in the TNF inhibitor recipients. Fewer CD45RBlow (memory) T cells were observed in the CD4+ colonic lymphocytes isolated from the TNF inhibitor recipients than from controls. Importantly, lower levels of interleukin-2(IL-2) and interferon-gamma (INF-gamma) but not of IL-4 were observed in the lamina propria lymphocyte RNA isolated from the TNF inhibitor recipients. Infiltration and expansion of donor T cells and T-cell activation in the colon appear to be regulated by TNF during murine DBA/2 --> B6D2F1 gut GVHD.


Subject(s)
Colon/immunology , Graft vs Host Disease/immunology , Lymphocyte Activation , T-Lymphocytes/immunology , Tumor Necrosis Factor-alpha/physiology , Animals , CD4-Positive T-Lymphocytes/immunology , Cell Differentiation , Cloning, Molecular , Interferon-gamma/metabolism , Interleukin-2/metabolism , Intestinal Mucosa/immunology , Lymphocyte Count , Mice , Mice, Inbred DBA , Spleen/cytology , Spleen/immunology , T-Lymphocyte Subsets/immunology , T-Lymphocytes/cytology , T-Lymphocytes/metabolism , T-Lymphocytes/transplantation , Tumor Necrosis Factor-alpha/antagonists & inhibitors
16.
Gene ; 254(1-2): 87-96, 2000 Aug 22.
Article in English | MEDLINE | ID: mdl-10974539

ABSTRACT

A polymerase chain reaction (PCR)-based strategy was used to isolate a mouse cDNA (mCtr1) encoding a Cu transport protein. The deduced mCtr1 protein sequence exhibits 92% identity to human Ctr1, and has structural features in common with known high affinity Cu transporters from yeast. The expression of mouse Ctr1 functionally complements baker's yeast cells defective in high affinity Cu transport. Characterization of the mCtr1 genomic clone showed that the mCtr1 coding sequence is encompassed within four exons and that the mCtr1 locus maps to chromosome band 4C1-2. RNA blotting analysis demonstrated that mCtr1 is ubiquitously expressed, with high levels in liver and kidney, and early in embryonic development. Steady state mammalian Ctr1 mRNA levels were not changed in response to cellular Cu availability, which is distinct from the highly Cu-regulated transcription of genes encoding yeast high affinity Cu transporters. These studies provide fundamental information for further investigations on the function and regulation of Ctr1 in Cu acquisition in mammals.


Subject(s)
Cation Transport Proteins , Copper/metabolism , Fungal Proteins/genetics , Genes/genetics , Membrane Proteins/genetics , Saccharomyces cerevisiae Proteins , Amino Acid Sequence , Animals , Base Sequence , Chromosome Banding , Chromosome Mapping , Cloning, Molecular , Copper/administration & dosage , Copper Transporter 1 , DNA/chemistry , DNA/genetics , DNA/isolation & purification , DNA, Complementary/chemistry , DNA, Complementary/genetics , Embryo, Mammalian/metabolism , Exons , Fungal Proteins/metabolism , Gene Expression/drug effects , Gene Expression Regulation, Developmental , Genetic Complementation Test , HeLa Cells , Humans , In Situ Hybridization, Fluorescence , Introns , Male , Membrane Proteins/metabolism , Mice , Mice, Inbred Strains , Molecular Sequence Data , Mutation , RNA, Messenger/genetics , RNA, Messenger/metabolism , Rats , Rats, Sprague-Dawley , Saccharomyces cerevisiae/genetics , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Tissue Distribution
17.
Nature ; 406(6795): 504-7, 2000 Aug 03.
Article in English | MEDLINE | ID: mdl-10952309

ABSTRACT

Sea ice and oceanic boundaries have a dominant effect in structuring Antarctic marine ecosystems. Satellite imagery and historical data have identified the southern boundary of the Antarctic Circumpolar Current as a site of enhanced biological productivity. Meso-scale surveys off the Antarctic peninsula have related the abundances of Antarctic krill (Euphausia superba) and salps (Salpa thompsoni) to inter-annual variations in sea-ice extent. Here we have examined the ecosystem structure and oceanography spanning 3,500 km of the east Antarctic coastline, linking the scales of local surveys and global observations. Between 80 degrees and 150 degrees E there is a threefold variation in the extent of annual sea-ice cover, enabling us to examine the regional effects of sea ice and ocean circulation on biological productivity. Phytoplankton, primary productivity, Antarctic krill, whales and seabirds were concentrated where winter sea-ice extent is maximal, whereas salps were located where the sea-ice extent is minimal. We found enhanced biological activity south of the southern boundary of the Antarctic Circumpolar Current rather than in association with it. We propose that along this coastline ocean circulation determines both the sea-ice conditions and the level of biological productivity at all trophic levels.


Subject(s)
Ecosystem , Marine Biology , Animals , Antarctic Regions , Birds , Crustacea , Ice , Oceans and Seas , Phytoplankton , Population Dynamics , Whales
18.
J Biol Chem ; 275(43): 33244-51, 2000 Oct 27.
Article in English | MEDLINE | ID: mdl-10924521

ABSTRACT

Copper is an essential nutrient required for the activity of a number of enzymes with diverse biological roles. In the bakers' yeast Saccharomyces cerevisiae, copper is transported into cells by two high affinity copper transport proteins, Ctr1 and Ctr3. Although Ctr1 and Ctr3 are functionally redundant, they bear little homology at the amino acid sequence level. In this report, we characterize Ctr3 with respect to its localization, assembly, and post-transcriptional regulation. Ctr3 is an integral membrane protein that assembles as a trimer to form a competent copper uptake permease at the plasma membrane. Whereas the CTR1 and CTR3 genes are similarly regulated at the transcriptional level in response to copper, post-transcriptional regulation of these proteins is distinct. Unlike Ctr1, the Ctr3 transporter is neither regulated at the level of protein degradation nor endocytosis as a function of elevated copper levels. Our studies suggest that Ctr3 constitutes a fundamental module found in all eukaryotic high affinity copper transporters to date, which is sufficient for copper uptake but lacks elements for post-transcriptional regulation by copper.


Subject(s)
Antiporters/chemistry , Copper/metabolism , Fungal Proteins/chemistry , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/metabolism , Antiporters/analysis , Antiporters/physiology , Cation Transport Proteins , Gene Expression Regulation , SLC31 Proteins , Structure-Activity Relationship
19.
Arch Biochem Biophys ; 377(2): 296-303, 2000 May 15.
Article in English | MEDLINE | ID: mdl-10845707

ABSTRACT

Previous studies indicate that nitric oxide (NO) can serve as a regulator/disrupter of metal-metabolizing systems in cells and, indeed, this function may represent an important physiological and/or pathophysiological role for NO. In order to address possible mechanisms of this aspect of NO biology, the effect of NO on copper metabolism and toxicity in the yeast Saccharomyces cerevisiae was examined. Exposure of S. cerevisiae to NO resulted in an alteration of the activity of the copper-responsive transcription factor Acel. Low concentrations of the NO donor DEA/NO were found to slightly enhance copper-mediated activation of Acel. Since Acel regulates the expression of genes responsible for the protection of S. cerevisiae from metal toxicity, the effect of NO on the toxicity of copper toward S. cerevisiae was also examined. Interestingly, low concentrations of NO were also found to protect S. cerevisiae against the toxicity of copper. The effect of NO at high concentrations was, however, opposite. High concentrations of DEA/NO inhibited copper-mediated Acel activity. Correspondingly, high concentrations of DEA/NO (1 mM) dramatically enhanced copper toxicity. An intermediate concentration of DEA/NO (0.5 mM) exhibited a dual effect, enhancing toxicity at lower copper concentrations (<0.5 mM) and protecting at higher (> or =0.5 mM) copper concentrations. Thus, it is proposed that the ability of NO to both protect against (at low concentrations) and enhance (at high concentration) copper toxicity in S. cerevisiae is, at least partially, a result of its effect on Acel. The results of this study have implications for the role of NO as a mediator of metal metabolism.


Subject(s)
Copper/metabolism , DNA-Binding Proteins/metabolism , Nitric Oxide/metabolism , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/metabolism , Transcription Factors/metabolism , Copper/toxicity , Copper Sulfate/pharmacology , Dose-Response Relationship, Drug , Mutation , Nitric Oxide/physiology , Saccharomyces cerevisiae/genetics , Time Factors , Transcription, Genetic , Transformation, Genetic
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