Biosensor-guided detection of outer membrane-specific antimicrobial activity against Pseudomonas aeruginosa from fungal cultures and medicinal plant extracts.

IMPORTANCE: New approaches are needed to discover novel antimicrobials, particularly antibiotics that target the Gram-negative outer membrane. By exploiting bacterial sensing and responses to outer membrane (OM) damage, we used a biosensor approach consisting of polymyxin resistance gene transcriptional reporters to screen natural products and a small drug library for biosensor activity that indicates damage to the OM. The diverse antimicrobial compounds that cause induction of the polymyxin resistance genes, which correlates with outer membrane damage, suggest that these LPS and surface modifications also function in short-term repair to sublethal exposure and are required against broad membrane stress conditions.

Distribution and bioconcentration of some elements in the edible mushroom Leccinum scabrum from locations in Poland.

The element concentrations in the fruitbodies of Leccinum scabrum from two forested upland sites and one lowland site of different geochemical background were compared to topsoil concentrations. The aim of the study was to establish baseline concentration datasets, gain insight into the species' bioconcentration potential and to assess the impact of anthropogenic factors. The validated methods for analysis include inductively coupled plasma-atomic emission spectroscopy (ICP-AES) and cold-vapor atomic absorption spectroscopy (CV-AAS). Bioinclusion (bioconcentration factor > 1) by L. scabrum was observed for the elements Ag, Cd, Cu, K, Hg, Mn, Na, Mg, P, Rb, and Zn. In contrast, the elements Al, Ba, Ca, Fe, Ni, and Sr as well as the toxic Pb were bioexcluded. Among these elements, the toxic elements Cd and Pb are noteworthy regarding the aspect of human mushroom consumption. The medians of Cd in caps of L. scabrum from the upland sites were in the range of 5.6-6.6 mg kg-1 dm, with a maximum in an individual sample of 14 mg kg-1 dm, which is in the range of concentrations reported previously for polluted soils. Lead concentrations were much lower, with medians in the range of 0.79-1.3 mg kg-1 dm in caps and 0.48-0.59 mg kg-1 dm in stipes. Mineral contents of L. scabrum appear to be the result of a complex interaction of a species' characteristic physiology with local mineral soil geochemistry and with anthropogenic pollution factors.

Accumulation of Minerals by Leccinum scabrum from Two Large Forested Areas in Central Europe: Notecka Wilderness and Tuchola Forest (Pinewoods).

Leccinum scabrum sporocarps and associated topsoils from two areas in Poland have been characterized for contents and bioconcentration potential of Ag, Al, Ba, Ca, Cd, Co, Cu, Fe, Hg, K, Mg, Mn, Na, Ni, P, Pb, Rb, Sr and Zn. Topsoil and fruitbody element composition varied between the two study sites, most likely as a result of local soil geochemistry. Element content of the labile fraction in topsoil from both sites followed the 'pseudo-total' fraction and median values (mg kg-1 dry matter) were: K 380 and 340, Mg 760 and 840, P 1100 and 920, Al 3800 and 8100, Ag 0.31 and 0.28, Ba 28 and 37, Ca 920 and 790, Cd 0.23 and 0.23, Co 2.0 and 1.7, Cu 3.2 and 3.6, Fe 2800 and 6300, Mn 280 and 180, Na 99 and 110, Ni 7.8 and 8.8, Pb 12 and 18, Rb 1.3 and 2.1, Sr 4.8 and 4.0 and Zn 22 and 19, respectively. Only for some elements such as K, Mg, Al, Ag, Ca, Co, Mn, Na, Ni, Sr and Zn we found concentration differences between the two study sites for the caps of sporocarps. With the exception of Al, Mn, Na and Pb, stipes showed a similar tendency. Caps had a higher concentration of K, Rb, P, Mg, Al, Ag, Cu, Fe, Zn, Cd, Pb and Ni compared to stipes, while Na, Ba and Sr contents were higher in stipes. The comparison of soil and fruitbody concentrations indicates that L. scabrum bioconcentrate some elements while others are bioexcluded.

Metallic and metalloid elements in various developmental stages of Amanita muscaria (L.) Lam.

There is growing evidence that mushrooms (fruiting bodies) can be suitable for biogeochemical prospecting for minerals and as indicators of heavy metal and radioactive contaminants in the terrestrial environment. Apart from the nutritional aspect, knowledge of accumulation dynamics and distribution of elements in fruiting bodies, from emergence to senescence, is essential as is standardization when choosing mushroom species as potential bioindicators and for monitoring purposes. We studied the effect of fruitbody developmental stage on the contents of the elements (Li, K, V, Cr, Mn, Mg, Co, Ni, Cu, Zn, As, Rb, Sr, Ag, Al, Cd, Sb, Cs, Ba, Pb, Tl and U) in the individual parts of the Amanita muscaria fruiting body. Elements such as K, Mg, Mn, Ni, Co, Cu, Zn and Se remained similar throughout all developmental stages studied, however for K, differences occurred in the values of caps and stipes, as expressed by the cap to stipe concentration quotient (index QC/S). The other elements quantified, i.e., Li, V, Cr, As, Rb, Sr, Ag, Al, Cd, Sb, Cs, Ba, Pb, Tl and U are considered as nonessential or toxic (with the exception of V in A. muscaria). Their accumulation in the fruiting bodies and their distribution between cap and stipe did not show a uniform pattern. Pb, Sb, Tl, Ba, Sr, Li, Rb and Cs decreased with increasing maturity of the fruitbodies, implying that translocation, distribution and accumulation in stipes and caps was not a continuous process, while V, Cr, As, Ag, Cd, and U remained at the same concentration, similarly to the essential elements. Our results for A. muscaria confirm that elemental distribution in different parts of fruiting bodies is variable for each element and may change during maturation. Soil properties, species specificity and the pattern of fruitbody development may all contribute to the various types of elemental distribution and suggest that the results for one species in one location may have only limited potential for generalization.

Modeling nitrous oxide emissions from digestate and slurry applied to three agricultural soils in the United Kingdom: Fluxes and emission factors.

Organic fertilizers, such as digestates and manure, are increasingly applied in agricultural systems because of the benefits they provide in terms of plant nutrients and soil quality. However, there are few investigations of N2O emissions following digestate application to agricultural soils using process-based models. In this study, we modified the UK-DNDC model to include digestate applications to soils by adding digestate properties to the model and considering the effect of organic fertilizer pH. Using the modified model, N2O emissions were simulated from two organic fertilizers (digested food waste and livestock slurry) applied to three farms in the United Kingdom: one growing winter wheat at Wensum (WE) and two grasslands at Pwllpeiran (PW) and North Wyke (NW). The annual cumulative gross (i.e. not excluding control emission) N2O emissions were calculated using MATLAB trapezoidal numerical integration. The relative errors of the modeled annual cumulative emissions to the measured emissions ranged from -5.4% to 48%. Two-factor models, including linear, exponential and hyperbola responses, correlating total N loading and soil clay content to calculations of N2O emissions and N2O emission factors (EFs) were developed for calculations of emission fluxes and EFs. The squares of the correlation coefficients of the measured and two-factor linear modeled emissions were 0.998 and 0.999 for digestate and slurry, respectively, and the corresponding squares of correlation coefficients of the EFs were 0.998 and 0.938. The two-factor linear model also predicted that the EFs increased linearly with decreasing clay content and the maximum EFs for digestate and slurry were 0.95 and 0.76% of total N applied, respectively. This demonstrates that the modified UK_DNDC is a good tool to simulate N2O emission from digestate and slurry and to calculate UK EFs using TIER 3 methodology..

Bio-concentration potential and associations of heavy metals in Amanita muscaria (L.) Lam. from northern regions of Poland.

Fruiting bodies of Amanita muscaria and topsoil beneath from six background areas in northern regions of Poland were investigated for the concentration levels of Ag, Al, Ba, Ca, Cd, Co, Cu, Fe, Hg, K, Mg, Mn, Na, Rb, Sr, and Zn. In addition, the bioconcentration factors (BCF values) were studied for each of these metallic elements. Similar to studies from other basidiomycetes, A. muscaria showed species-specific affinities to some elements, resulting in their bioconcentration in mycelium and fruiting bodies. This mushroom growing in soils with different levels of the geogenic metallic elements (Ag, Al, Ba, Ca, Co, Cu, Fe, Hg, K, Mg, Mn, Na, Rb, Sr, and Zn) showed signs of homeostatic accumulation in fruiting bodies of several of these elements, while Cd appeared to be accumulated at a rate dependent of the concentration level in the soil substrate. This species is an efficient bio-concentrator of K, Mg, Cd, Cu, Hg, Rb, and Zn and hence also contributes to the natural cycling of these metallic elements in forest ecosystems.

Modeling nitrous oxide emissions from three United Kingdom farms following application of farmyard manure and green compost.

Organic fertilizers, such as manure and compost, are promising additions for synthetic fertilizers in order to increase soil fertility and crop yields. However, the organic fertilizers applied to soils may increase nitrous oxide (N2O, a greenhouse gas) emissions due to their lower C/N ratios, and therefore potentially contribute to global warming. Very few studies have used process-based models to assess the environmental advantages and drawbacks of compost soil amendments compared to other field treatments. In this study, the UK-DNDC model was modified for simulation of nitrous oxide (N2O) fluxes emitted from the soils treated with green compost and farmyard manure at three UK farms (WE, PW and NW): one winter wheat and two grasslands. The results show that the annual overall N2O emissions were 1.45 kg N ha-1 y-1 for WE treated with farmyard manure, 0.71 for WE with green compost, 1.09910 for PW treated with farmyard manure, 0.94 for PW treated with green compost, 1.19 for NW treated with farmyard manure, and 1.18 for NW treated with green compost. A two dimensional linear model was developed to correlate nitrogen loading and soil pH for calculations of emissions and emission factors (EFs). The linear model could fit the emissions obtained from the UK-DNDC model well. The squares of correlation coefficients of the emissions between two models are 0.993 and 0.985 for farmyard manure and green compost, respectively. Analysis of correlation coefficients between N2O emissions and air temperature, precipitation as well as the time period between fertilizer application and sample measurement (PFS) for the three sites treated with farmyard manure and compost indicated that N2O emissions were mainly related to PFS. The modified DNDC model provides an approach to estimating N2O emissions from compost amended soils.

Mycoremediation of hydrocarbons with basidiomycetes-a review.

The literature on hydrocarbon remediation with basidiomycetes was reviewed. Two ecological groups are considered for bioremediation, the saprotrophic basidiomycetes (white-rot and brown-rot fungi) and the ectomycorrhizal basidiomycetes. A remarkable capacity of basidiomycetes for in vitro degradation of simple and recalcitrant hydrocarbons, such as PAH, persistent organic pollutants (POPs), halogenated HC, aromatic HC and phenols, explosives and dyes was reported for many species. However, there is a need for more studies on the practical feasibility of field applications with basidiomycetes.

Decline of ectomycorrhizal fungi following a mountain pine beetle epidemic.

Forest die-off caused by mountain pine beetle (MPB; Dendroctonus ponderosa) is rapidly transforming western North American landscapes. The rapid and widespread death of lodgepole pine (Pinus contorta) will likely have cascading effects on biodiversity. One group particularly prone to such declines associated with MPB are ectomycorrhizal fungi, symbiotic organisms that can depend on pine for their survival, and are critical for stand regeneration. We evaluated the indirect effects of MPB on above- (community composition of epigeous sporocarps) and belowground (hyphal abundance) occurrences of ectomycorrhizal fungi across 11 forest stands. Along a gradient of mortality (0-82% pine killed), macromycete community composition changed; this shift was driven by a decrease in the species richness of ectomycorrhizal fungi. Both the proportion of species that were ectomycorrhizal and hyphal length in the soil declined with increased MPB-caused pine mortality; < 10% of sporocarp species were ectomycorrhizal in stands with high pine mortality compared with > 70% in stands without MPB attacks. The rapid range expansion of a native insect results not only in the widespread mortality of an ecologically and economically important pine species, but the effect of MPB may also be exacerbated by the concomitant decline of fungi crucial for recovery of these forests.