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1.
Phys Rev Lett ; 123(8): 080402, 2019 Aug 23.
Article in English | MEDLINE | ID: mdl-31491197

ABSTRACT

Spontaneous wave-function collapse models, like continuous spontaneous localization, are designed to suppress macroscopic superpositions while preserving microscopic quantum phenomena. An observable consequence of collapse models is spontaneous heating of massive objects. We calculate the collapse-induced heating rate of astrophysical objects, and the corresponding equilibrium temperature. We apply these results to neutron stars, the densest phase of baryonic matter in the Universe. Stronger collapse model parameters imply greater heating, allowing us to derive competitive bounds on model parameters using neutron star observational data, and to propose speculative bounds based on the capabilities of current and future astronomical surveys.

2.
Article in English | MEDLINE | ID: mdl-23944487

ABSTRACT

Inspired by RecA-protein-based homology recognition, we consider the pairing of two long linear arrays of binding sites. We propose a fully reversible, physically realizable biased random walk model for rapid and accurate self-assembly due to the spontaneous pairing of matching binding sites, where the statistics of the searched sample are included. In the model, there are two bound conformations, and the free energy for each conformation is a weakly nonlinear function of the number of contiguous matched bound sites.


Subject(s)
Models, Molecular , Rec A Recombinases/chemistry , Rec A Recombinases/metabolism , Sequence Homology, Amino Acid , Binding Sites , DNA/metabolism , Diffusion , Protein Binding , Stochastic Processes , Thermodynamics , Time Factors
3.
Article in English | MEDLINE | ID: mdl-27499708

ABSTRACT

It is well known that during homology recognition and strand exchange the double stranded DNA (dsDNA) in DNA/RecA filaments is highly extended, but the functional role of the extension has been unclear. We present an analytical model that calculates the distribution of tension in the extended dsDNA during strand exchange. The model suggests that the binding of additional dsDNA base pairs to the DNA/RecA filament alters the tension in dsDNA that was already bound to the filament, resulting in a non-linear increase in the mechanical energy as a function of the number of bound base pairs. This collective mechanical response may promote homology stringency and underlie unexplained experimental results.

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