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1.
Proc Natl Acad Sci U S A ; 113(38): 10714-9, 2016 09 20.
Article in English | MEDLINE | ID: mdl-27601658

ABSTRACT

Galactolipids [monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG)] are the hallmark lipids of photosynthetic membranes. The galactolipid synthases MGD1 and DGD1 catalyze consecutive galactosyltransfer reactions but localize to the inner and outer chloroplast envelopes, respectively, necessitating intermembrane lipid transfer. Here we show that the N-terminal sequence of DGD1 (NDGD1) is required for galactolipid transfer between the envelopes. Different diglycosyllipid synthases (DGD1, DGD2, and Chloroflexus glucosyltransferase) were introduced into the dgd1-1 mutant of Arabidopsis in fusion with N-terminal extensions (NDGD1 and NDGD2) targeting to the outer envelope. Reconstruction of DGDG synthesis in the outer envelope membrane was observed only with diglycosyllipid synthase fusion proteins carrying NDGD1, indicating that NDGD1 enables galactolipid translocation between envelopes. NDGD1 binds to phosphatidic acid (PA) in membranes and mediates PA-dependent membrane fusion in vitro. These findings provide a mechanism for the sorting and selective channeling of lipid precursors between the galactolipid pools of the two envelope membranes.


Subject(s)
Arabidopsis Proteins/genetics , Cell Membrane/genetics , Galactolipids/biosynthesis , Galactolipids/genetics , Galactosyltransferases/genetics , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis Proteins/metabolism , Cell Membrane/metabolism , Chloroplasts/genetics , Chloroplasts/metabolism , Galactolipids/metabolism , Galactosyltransferases/metabolism , Gene Expression Regulation, Plant , Membrane Lipids/genetics , Membrane Lipids/metabolism , Photosynthesis/genetics , Protein Transport/genetics
2.
Nucleic Acids Res ; 39(Database issue): D670-6, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21062828

ABSTRACT

The BRENDA (BRaunschweig ENzyme Database, http://www.brenda-enzymes.org) enzyme information system is the main collection of enzyme functional and property data for the scientific community. The majority of the data are manually extracted from the primary literature. The content covers information on function, structure, occurrence, preparation and application of enzymes as well as properties of mutants and engineered variants. The number of manually annotated references increased by 30% to more than 100,000, the number of ligand structures by 45% to almost 100,000. New query, analysis and data management tools were implemented to improve data processing, data presentation, data input and data access. BRENDA now provides new viewing options such as the display of the statistics of functional parameters and the 3D view of protein sequence and structure features. Furthermore a ligand summary shows comprehensive information on the BRENDA ligands. The enzymes are linked to their respective pathways and can be viewed in pathway maps. The disease text mining part is strongly enhanced. It is possible to submit new, not yet classified enzymes to BRENDA, which then are reviewed and classified by the International Union of Biochemistry and Molecular Biology. A new SBML output format of BRENDA kinetic data allows the construction of organism-specific metabolic models.


Subject(s)
Databases, Protein , Enzymes/chemistry , Enzymes/genetics , Enzymes/metabolism , Ligands , Metabolic Networks and Pathways , Protein Conformation , Software
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