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1.
Cancers (Basel) ; 16(12)2024 Jun 08.
Article in English | MEDLINE | ID: mdl-38927885

ABSTRACT

Pancreatic cancer is a prevalent lethal gastrointestinal cancer that generally does not show any symptoms until it reaches advanced stages, resulting in a high mortality rate. People at high risk, such as those with a family history or chronic pancreatitis, do not have a universally accepted screening protocol. Chemotherapy and radiotherapy demonstrate limited effectiveness in the management of pancreatic cancer, emphasizing the urgent need for innovative therapeutic strategies. Recent studies indicated that the complex interaction among pancreatic cancer cells within the dynamic microenvironment, comprising the extracellular matrix, cancer-associated cells, and diverse immune cells, intricately regulates the biological characteristics of the disease. Additionally, mounting evidence suggests that EVs play a crucial role as mediators in intercellular communication by the transportation of different biomolecules, such as miRNA, proteins, DNA, mRNA, and lipids, between heterogeneous cell subpopulations. This communication mediated by EVs significantly impacts multiple aspects of pancreatic cancer pathogenesis, including proliferation, angiogenesis, metastasis, and resistance to therapy. In this review, we delve into the pivotal role of EV-associated miRNAs in the progression, metastasis, and development of drug resistance in pancreatic cancer as well as their therapeutic potential as biomarkers and drug-delivery mechanisms for the management of pancreatic cancer.

2.
Front Cell Infect Microbiol ; 14: 1391288, 2024.
Article in English | MEDLINE | ID: mdl-38919703

ABSTRACT

The coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus, is a highly contagious respiratory disease with widespread societal impact. The symptoms range from cough, fever, and pneumonia to complications affecting various organs, including the heart, kidneys, and nervous system. Despite various ongoing efforts, no effective drug has been developed to stop the spread of the virus. Although various types of medications used to treat bacterial and viral diseases have previously been employed to treat COVID-19 patients, their side effects have also been observed. The way SARS-CoV-2 infects the human body is very specific, as its spike protein plays an important role. The S subunit of virus spike protein cleaved by human proteases, such as furin protein, is an initial and important step for its internalization into a human host. Keeping this context, we attempted to inhibit the furin using phytochemicals that could produce minimal side effects. For this, we screened 408 natural phytochemicals from various plants having antiviral properties, against furin protein, and molecular docking and dynamics simulations were performed. Based on the binding score, the top three compounds (robustaflavone, withanolide, and amentoflavone) were selected for further validation. MM/GBSA energy calculations revealed that withanolide has the lowest binding energy of -57.2 kcal/mol followed by robustaflavone and amentoflavone with a binding energy of -45.2 kcal/mol and -39.68 kcal/mol, respectively. Additionally, ADME analysis showed drug-like properties for these three lead compounds. Hence, these natural compounds robustaflavone, withanolide, and amentoflavone, may have therapeutic potential for the management of SARS-CoV-2 by targeting furin.


Subject(s)
Antiviral Agents , COVID-19 Drug Treatment , Furin , Molecular Docking Simulation , Phytochemicals , SARS-CoV-2 , Furin/antagonists & inhibitors , Furin/metabolism , Phytochemicals/pharmacology , Phytochemicals/chemistry , Humans , SARS-CoV-2/drug effects , SARS-CoV-2/enzymology , Antiviral Agents/pharmacology , Antiviral Agents/chemistry , Protease Inhibitors/pharmacology , Protease Inhibitors/chemistry , Spike Glycoprotein, Coronavirus/metabolism , Spike Glycoprotein, Coronavirus/antagonists & inhibitors , Spike Glycoprotein, Coronavirus/chemistry , COVID-19/virology , Protein Binding
3.
J Biomol Struct Dyn ; 42(2): 948-959, 2024.
Article in English | MEDLINE | ID: mdl-37139795

ABSTRACT

The majority of the world population (around 25%) has latent Mycobacterium tuberculosis (Mtb) infection, among which only 5-10% of individuals develop active tuberculosis (TB), and 90-95% continue to have latent tuberculosis infection. This makes it the biggest global health concern. It has been reported that the resuscitation-promoting factor B (RpfB) is an exciting potential target for tuberculosis drug discovery due to its significant role in the reactivation of latent TB infection to an active infection. Several attempts have been made to investigate potential inhibitors against RpfB utilizing in-silico approaches. The present study also utilized a computational approach to investigate microbially derived natural compounds against the Mtb RpfB protein which is a very cost-effective This evaluation used structure-based virtual screening (SBVS), drug-likeness profiling, molecular docking, molecular dynamics simulation, and free-binding energy calculations. Six potential natural compounds, viz. Cyclizidine I, Boremexin C, Xenocoumacin 2, PM-94128, Cutinostatin B, and (+)1-O-demethylvariecolorquinone A were selected, which displayed a potential binding affinity between -52.39 and -60.87 Kcal/mol MMGBSA score and docking energy between -7.307 Kcal/mol to -6.972 Kcal/mol. All the complexes showed acceptable stability (<2.7 Å RMSD) during 100 ns MD simulation time except the RpfB protein-xenocoumacin 2 complex. This result exhibited that the selected compounds have high efficiency in inhibiting the Mtb RpfB and can be taken into account for additional in vitro and in vivo experimental validation.Communicated by Ramaswamy H. Sarma.


Subject(s)
Mycobacterium tuberculosis , Tuberculosis , Humans , Mycobacterium tuberculosis/metabolism , Complement Factor B/metabolism , Molecular Docking Simulation , Bacterial Proteins/chemistry , Molecular Dynamics Simulation
4.
Front Mol Biosci ; 10: 1214489, 2023.
Article in English | MEDLINE | ID: mdl-37469704

ABSTRACT

Clustered regularly interspaced short palindromic repeats (CRISPR) is a third-generation genome editing method that has revolutionized the world with its high throughput results. It has been used in the treatment of various biological diseases and infections. Various bacteria and other prokaryotes such as archaea also have CRISPR/Cas9 systems to guard themselves against bacteriophage. Reportedly, CRISPR/Cas9-based strategy may inhibit the growth and development of triple-negative breast cancer (TNBC) via targeting the potentially altered resistance genes, transcription, and epigenetic regulation. These therapeutic activities could help with the complex issues such as drug resistance which is observed even in TNBC. Currently, various methods have been utilized for the delivery of CRISPR/Cas9 into the targeted cell such as physical (microinjection, electroporation, and hydrodynamic mode), viral (adeno-associated virus and lentivirus), and non-viral (liposomes and lipid nano-particles). Although different models have been developed to investigate the molecular causes of TNBC, but the lack of sensitive and targeted delivery methods for in-vivo genome editing tools limits their clinical application. Therefore, based on the available evidences, this review comprehensively highlighted the advancement, challenges limitations, and prospects of CRISPR/Cas9 for the treatment of TNBC. We also underscored how integrating artificial intelligence and machine learning could improve CRISPR/Cas9 strategies in TNBC therapy.

5.
Curr Drug Targets ; 24(1): 89-102, 2023.
Article in English | MEDLINE | ID: mdl-36111764

ABSTRACT

BACKGROUND: Flavonoids belong to the chemical class of polyphenols and are in the category of secondary metabolites imparting a wide protective effect against acute and chronic diseases. OBJECTIVE: The study aims to investigate and summarize the information of various flavonoids extracted, isolated from various sources, and possess different pharmacological properties by acting on multiple targets. METHODS: This comprehensive review summarizes the research information related to flavonoids and their pharmacological action targets from various sources like PubMed, Google Scholar and Google websites. RESULTS: Extracted information in the paper discusses various therapeutic effects of flavonoids isolated from medicinal plant sources, which have the property to inhibit several enzymes, which finally results in health benefits like anti-cancer, anti-bacterial, antioxidant, anti-allergic, and anti-viral effects. This study also showed the different solvents and methods involved in the extraction and characterization of the isolated phytochemical constituents. CONCLUSION: The findings showed the contribution of several flavonoids in the management and inhibition of various acute and chronic sicknesses by acting on different sites in the body. This study may lead to gaining interest for more research on the bioactives of different medicinal plants for the discovery of new lead compounds or further improvement of the efficacy of the existing compound.


Subject(s)
Phytotherapy , Plants, Medicinal , Humans , Phytotherapy/methods , Flavonoids/pharmacology , Flavonoids/therapeutic use , Plants, Medicinal/chemistry , Plant Extracts/pharmacology , Polyphenols/pharmacology , Polyphenols/therapeutic use , Phytochemicals/pharmacology , Phytochemicals/therapeutic use
7.
ISA Trans ; 103: 366-389, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32220531

ABSTRACT

The Performance of rolling element bearings has a significant influence on reliability and safety in the various engineering fields. While heading toward the condition evaluation of rolling element bearings, the higher dimensionality of feature space became a crucial concern. Thus, to have a check on the hurdles, this paper proposes a novel approach of bearing condition assessment utilizing Local mean decomposition (LMD) and spectral clustering (SC). Spectral Clustering (SC) is an influential tool, which heals the curse of dimensionality and facilitates the model by imparting a systematized structure. SC focuses more on connectivity rather than geometrical vicinity; moreover, the provision of a similarity matrix makes SC more reliable and increases its performance. To enrich the efficiency of SC, a novel decision criterion, PI (Parting Index) aiming the optimal number of clusters based on a new similarity indicator and disorder indicator coined as Synergic Association Index (SAI) and Separation Index (SI) respectively, has been proposed. The work aims to achieve better performance degradation assessment (PDA) by the application of the new SC-PI approach with the following steps; the first step is the decomposition of vibration signal into product functions (PFs) utilizing LMD; the second step involves the extraction of proper fault features; third, the extracted features are classified with the SC-PI method; finally the feature or attribute vectors are endowed to trained model and confidence value (CV) is calculated. The proposed method is validated on two datasets of different fault types. The results so obtained indicates that the SC-PI method easily differentiates the various stages when compared to different assessment techniques i.e. time-domain features, self-organizing map (SOM), k-medoids and Gaussian mixture model (GMM).

8.
J Pharm Bioallied Sci ; 10(4): 181-191, 2018.
Article in English | MEDLINE | ID: mdl-30568375

ABSTRACT

Moringa oleifera is a valued medicinal plant in traditional folk medicine. Many pharmacological studies have shown the ability of this plant to exhibit analgesic, anti-inflammatory, antipyretic, anticancer, antioxidant, nootropic, hepatoprotective, gastroprotective, anti-ulcer, cardiovascular, anti-obesity, antiepileptic, antiasthmatic, antidiabetic, anti-urolithiatic, diuretic, local anesthetic, anti-allergic, anthelmintic, wound healing, antimicrobial, immunomodulatory, and antidiarrheal properties. This review is a comprehensive summary of the phytochemical and pharmacological activities as well as the traditional and therapeutic uses of this plant. M. oleifera has wide traditional and pharmacological uses in various pathophysiological conditions. We will review the various properties of M. oleifera (drumstick tree) and focus on its various medicinal properties. We think that it is an attractive subject for further experimental and clinical investigations.

9.
Anticancer Drugs ; 24(4): 327-36, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23411683

ABSTRACT

About 10% of the drugs in the preclinical stage are poorly soluble, 40% of the drugs in the pipeline have poor solubility, and even 60% of drugs coming directly from synthesis have aqueous solubility below 0.1 mg/ml. Out of the research around, 40% of lipophilic drug candidates fail to reach the market despite having potential pharmacodynamic activities. Microtubule-modulating chemotherapeutics is an important class of cancer chemotherapy. Most chemotherapeutics that belong to this category are plant-derived active constituents, such as vincristine, vinblastine, colchicine, docetaxel, paclitaxel, and noscapinoids. The pKa of a drug considerably affects its solubility in physiological fluids and consequently bioavailability. It usually ranges from 5 to 12 for microtubule-modulating drugs. Hence, the solubility of these drugs in physiological fluids is considerably affected by a change in pH. However, because of unpredictable parameters involved in poor solubility and the low oral bioavailability of these chemotherapeutics during the early phases of drug development, they often have an unusual pharmacokinetic profile. This makes the development process of novel chemotherapeutics slow, inefficient, patient-unfriendly, and very costly, emphasizing a need for more rational approaches on the basis of preclinical concepts. Nanosolvation is a process of increasing the polarity of a hydrophobic molecule either by solvation or cavitization in a hydrophilic macrocycle. The present review therefore focuses on the techniques applied in nanosolvation of microtubule-modulating chemotherapeutics to enhance solubility and bioavailability. The methodologies described will be highly beneficial for anticancer researchers to follow a trend of rational drug development.


Subject(s)
Microtubules/drug effects , Nanotechnology/methods , Tubulin Modulators/pharmacology , Administration, Oral , Antineoplastic Agents, Phytogenic/administration & dosage , Antineoplastic Agents, Phytogenic/pharmacokinetics , Antineoplastic Agents, Phytogenic/pharmacology , Biological Availability , Colchicine/administration & dosage , Colchicine/pharmacokinetics , Colchicine/pharmacology , Cyclodextrins/administration & dosage , Drug Delivery Systems/methods , Emulsions , Hydrophobic and Hydrophilic Interactions , Intestinal Absorption , Liposomes/administration & dosage , Micelles , Microtubules/physiology , Noscapine/administration & dosage , Noscapine/pharmacokinetics , Noscapine/pharmacology , Noscapine/therapeutic use , Particle Size , Polymerization , Solubility , Taxoids/administration & dosage , Taxoids/pharmacokinetics , Taxoids/pharmacology , Tubulin/drug effects , Tubulin/metabolism , Tubulin Modulators/administration & dosage , Vinca Alkaloids/administration & dosage , Vinca Alkaloids/pharmacokinetics , Vinca Alkaloids/pharmacology , Water
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