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2.
Neurobiol Aging ; 33(5): 1010.e1-13, 2012 May.
Article in English | MEDLINE | ID: mdl-22118948

ABSTRACT

The Arctic (p. E693G) mutation in the amyloid-ß precursor protein (AßPP) facilitates amyloid-ß (Aß) protofibril formation and generates clinical symptoms of Alzheimer's disease (AD). Here, molecular details of Aß in post mortem brain were investigated with biochemical and morphological techniques. The basic structure of Arctic plaques resembled cotton wool plaques. However, they appeared ring-formed with Aß42-specific antibodies, but were actually targetoid, since the periphery and center of many parenchymal Aß deposits stained differently with mid-domain, N- and C-terminal Aß antibodies. Aß fibrils were similar in shape, albeit shorter than in sporadic AD brain, when examined by electron microscopy. Aßwild-type and Aßarctic codeposited and parenchymal deposits were highly enriched in both N- and C-terminally truncated Aß. In contrast, cerebral amyloid angiopathy (CAA) contained a substantial amount of Aß1-40. The absence of plaques with cores of fibrillary Aß might be due to the scarcity of full-length Aß, although other mechanisms could be involved. Our findings are discussed in relation to mechanisms and relevance of amyloid formation and to the clinical features of AD.


Subject(s)
Alzheimer Disease/genetics , Alzheimer Disease/metabolism , Amino Acid Substitution/genetics , Amyloid beta-Peptides/biosynthesis , Amyloid beta-Protein Precursor/genetics , Peptide Fragments/genetics , Plaque, Amyloid/genetics , Plaque, Amyloid/metabolism , Aged , Alzheimer Disease/physiopathology , Amyloid beta-Peptides/chemistry , Amyloid beta-Peptides/genetics , Amyloid beta-Protein Precursor/metabolism , Female , Humans , Male , Middle Aged , Molecular Weight , Peptide Fragments/biosynthesis , Peptide Fragments/chemistry , Plaque, Amyloid/pathology , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Structure, Tertiary/genetics
3.
EMBO J ; 29(10): 1659-73, 2010 May 19.
Article in English | MEDLINE | ID: mdl-20407419

ABSTRACT

Amassments of heterochromatin in somatic cells occur in close contact with the nuclear envelope (NE) but are gapped by channel- and cone-like zones that appear largely free of heterochromatin and associated with the nuclear pore complexes (NPCs). To identify proteins involved in forming such heterochromatin exclusion zones (HEZs), we used a cell culture model in which chromatin condensation induced by poliovirus (PV) infection revealed HEZs resembling those in normal tissue cells. HEZ occurrence depended on the NPC-associated protein Tpr and its large coiled coil-forming domain. RNAi-mediated loss of Tpr allowed condensing chromatin to occur all along the NE's nuclear surface, resulting in HEZs no longer being established and NPCs covered by heterochromatin. These results assign a central function to Tpr as a determinant of perinuclear organization, with a direct role in forming a morphologically distinct nuclear sub-compartment and delimiting heterochromatin distribution.


Subject(s)
Cell Nucleus/metabolism , Heterochromatin/chemistry , Nuclear Pore Complex Proteins/chemistry , Proto-Oncogene Proteins/chemistry , Animals , Chromatin/chemistry , Chromatin/metabolism , Gene Silencing , HeLa Cells , Humans , Mice , Microscopy, Confocal/methods , Microscopy, Electron, Transmission/methods , Microscopy, Fluorescence/methods , Models, Biological , Poliovirus/metabolism , RNA Interference
4.
J Biol Chem ; 282(1): 594-605, 2007 Jan 05.
Article in English | MEDLINE | ID: mdl-17085444

ABSTRACT

In yeast the homologous transcription factors Stp1 and Stp2 are synthesized as latent cytoplasmic precursors with N-terminal regulatory domains. In response to extracellular amino acids the regulatory domains are endoproteolytically excised by the plasma membrane-localized SPS sensor. The processed forms of Stp1 and Stp2 efficiently enter the nucleus and induce expression of amino acid permease genes. We recently reported that the inner nuclear membrane protein Asi1 is required to prevent unprocessed forms of Stp1 and Stp2, which ectopically enter the nucleus, from binding SPS sensor-regulated promoters. Here we show that Asi3, an Asi1 homolog, and Asi2 are integral proteins of the inner nuclear membrane that function in concert with Asi1. In cells lacking any of the three Asi proteins, unprocessed full-length forms of Stp1 and Stp2 constitutively induce SPS sensor-regulated genes. Our results demonstrate that the Asi proteins ensure the fidelity of SPS sensor signaling by maintaining the dormant, or repressed state, of gene expression in the absence of inducing signals. This study documents additional components of a novel mechanism controlling transcription in eukaryotic cells.


Subject(s)
DNA-Binding Proteins/metabolism , Membrane Proteins/metabolism , Nuclear Proteins/metabolism , RNA-Binding Proteins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Transcription Factors/metabolism , Cell Nucleus/metabolism , Gene Expression Regulation , Glycosylation , Microscopy, Immunoelectron , Models, Biological , Promoter Regions, Genetic , Protein Structure, Tertiary , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/chemistry , Subcellular Fractions/metabolism , Transcription, Genetic
5.
J Cell Biol ; 173(5): 695-707, 2006 Jun 05.
Article in English | MEDLINE | ID: mdl-16735580

ABSTRACT

Stp1 and Stp2 are homologous transcription factors in yeast that are synthesized as latent cytoplasmic precursors with NH2-terminal regulatory domains. In response to extracellular amino acids, the plasma membrane-localized Ssy1-Ptr3-Ssy5 (SPS) sensor endoproteolytically processes Stp1 and Stp2, an event that releases the regulatory domains. The processed forms of Stp1 and Stp2 efficiently target to the nucleus and bind promoters of amino acid permease genes. In this study, we report that Asi1 is an integral component of the inner nuclear membrane that maintains the latent characteristics of unprocessed Stp1 and Stp2. In cells lacking Asi1, full-length forms of Stp1 and Stp2 constitutively induce SPS sensor-regulated genes. The regulatory domains of Stp1 and Stp2 contain a conserved motif that confers Asi1-mediated control when fused to an unrelated DNA-binding protein. Our results indicate that latent precursor forms of Stp1 and Stp2 inefficiently enter the nucleus; however, once there, Asi1 restricts them from binding SPS sensor-regulated promoters. These findings reveal an unanticipated role of inner nuclear membrane proteins in controlling gene expression.


Subject(s)
DNA-Binding Proteins/drug effects , Membrane Proteins/pharmacology , Nuclear Envelope/metabolism , Nuclear Proteins/metabolism , Promoter Regions, Genetic/physiology , RNA-Binding Proteins/drug effects , Saccharomyces cerevisiae Proteins/drug effects , Saccharomyces cerevisiae Proteins/pharmacology , Transcription Factors/drug effects , Amino Acid Sequence , Carrier Proteins/metabolism , DNA-Binding Proteins/metabolism , Gene Expression Regulation, Fungal , Intracellular Signaling Peptides and Proteins , Membrane Proteins/genetics , Membrane Proteins/metabolism , Molecular Sequence Data , Multiprotein Complexes/metabolism , Mutation , Nuclear Proteins/drug effects , RNA-Binding Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Transcription Factors/metabolism
6.
Exp Cell Res ; 312(9): 1566-80, 2006 May 15.
Article in English | MEDLINE | ID: mdl-16542650

ABSTRACT

The coxsackie- and adenovirus receptor (CAR) is a transmembrane protein belonging to the immunoglobulin superfamily. The function of CAR as a virus receptor has been extensively analyzed, while its physiological role and expression pattern in adult tissues have remained less clear. CAR associates with epithelial tight junctions in vitro and mediates cell-cell adhesion. Using a set of affinity-purified antibodies, we show that CAR is predominantly expressed in epithelial cells lining the body cavities in adult mice, where it specifically co-localizes with the tight junction components ZO-1 and occludin. Notably, CAR could not be detected in endothelial cells of the vasculature, including brain capillaries. CAR expression correlated positively with the maturity of tight junctions and inversely with permeability. With a few exceptions, the two known CAR isoforms were co-expressed in most epithelial cells analyzed. A CAR mutant lacking the intracellular tail over-expressed in transgenic mice was diffusely localized over the plasma membrane, showing the importance of this domain for correct subcellular localization in vivo. We conclude that CAR is localized to epithelial tight junctions in vivo where it may play a role in the regulation of epithelial permeability and tissue homeostasis.


Subject(s)
Epithelial Cells/chemistry , Homeostasis/physiology , Receptors, Virus/analysis , Tight Junctions/chemistry , Animals , Cell Line , Cell Membrane Permeability/physiology , Coxsackie and Adenovirus Receptor-Like Membrane Protein , Epithelial Cells/cytology , Epithelial Cells/physiology , Fluorescent Antibody Technique , Gastrointestinal Tract/chemistry , Gastrointestinal Tract/cytology , Humans , Kidney/chemistry , Kidney/cytology , Liver/chemistry , Liver/cytology , Male , Membrane Proteins/analysis , Mice , Mice, Inbred C57BL , Mice, Transgenic , Microscopy, Immunoelectron , Occludin , Phosphoproteins/analysis , Prostate/chemistry , Prostate/cytology , Receptors, Virus/genetics , Receptors, Virus/physiology , Respiratory System/chemistry , Respiratory System/cytology , Tight Junctions/physiology , Tight Junctions/ultrastructure , Zonula Occludens-1 Protein
7.
EMBO Rep ; 7(5): 525-30, 2006 May.
Article in English | MEDLINE | ID: mdl-16514417

ABSTRACT

Nuclear actin and myosin 1 (NM1) are key regulators of gene transcription. Here, we show by biochemical fractionation of nuclear extracts, protein-protein interaction studies and chromatin immunoprecipitation assays that NM1 is part of a multiprotein complex that contains WICH, a chromatin remodelling complex containing WSTF (Williams syndrome transcription factor) and SNF2h. NM1, WSTF and SNF2h were found to be associated with RNA polymerase I (Pol I) and ribosomal RNA genes (rDNA). RNA interference-mediated knockdown of NM1 and WSTF reduced pre-rRNA synthesis in vivo, and antibodies to WSTF inhibited Pol I transcription on pre-assembled chromatin templates but not on naked DNA. The results indicate that NM1 cooperates with WICH to facilitate transcription on chromatin.


Subject(s)
Adenosine Triphosphatases/metabolism , Chromatin Assembly and Disassembly/genetics , Chromosomal Proteins, Non-Histone/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Myosin Type I/metabolism , Nuclear Proteins/metabolism , RNA Polymerase I/genetics , Transcription Factors/metabolism , Transcription, Genetic , Adenosine Triphosphatases/chemistry , Adenosine Triphosphatases/genetics , Cell Nucleus/chemistry , Cell Nucleus/genetics , Cell Nucleus/metabolism , Chromosomal Proteins, Non-Histone/chemistry , Chromosomal Proteins, Non-Histone/genetics , HeLa Cells , Humans , Intracellular Signaling Peptides and Proteins/genetics , Intracellular Signaling Peptides and Proteins/physiology , Myosin Type I/chemistry , Myosin Type I/genetics , Nuclear Proteins/genetics , Nuclear Proteins/physiology , Protein Binding/genetics , RNA Polymerase I/biosynthesis , RNA Polymerase I/chemistry , Transcription Factors/chemistry , Transcription Factors/genetics
8.
FEBS J ; 273(5): 926-35, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16478467

ABSTRACT

Mature lung surfactant protein C (SP-C) corresponds to residues 24-58 of the 21 kDa proSP-C. A late processing intermediate, SP-Ci, corresponding to residues 12-58 of proSP-C, lacks the surface activity of SP-C, and the SP-Ci alpha-helical structure does not unfold in contrast to the metastable nature of the SP-C helix. The NMR structure of an analogue of SP-Ci, SP-Ci(1-31), with two palmitoylCys replaced by Phe and four Val replaced by Leu, in dodecylphosphocholine micelles and in ethanol shows that its alpha-helix vs. that of SP-C is extended N-terminally. The Arg-Phe part in SP-Ci that is cleaved to generate SP-C is localized in a turn structure, which is followed by a short segment in extended conformation. Circular dichroism spectroscopy of SP-Ci(1-31) in microsomal or surfactant lipids shows a mixture of helical and extended conformation at pH 6, and a shift to more unordered structure at pH 5. Replacement of the N-terminal hexapeptide segment SPPDYS (known to constitute a signal in intracellular targeting) of SP-Ci with AAAAAA results in a peptide that is mainly unstructured, independent of pH, in microsomal and surfactant lipids. Addition of a synthetic dodecapeptide, corresponding to the propeptide part of SP-Ci, to mature SP-C results in slower aggregation kinetics and altered amyloid fibril formation, and reduces the surface activity of phospholipid-bound SP-C. These data suggest that the propeptide part of SP-Ci prevents unfolding by locking the N-terminal part of the helix, and that acidic pH results in structural disordering of the region that is proteolytically cleaved to generate SP-C.


Subject(s)
Pulmonary Surfactant-Associated Protein C/chemistry , Animals , Circular Dichroism , Drug Stability , Humans , Hydrogen-Ion Concentration , In Vitro Techniques , Micelles , Microscopy, Electron , Models, Molecular , Nuclear Magnetic Resonance, Biomolecular , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Peptide Fragments/ultrastructure , Protein Conformation , Protein Precursors/chemistry , Protein Precursors/metabolism , Protein Precursors/ultrastructure , Pulmonary Surfactant-Associated Protein C/metabolism , Pulmonary Surfactant-Associated Protein C/ultrastructure , Rabbits , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Swine
9.
Exp Brain Res ; 168(1-2): 11-24, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16175362

ABSTRACT

Pronounced neurodegeneration of hippocampal pyramidal neurons has been shown in Alzheimer's disease. The aim of this study was to establish an organotypic in vitro model for investigating effects of the amyloid beta (Abeta)-peptide on pyramidal neuron degeneration, glial cell activation and tau phosphorylation. Tissue cultures in a quasi-monolayer were obtained using roller-drum incubation of hippocampal slices from neonatal Sprague Dawley rats. Neuronal populations identified included N-methyl-D-aspartate (NMDA-R1) receptor immunoreactive pyramidal neurons, and neurons immunopositive for glutamic acid decarboxylase-65 (GAD65) or gamma amino butyric acid (GABA). Many neurons expressed phosphorylated tau as shown by pS(396), AD2 and PHF-tau immunostaining. Astrocytes, microglial cells and macrophages were also identified. The Abeta(25-35) peptide formed fibrillar networks within 2 days as demonstrated by electron microscopy. In the presence of the neurotoxic Abeta(25-35) peptide, but not Abeta(35-25), deposits developed in the tissue that were stainable with Thioflavine T and Congo red and showed the characteristic birefringence of Abeta plaques. Following Abeta(25-35) exposure, neurodegenerative cells were observed with Fluoro-Jade B staining. Further characterization of pyramidal neurons immunopositive for NMDA-R1 showed a decrease of cell number in the immediate surrounding of Abeta(25-35) deposits in a time- and concentration-dependent fashion. Similar effects on pyramidal neurons were obtained following exposure to the full-length, Abeta(1-40) peptide. Also, a loss of neuronal processes was seen with GAD65, but not GABA, immunohistochemistry after exposure to Abeta(25-35). Abeta(25-35)-exposed neurons immunopositive for phospho-tau showed degenerating, bent and often fragmented processes. Astrocytes showed increased GFAP-positive reactivity after Abeta(25-35) exposure and formation of large networks of processes. No obvious effect on microglial cells and macrophages could be seen after the Abeta(25-35) exposure. The developed in vitro system may constitute a useful tool for screening novel drugs against Abeta-induced alterations of tau and degeneration of hippocampal neurons.


Subject(s)
Amyloid beta-Peptides/toxicity , Hippocampus/pathology , Organ Culture Techniques/methods , Pyramidal Cells/drug effects , Analysis of Variance , Animals , Animals, Newborn , CD11b Antigen/metabolism , Cell Count/methods , Dose-Response Relationship, Drug , Ectodysplasins , Fluoresceins , Glial Fibrillary Acidic Protein/metabolism , Glutamate Decarboxylase/metabolism , Immunohistochemistry/methods , Isoenzymes/metabolism , Membrane Proteins/metabolism , Microscopy, Electron, Transmission/methods , Organic Chemicals/metabolism , Peptide Fragments/toxicity , Plaque, Amyloid/pathology , Plaque, Amyloid/ultrastructure , Polymers/metabolism , Pyramidal Cells/pathology , Pyramidal Cells/ultrastructure , Rats , Rats, Sprague-Dawley , Receptors, N-Methyl-D-Aspartate/metabolism , Time Factors , Tumor Necrosis Factors/metabolism , gamma-Aminobutyric Acid/metabolism , tau Proteins/metabolism
10.
FEBS J ; 272(9): 2231-6, 2005 May.
Article in English | MEDLINE | ID: mdl-15853808

ABSTRACT

Recently, a novel plaque-associated protein, collagenous Alzheimer amyloid plaque component (CLAC), was identified in brains from patients with Alzheimer's disease. CLAC is derived from a type II transmembrane collagen precursor protein, termed CLAC-P (collagen XXV). The biological function and the contribution of CLAC to the pathogenesis of Alzheimer's disease and plaque formation are unknown. In vitro studies indicate that CLAC binds to fibrillar, but not to monomeric, amyloid beta-peptide (Abeta). Here, we examined the effects of CLAC on Abeta fibrils using assays based on turbidity, thioflavin T binding, sedimentation analysis, and electron microscopy. The incubation of CLAC with preformed Abeta fibrils led to increased turbidity, indicating that larger aggregates were formed. In support of this contention, more Abeta was sedimented in the presence of CLAC, as determined by gel electrophoresis. Moreover, electron microscopy revealed an increased amount of Abeta fibril bundles in samples incubated with CLAC. Importantly, the frequently used thioflavin T-binding assay failed to reveal these effects of CLAC. Digestion with proteinase K or trypsin showed that Abeta fibrils, incubated together with CLAC, were more resistant to proteolytic degradation. Therefore, CLAC assembles Abeta fibrils into fibril bundles that have an increased resistance to proteases. We suggest that CLAC may act in a similar way in vivo.


Subject(s)
Alzheimer Disease/metabolism , Amyloid beta-Peptides/metabolism , Nerve Tissue Proteins/metabolism , Non-Fibrillar Collagens/metabolism , Peptide Fragments/metabolism , Alzheimer Disease/pathology , Amyloid beta-Peptides/chemistry , Amyloid beta-Peptides/ultrastructure , Benzothiazoles , Fluorescent Dyes/metabolism , Humans , Non-Fibrillar Collagens/chemistry , Peptide Fragments/chemistry , Peptide Fragments/ultrastructure , Thiazoles/metabolism
11.
Cardiovasc Res ; 65(2): 535-45, 2005 Feb 01.
Article in English | MEDLINE | ID: mdl-15639493

ABSTRACT

OBJECTIVE: Smooth muscle cells (SMCs) involved in intimal hyperplasia during transplant vasculopathy are derived both from the graft and the host. Here, the role of an allogenic immune response in the accumulation of host-derived SMCs in the neointima was explored. METHODS: Infrarenal aorta was transplanted from female F344 to male Lewis rats with or without immunosuppression by cyclosporine A (CsA). Accumulation of host-derived SMCs and inflammatory cells in the grafts, SMC proliferation, and apoptosis were analyzed by immunohistochemistry and real-time polymerase chain reaction (PCR) for the SRY gene. Finally, SMCs were seeded in an allogenic or isogenic manner after balloon injury to carotid arteries and SMC survival was estimated. RESULTS: Proliferating graft SMCs and infiltrating leukocytes were observed in the intima early after transplantation. In parallel, inflammatory cells and immunoglobulins infiltrated the media and apoptosis of medial SMCs occurred, leading to destruction of this layer. CsA decreased the number of SRY+ SMCs in the lesions, restricted medial destruction, and improved survival of allogenic SMCs after seeding in injured arteries. CONCLUSIONS: Development of intimal thickenings during transplant vasculopathy involves an allogenic immune response, which promotes accumulation of host-derived SMCs and apoptosis of resident graft SMCs.


Subject(s)
Aorta/transplantation , Arteriosclerosis/pathology , Muscle, Smooth/pathology , Tunica Intima/pathology , Animals , Aorta/immunology , Apoptosis , Arteriosclerosis/immunology , Female , Host vs Graft Reaction , Immunohistochemistry/methods , In Situ Nick-End Labeling , Male , Muscle, Smooth/immunology , Neovascularization, Pathologic , Rats , Rats, Inbred F344 , Rats, Inbred Lew , Transplantation, Homologous , Transplantation, Isogeneic , Tunica Intima/immunology
12.
J Biol Chem ; 279(49): 51654-60, 2004 Dec 03.
Article in English | MEDLINE | ID: mdl-15456764

ABSTRACT

Mitochondria are central in the regulation of cell death. Apart from providing the cell with ATP, mitochondria also harbor several death factors that are released upon apoptotic stimuli. Alterations in mitochondrial functions, increased oxidative stress, and neurons dying by apoptosis have been detected in Alzheimer's disease patients. These findings suggest that mitochondria may trigger the abnormal onset of neuronal cell death in Alzheimer's disease. We previously reported that presenilin 1 (PS1), which is often mutated in familial forms of Alzheimer's disease, is located in mitochondria and hypothesized that presenilin mutations may sensitize cells to apoptotic stimuli at the mitochondrial level. Presenilin forms an active gamma-secretase complex together with Nicastrin (NCT), APH-1, and PEN-2, which among other substrates cleaves the beta-amyloid precursor protein (beta-APP) generating the amyloid beta-peptide and the beta-APP intracellular domain. Here we have identified dual targeting sequences (for endoplasmic reticulum and mitochondria) in NCT and showed expression of NCT in mitochondria by immunoelectron microscopy. We also showed that NCT together with APH-1, PEN-2, and PS1 form a high molecular weight complex located in mitochondria. gamma-secretase activity in isolated mitochondria was demonstrated using C83 (alpha-secretase-cleaved C-terminal 83-residue beta-APP fragment from BD8 cells lacking presenilin and thus gamma-secretase activity) or recombinant C100-Flag (C-terminal 100-residue beta-APP fragment) as substrates. Both systems generated an APP intracellular domain, and the activity was inhibited by the gamma-secretase inhibitors l-685,458 or Compound E. This novel localization of NCT, PS1, APH-1, and PEN-2 expands the role and importance of gamma-secretase activity to mitochondria.


Subject(s)
Membrane Glycoproteins/biosynthesis , Membrane Proteins/biosynthesis , Adenosine Triphosphate/chemistry , Alzheimer Disease/metabolism , Amino Acid Sequence , Amyloid Precursor Protein Secretases , Amyloid beta-Peptides/chemistry , Amyloid beta-Protein Precursor/chemistry , Animals , Apoptosis , Aspartic Acid Endopeptidases , Brain/metabolism , Cholic Acids/pharmacology , Detergents/pharmacology , Electrophoresis, Polyacrylamide Gel , Endopeptidases/metabolism , Endoplasmic Reticulum/metabolism , Golgi Apparatus/metabolism , Immunoblotting , Immunoprecipitation , Male , Microscopy, Immunoelectron , Mitochondria/metabolism , Molecular Sequence Data , Neurons/metabolism , Oxidative Stress , Peptide Hydrolases , Peptides/chemistry , Presenilin-1 , Protein Structure, Tertiary , Rats , Rats, Sprague-Dawley , Signal Transduction , Subcellular Fractions/metabolism
13.
Mol Biol Cell ; 15(9): 4261-77, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15229283

ABSTRACT

The vertebrate nuclear pore complex (NPC) is a macromolecular assembly of protein subcomplexes forming a structure of eightfold radial symmetry. The NPC core consists of globular subunits sandwiched between two coaxial ring-like structures of which the ring facing the nuclear interior is capped by a fibrous structure called the nuclear basket. By postembedding immunoelectron microscopy, we have mapped the positions of several human NPC proteins relative to the NPC core and its associated basket, including Nup93, Nup96, Nup98, Nup107, Nup153, Nup205, and the coiled coil-dominated 267-kDa protein Tpr. To further assess their contributions to NPC and basket architecture, the genes encoding Nup93, Nup96, Nup107, and Nup205 were posttranscriptionally silenced by RNA interference (RNAi) in HeLa cells, complementing recent RNAi experiments on Nup153 and Tpr. We show that Nup96 and Nup107 are core elements of the NPC proper that are essential for NPC assembly and docking of Nup153 and Tpr to the NPC. Nup93 and Nup205 are other NPC core elements that are important for long-term maintenance of NPCs but initially dispensable for the anchoring of Nup153 and Tpr. Immunogold-labeling for Nup98 also results in preferential labeling of NPC core regions, whereas Nup153 is shown to bind via its amino-terminal domain to the nuclear coaxial ring linking the NPC core structures and Tpr. The position of Tpr in turn is shown to coincide with that of the nuclear basket, with different Tpr protein domains corresponding to distinct basket segments. We propose a model in which Tpr constitutes the central architectural element that forms the scaffold of the nuclear basket.


Subject(s)
Nuclear Pore Complex Proteins/metabolism , Nuclear Pore/metabolism , Proto-Oncogene Proteins/metabolism , HeLa Cells , Humans , Microscopy, Immunoelectron , Models, Biological , Multiprotein Complexes , Nuclear Pore/ultrastructure , Nuclear Pore Complex Proteins/genetics , Nuclear Pore Complex Proteins/ultrastructure , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Nuclear Proteins/ultrastructure , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins/ultrastructure , RNA Interference
14.
J Mol Biol ; 338(5): 857-62, 2004 May 14.
Article in English | MEDLINE | ID: mdl-15111052

ABSTRACT

The lung surfactant-associated protein C (SP-C) consists mainly of a polyvaline alpha-helix, which is stable in a lipid membrane. However, in agreement with the predicted beta-strand conformation of a polyvaline segment, helical SP-C unfolds and transforms into beta-sheet aggregates and amyloid fibrils within a few days in aqueous organic solvents. SP-C fibril formation and aggregation have been associated with lung disease. Here, we show that in a recently isolated biosynthetic precursor of SP-C (SP-Ci), a 12 residue N-terminal propeptide locks the metastable polyvaline part in a helical conformation. The SP-Ci helix does not aggregate or unfold during several weeks of incubation, as judged by hydrogen/deuterium exchange and mass spectrometry. Hydrogen/deuterium exchange experiments further indicate that the propeptide reduces exchange in parts corresponding to mature SP-C. Finally, in an acidic environment, SP-Ci unfolds and aggregates into amyloid fibrils like SP-C. These data suggest a direct role of the N-terminal propeptide in SP-C biosynthesis.


Subject(s)
Protein Precursors/metabolism , Pulmonary Surfactant-Associated Proteins/metabolism , Circular Dichroism , Deuterium Exchange Measurement , Protein Precursors/chemistry , Protein Structure, Secondary , Pulmonary Surfactant-Associated Proteins/chemistry
15.
Biochemistry ; 43(16): 4655-61, 2004 Apr 27.
Article in English | MEDLINE | ID: mdl-15096033

ABSTRACT

The tetrapeptide KFFE is one of the shortest amyloid fibril-forming peptides described. Herein, we have investigated how the structural environment of this motif affects polymerization. Using a turn motif (YNGK) or a less rigid sequence (AAAK) to fuse two KFFE tetrapeptides, we show by several biophysical methods that the amyloidogenic properties are strongly dependent on the structural environment. The dodecapeptide KFFEAAAKKFFE forms abundant thick fibril bundles. Freshly dissolved KFFEAAAKKFFE is monomeric and shows mainly disordered secondary structure, as evidenced by circular dichroism, NMR spectroscopy, hydrogen/deuterium exchange measurements, and molecular modeling studies. In sharp contrast, the dodecapeptide KFFEYNGKKFFE does not form fibrils but folds into a stable beta-hairpin. This structure can oligomerize into a stable 12-mer and multiples thereof, as shown by size exclusion chromatography, sedimentation analysis, and electrospray mass spectrometry. These data indicate that the structural context in which a potential fibril forming sequence is present can prevent fibril formation by favoring self-limiting oligomerization over polymerization.


Subject(s)
Amyloid beta-Peptides/chemistry , Amyloid/antagonists & inhibitors , Amyloid/metabolism , Protein Folding , Amino Acid Motifs , Amyloid/chemistry , Amyloid/ultrastructure , Amyloid beta-Peptides/metabolism , Amyloid beta-Peptides/ultrastructure , Circular Dichroism , Deuterium Exchange Measurement , Models, Molecular , Nuclear Magnetic Resonance, Biomolecular , Oligopeptides/chemistry , Oligopeptides/metabolism , Polymers/chemistry , Polymers/metabolism , Protein Structure, Quaternary , Protein Structure, Secondary
16.
Protein Sci ; 13(5): 1251-9, 2004 May.
Article in English | MEDLINE | ID: mdl-15096631

ABSTRACT

Several proteins and peptides that can convert from alpha-helical to beta-sheet conformation and form amyloid fibrils, including the amyloid beta-peptide (Abeta) and the prion protein, contain a discordant alpha-helix that is composed of residues that strongly favor beta-strand formation. In their native states, 37 of 38 discordant helices are now found to interact with other protein segments or with lipid membranes, but Abeta apparently lacks such interactions. The helical propensity of the Abeta discordant region (K16LVFFAED23) is increased by introducing V18A/F19A/F20A replacements, and this is associated with reduced fibril formation. Addition of the tripeptide KAD or phospho-L-serine likewise increases the alpha-helical content of Abeta(12-28) and reduces aggregation and fibril formation of Abeta(1-40), Abeta(12-28), Abeta(12-24), and Abeta(14-23). In contrast, tripeptides with all-neutral, all-acidic or all-basic side chains, as well as phosphoethanolamine, phosphocholine, and phosphoglycerol have no significant effects on Abeta secondary structure or fibril formation. These data suggest that in free Abeta, the discordant alpha-helix lacks stabilizing interactions (likely as a consequence of proteolytic removal from a membrane-associated precursor protein) and that stabilization of this helix can reduce fibril formation.


Subject(s)
Amyloid beta-Peptides/chemistry , Amino Acid Sequence , Amino Acid Substitution , Amyloid beta-Peptides/metabolism , Amyloid beta-Peptides/ultrastructure , Molecular Sequence Data , Oligopeptides/chemistry , Organophosphorus Compounds/chemistry , Protein Structure, Secondary
17.
Int Immunol ; 16(2): 353-64, 2004 Feb.
Article in English | MEDLINE | ID: mdl-14734621

ABSTRACT

Interactive contact between B lymphocytes and T cells is necessary for their expansion during an immune response. It has been shown that B lymphocytes receive signals from T cells, such as IL-4 and cross-linking of CD40, which are crucial for their differentiation. We previously found that these factors induce formation of microvilli on B cells and that this was correlated with increased homotypic adhesion of B lymphocytes. In this study we have investigated if IL-4 induce segregation of proteins to microvilli and lipid rafts. Using immuno-electron microscopy we analyzed cell-surface distribution of molecules involved in B-T cell co-activation. Recruitment to detergent-resistant membrane fractions was analyzed using sucrose gradient centrifugation. We found that microvilli were enriched in ICAM-1 and MHC class II molecules. In contrast, LFA-1 and CD40 were more abundant on the smooth cell surfaces, while B7-2 (CD86) was randomly distributed. We also discovered that depletion of cholesterol, using beta-methyl-cyclodextrin, lowered the number of microvilli, indicating that intact lipid rafts are required for their expression. Moreover, activation of B lymphocytes by lipopolysaccharide (LPS) induced increased expression of GM(1), a marker for lipid rafts. However, although both surface and total levels of GM(1) were similar in B lymphocytes stimulated with either LPS or LPS plus IL-4, GM(1) was mainly expressed on microvilli in LPS plus IL-4-stimulated cells. Taken together, our results indicate that microvilli represent distinct inducible membrane domains that can regulate direct cell-cell interactions via grouping and three-dimensional presentation of cell-surface receptors.


Subject(s)
B-Lymphocytes/ultrastructure , Genes, MHC Class II/physiology , Intercellular Adhesion Molecule-1/metabolism , Membrane Microdomains/ultrastructure , Microvilli/ultrastructure , Animals , Antigens, CD/metabolism , B-Lymphocytes/immunology , B7-2 Antigen , CD40 Antigens/metabolism , Cell Communication/drug effects , Cell Communication/physiology , Cholera Toxin/pharmacology , Cyclodextrins/pharmacology , Interleukin-4/pharmacology , Lipopolysaccharides/pharmacology , Lymphocyte Activation/drug effects , Lymphocyte Function-Associated Antigen-1/metabolism , Membrane Glycoproteins/metabolism , Membrane Microdomains/metabolism , Mice , Microvilli/immunology , T-Lymphocytes/immunology
18.
Circ Res ; 94(4): 550-8, 2004 Mar 05.
Article in English | MEDLINE | ID: mdl-14739157

ABSTRACT

Smooth muscle cell (SMC) proliferation is a critical process in vascular disease. Heparan sulfate (HS) proteoglycans inhibit SMC growth, but the role of endogenous counterparts in the vessel wall in control of SMC function is not known in detail. Perlecan is the major HS proteoglycans in SMC basement membranes and in vessel wall extracellular matrix (ECM). In this study, transgenic mice with HS-deficient perlecan were analyzed with respect to vascular phenotype and intimal lesion formation. Furthermore, SMC cultures were established and characterized with respect to morphology, immunocytochemical features, proteoglycan synthesis, proliferative capacity, and ECM binding of basic fibroblast growth factor (FGF-2). In vitro, mutant SMCs formed basement membranes with perlecan core protein, but with decreased levels of HS, they showed diminished secretion of HS-containing perlecan into the medium and a defective ECM-binding capacity of FGF-2. In vitro, mutant SMCs showed increased proliferation compared with wild-type cells, and in vivo, enhanced SMC proliferation and intimal hyperplasia were observed after flow cessation of the carotid artery in mutant mice. The results indicate that the endogenous HS side-chains of perlecan contribute to SMC growth control both in vitro and during intimal hyperplasia, possibly by sequestering heparin-binding mitogens such as FGF-2.


Subject(s)
Heparan Sulfate Proteoglycans/physiology , Heparitin Sulfate/physiology , Muscle, Smooth, Vascular/pathology , Tunica Intima/pathology , Animals , Cell Division , Cells, Cultured , Crosses, Genetic , Exons/genetics , Fibroblast Growth Factor 2/metabolism , Heparan Sulfate Proteoglycans/chemistry , Heparan Sulfate Proteoglycans/genetics , Heparitin Sulfate/chemistry , Hyperplasia , Mice , Mice, Inbred C57BL , Mice, Transgenic , Protein Binding , Sequence Deletion
19.
Circ Res ; 94(5): 664-70, 2004 Mar 19.
Article in English | MEDLINE | ID: mdl-14739162

ABSTRACT

Several endothelial growth factors induce both blood and lymphatic angiogenesis. However, a systematic comparative study of the impact of these factors on vascular morphology and function has been lacking. In this study, we report a quantitative analysis of the structure and macromolecular permeability of FGF-2-, VEGF-A-, and VEGF-C-induced blood and lymphatic vessels. Our results show that VEGF-A stimulated formation of disorganized, nascent vasculatures as a result of fusion of blood capillaries into premature plexuses with only a few lymphatic vessels. Ultrastructural analysis revealed that VEGF-A-induced blood vessels contained high numbers of endothelial fenestrations that mediated high permeability to ferritin, whereas the FGF-2-induced blood vessels lacked vascular fenestrations and showed only little leakage of ferritin. VEGF-C induced approximately equal amounts of blood and lymphatic capillaries with endothelial fenestrations present only on blood capillaries, mediating a medium level of ferritin leakage into the perivascular space. No endothelial fenestrations were found in FGF-2-, VEGF-A-, or VEGF-C-induced lymphatic vessels. These findings highlight the structural and functional differences between blood and lymphatic vessels induced by FGF-2, VEGF-A, and VEGF-C. Such information is important to consider in development of novel therapeutic strategies using these angiogenic factors.


Subject(s)
Capillaries/ultrastructure , Capillary Permeability/drug effects , Corneal Neovascularization , Endothelium, Vascular/ultrastructure , Fibroblast Growth Factor 2/pharmacology , Lymphangiogenesis/drug effects , Vascular Endothelial Growth Factor A/pharmacology , Vascular Endothelial Growth Factor C/pharmacology , Animals , Capillaries/drug effects , Caveolae/physiology , Drug Implants , Ferritins/pharmacokinetics , Humans , Image Processing, Computer-Assisted , Male , Mice , Mice, Inbred C57BL , Recombinant Fusion Proteins/pharmacology
20.
J Vasc Surg ; 38(6): 1283-92, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14681629

ABSTRACT

INTRODUCTION: It has been suggested that the intraluminal thrombus of abdominal aortic aneurysm (AAA) affects the underlying vessel wall. Aneurysm enlargement has been associated with growth of thrombus, and rupture has been proposed to occur after bleeding into the thrombus. To examine how thrombus affects the vessel wall, we compared the morphology of aneurysm wall covered with thrombus with wall segments exposed to flowing blood. Material and methods Sixteen patients (14 men, 2 women; age range, 56-79 years) undergoing elective repair of AAA, where computed tomography scans showed thrombus and segments of the aneurysm wall exposed to flowing blood, were included in the study. Specimens from the aneurysm were taken for light and electron microscopy. Masson trichrome staining was performed for wall thickness determination and demonstration of collagen, and Weigert-van Gieson staining for elastin. The cellular composition was analyzed by immunohistochemistry with antibodies against CD3 for T cells, CD4 for T helper cells, CD8 for T cytotoxic cells, CD20 for B cells, CD68 for macrophages, and smooth muscle alpha-actin for smooth muscle cells (SMCs). Caspase-3 staining and TUNEL analysis were performed to evaluate apoptosis. RESULTS: The aneurysm wall covered with thrombus was thinner and contained fewer elastin fibers, and the few that were found were often fragmented. This part of the wall also contained fewer SMCs and more apoptotic nuclei than the wall exposed to flowing blood. Clusters of inflammatory cells were detected in the media of the aneurysm wall and in higher numbers in the parts covered with thrombus. Electron microscopy showed that the aneurysm wall without thrombus contained a dense collagenous matrix with differentiated SMCs. In the segment covered with thrombus, SMCs were more dedifferentiated (synthetic) and apoptotic or necrotic. There were also an increased number of inflammatory cells located in close contact with SMCs in various stages of apoptosis. CONCLUSION: The aneurysm wall covered with thrombus is thinner and shows more frequent signs of inflammation, apoptosis of SMCs, and degraded extracellular matrix. These findings suggest that thrombus formation and accumulation of inflammatory cells may perturb the structural integrity and stability of the vessel wall and thereby increase the risk for aneurysm rupture.


Subject(s)
Aortic Aneurysm, Abdominal/pathology , Thrombosis/pathology , Aged , Aortic Aneurysm, Abdominal/complications , Aortic Rupture/etiology , Apoptosis/physiology , Endothelium, Vascular/pathology , Endothelium, Vascular/ultrastructure , Female , Humans , Male , Middle Aged , Muscle, Smooth, Vascular/pathology , Muscle, Smooth, Vascular/ultrastructure , Necrosis , Regional Blood Flow/physiology , Risk Factors , Thrombosis/complications , Thrombosis/metabolism
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