Transcriptomic and genomic analysis provides new insights in molecular and genetic processes involved in zucchini ZYMV tolerance.

BACKGROUND: Cucurbita pepo is highly susceptible to Zucchini yellow mosaic virus (ZYMV) and the resistance found in several wild species cannot be considered as complete or broad-spectrum resistance. In this study, a source of tolerance introgressed in C. pepo (381e) from C. moschata, in True French (TF) background, was investigated 12 days post-inoculation (DPI) at transcriptomic and genomic levels. RESULTS: The comparative RNA-sequencing (RNA-Seq) of TF (susceptible to ZYMV) and 381e (tolerant to ZYMV) allowed the evaluation of about 33,000 expressed transcripts and the identification of 146 differentially expressed genes (DEGs) in 381e, mainly involved in photosynthesis, transcription, cytoskeleton organization and callose synthesis. By contrast, the susceptible cultivar TF triggered oxidative processes related to response to biotic stimulus and activated key regulators of plant virus intercellular movement. In addition, the discovery of variants located in transcripts allowed the identification of two chromosome regions rich in Single Nucleotide Polymorphisms (SNPs), putatively introgressed from C. moschata, containing genes exclusively expressed in 381e. CONCLUSION: 381e transcriptome analysis confirmed a global improvement of plant fitness by reducing the virus titer and movement. Furthermore, genes implicated in ZYMV tolerance in C. moschata introgressed regions were detected. Our work provides new insight into the plant virus recovery process and a better understanding of the molecular basis of 381e tolerance.

A new blunervirus infects tomato crops in Italy and Australia.

In this study, we determined the complete genome sequence of a new blunervirus isolated from tomato plants grown in an open field in Italy in the fall of 2018. Like other blunerviruses, the RNA genome of this virus is quadripartite, positive-sense, and single-stranded. Excluding the polyA tail present in each segment, the RNAs 1 and 2 are 5790 nucleotides (nt) and 3621 nt in size, respectively, and each contains a single open reading frame (ORF). The RNAs 3 and 4 are 2842 and 1924 nt long and encode five and two ORFs, respectively. BLASTp analysis of the predicted products of RNA1 and RNA2 ORF1 showed the highest sequence identity (31% and 42%) to tea plant necrotic ring blotch virus (TPNRBV), while the protein encoded by RNA 4 ORF2 had the highest sequence identity (38%) to blueberry necrotic ring blotch virus (BNRBV). These are the only two recognized members in the genus Blunervirus. When the RNA3 ORF3 and ORF5 products were compared with the blunerviruses-encoded proteins, they had the highest sequence identity (30% and 32%) to their TPNRBV-encoded homologs; however, general comparisons showed stronger matches to two different proteins from Acinetobacter baumannii. The proteins encoded by ORFs 1, 2 and 4 of RNA3 and ORF 1 of RNA4 showed no significant BLASTp hits to any known proteins in the databases. Given the limited genetic similarity of this virus to those currently available in the databases, we suggest that this is a new virus, for which we propose the name "tomato fruit blotch virus" (ToFBV). A distinct isolate of the same virus was also detected in Australia.

Occurrence of Potato Tuber Necrotic Ringspot Disease (PTNRD) in Italy.

Potato tuber necrotic ringspot disease, caused by a tuber necrotic isolate of potato virus YN named PVYNTN, was originally described in Hungary in 1980; later on, the disease spread throughout northern and eastern Europe (1). Recently, the virus was reported in Portugal (2) on fresh-market potatoes. During the summer of 1997, the disease appeared in the north of Italy, causing serious damage in processing and fresh-market potatoes. After harvesting, we observed in most of the potato cultivars tubers showing the typical superficial necrotic rings and areas. These viral lesions were predisposed to secondary infection by fungi and bacteria. Moreover, PVYNTN causes degradation of tuber starch into simple carbohydrates. This metabolic activity resulted in undesirable browning in chips. In different areas of northern Italy, samples were collected from 48 stocks of cv. Hermes, the most important processing cultivar in Italy, and from 12 stocks of other potato cultivars (Ernterstolz, Liseta, Monalisa, Primura, Kennebec). The original seed of the stocks came from five different European countries: Austria, Italy, Scotland, Switzerland, and The Netherlands. Samples were serologically tested by indirect enzyme-linked immunosorbent assay with specific monoclonal antibodies to tobacco venial necrosis strain group of PVY. The results showed that 37 out of 60 analyzed stocks were infected by an isolate belonging to PVYN group, 7 stocks were infected by a common isolate of PVY, and 16 were PVY free. To distinguish the tuber-necrosis isolate (PVYNTN) from the PVYN isolates, reverse transcription-polymerase chain reaction (RT-PCR) and immunocapture-RT-PCR were carried out with specific primers for PVYNTN (3). Both tuber and leaf sap were tested. RT-PCR was performed on tuber sap and immunocapture-RT-PCR on leaf sap. Leaf and tuber sap of healthy, PVY-infected, and PVYNTN-infected tobacco was used in each experiment. At least two tubers from each of 32 PVYN-infected stocks were included in the molecular assay. All samples showed an amplified product of the characteristic size for PVYNTN (835 bp), whereas neither the healthy control nor the PVY sample gave a product. All tested cultivars were infected and all countries from which tuber seed came revealed infected stocks. The high proportion of samples in which PVYNTN was detected suggests that the virus is now endemic to potato-growing regions of northern Italy. The weather in these regions during 1997 was mild and drought in winter-spring and very warm in late summer; these conditions were ideal for disease diffusion by vectors and for symptom development. This is the first report of the occurrence of PVYNTN in Italy. References: (1) C. Kerlan. Le Pomme de Terre Française 498:40, 1997. (2) M. C. Serra and H. L. Weidemann. Plant Dis. 81:694, 1997. (3) H. L. Weidemann and E. Maiss. Z. Pflanzenkrank. Pflanzenschutz 103:337, 1996.