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1.
Sci Rep ; 9(1): 9278, 2019 Jun 26.
Article in English | MEDLINE | ID: mdl-31243307

ABSTRACT

There is a need to qualify additively manufactured parts that are used in highly regulated industries such as aerospace and nuclear power. This paper investigates the use of resonant ultrasound measurements to predict the mechanical properties of Ti-6Al-4V manufactured by selective laser melting using a Renishaw AM 250. It is first demonstrated why R2 should not be used to assess the predictive capability of a model, before introducing a method for calculating predicted R2, which is then used to assess the models. It is found that a linear model with the resonant frequency peaks as predictors cannot be used to predict elongation at failure or reduction in area. However, linear models did demonstrate better predictive capabilities for Young's modulus, yield strength, and especially ultimate tensile strength.

2.
PLoS One ; 10(7): e0132831, 2015.
Article in English | MEDLINE | ID: mdl-26181416

ABSTRACT

To address the need to study frozen clinical specimens using next-generation RNA, DNA, chromatin immunoprecipitation (ChIP) sequencing and protein analyses, we developed a biobank work flow to prospectively collect biospecimens from patients with renal cell carcinoma (RCC). We describe our standard operating procedures and work flow to annotate pathologic results and clinical outcomes. We report quality control outcomes and nucleic acid yields of our RCC submissions (N=16) to The Cancer Genome Atlas (TCGA) project, as well as newer discovery platforms, by describing mass spectrometry analysis of albumin oxidation in plasma and 6 ChIP sequencing libraries generated from nephrectomy specimens after histone H3 lysine 36 trimethylation (H3K36me3) immunoprecipitation. From June 1, 2010, through January 1, 2013, we enrolled 328 patients with RCC. Our mean (SD) TCGA RNA integrity numbers (RINs) were 8.1 (0.8) for papillary RCC, with a 12.5% overall rate of sample disqualification for RIN <7. Banked plasma had significantly less albumin oxidation (by mass spectrometry analysis) than plasma kept at 25 °C (P<.001). For ChIP sequencing, the FastQC score for average read quality was at least 30 for 91% to 95% of paired-end reads. In parallel, we analyzed frozen tissue by RNA sequencing; after genome alignment, only 0.2% to 0.4% of total reads failed the default quality check steps of Bowtie2, which was comparable to the disqualification ratio (0.1%) of the 786-O RCC cell line that was prepared under optimal RNA isolation conditions. The overall correlation coefficients for gene expression between Mayo Clinic vs TCGA tissues ranged from 0.75 to 0.82. These data support the generation of high-quality nucleic acids for genomic analyses from banked RCC. Importantly, the protocol does not interfere with routine clinical care. Collections over defined time points during disease treatment further enhance collaborative efforts to integrate genomic information with outcomes.


Subject(s)
Biological Specimen Banks/organization & administration , Carcinoma, Renal Cell/genetics , Gene Expression Regulation, Neoplastic , Histones/genetics , Kidney Neoplasms/genetics , RNA, Neoplasm/genetics , Adult , Aged , Aged, 80 and over , Arizona , Carcinoma, Renal Cell/metabolism , Carcinoma, Renal Cell/pathology , Carcinoma, Renal Cell/surgery , Cell Line, Tumor , Chromatin Immunoprecipitation , Female , Gene Library , Histones/metabolism , Humans , Kidney Neoplasms/metabolism , Kidney Neoplasms/pathology , Kidney Neoplasms/surgery , Male , Methylation , Middle Aged , Oxidation-Reduction , Quality Control , RNA, Neoplasm/chemistry , Sequence Analysis, DNA , Sequence Analysis, RNA , Serum Albumin/chemistry
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