"DNA signaturing" database construction for Tetradesmus species identification and phylogenetic relationships of Scenedesmus-like green microalgae (Scenedesmaceae, Chlorophyta).

Species identification of Scenedesmus-like microalgae, comprising Desmodesmus, Tetradesmus, and Scenedesmus, has been challenging due to their high morphological and genetic similarity. After developing a DNA signaturing tool for Desmodesmus identification, we built a DNA signaturing database for Tetradesmus. The DNA signaturing tool contained species-specific nucleotide sequences of Tetradesmus species or strain groups with high similarity in ITS2 sequences. To construct DNA signaturing, we collected data on ITS2 sequences, aligned the sequences, organized the data by ITS2 sequence homology, and determined signature sequences according to hemi-compensatory base changes (hCBC)/CBC data from previous studies. Four Tetradesmus species and 11 strain groups had DNA signatures. The signature sequence of the genus Tetradesmus, TTA GAG GCT TAA GCA AGG ACCC, recognized 86% (157/183) of the collected Tetradesmus strains. Phylogenetic analysis of Scenedesmus-like species revealed that the Tetradesmus species were monophyletic and closely related to each other based on branch lengths. Desmodesmus was suggested to split into two subgenera due to their genetic and morphological distinction. Scenedesmus must be analyzed along with other genera of the Scenedesmaceae family to determine their genetic relationships. Importantly, DNA signaturing was integrated into a database for identifying Scenedesmus-like species through BLAST.

Isolation of indole-3-acetic acid-producing Azospirillum brasilense from Vietnamese wet rice: Co-immobilization of isolate and microalgae as a sustainable biorefinery.

Production of indole-3-acetic acid (IAA) is well documented in various studies for the bacteria that inhabit the rhizosphere of plants, but with roots of wet rice, the outstandings have been not yet elucidated. This study began with the isolation of bacteria type strain Azospirillum sp. and developed the investigation to a screening of their ability in IAA production. This screening conducted a selection of only bacteria that was capable of the production of IAA with its content of over 25 µg. mL-1 for sequencing. Of 10 isolates only one resulted from the type strain Azospirillum brasilense (A. brasilense) with a similarity of 100%. Various factors that influence A. brasilense in biosynthesizing IAA such as temperature, pH, nitrogen presence and concentration of tryptophan in the culture medium were examined. The results indicated that the culture conditions were suitable for IAA biosynthesis at pH 6.5, 30 °C, culture media with nitrogen, and 0.1% trytophan. The next survey on the role of the immobilization of this bacteria with microalgae in alginate was highlighted to its support in microalgal growth. With the co-immobilization of bacteria and microalgae, the density of Chlorella vulgaris was significantly increased during 15-day culture, inducing 2.2 times of cell content in culture batch microalgae immobilized A. brasilense higher than that free-bacteria.

Urban drainage channels as microplastics pollution hotspots in developing areas: A case study in Da Nang, Vietnam.

This study provides information on the current situation of microplastics contamination in inland freshwater bodies in Vietnam. An urban drainage channel in Da Nang City was selected as a case study. Receiving mainly domestic wastewater and landfill leachate, the channel itself is becoming a microplastic pollution hotspot with a microplastic concentration of 1482.0 ± 1060.4 items m-3 in waters and 6120.0 ± 2145.7 items kg-1 in sediments. The dominant shapes of microplastics were fibers and fragments, in which the polymer types were mainly polyethylene, polypropylene, and polyethylene terephthalate. Microplastics with sizes ranging from 1000 to 5000 µm tended to be distributed primarily in surface waters, whereas particles from 300 to 1000 µm accumulated in sediments. The channel places Da Nang Bay at a high risk for microplastic pollution, with an estimated pollution load of approximately 623 × 106 items d-1 in dry weather.

Baseline assessment of microplastic concentrations in marine and freshwater environments of a developing Southeast Asian country, Viet Nam.

In aquatic environments, assessment of microplastic concentrations is increasing worldwide but environments from developing countries remain under-evaluated. Due to disparities of facilities, financial resources and human resources between countries, protocols of sampling, analysis and observations used in developed countries cannot be fully adapted in developing ones, and required specific adaptations. In Viet Nam, an adapted methodology was developed and commonly adopted by local researchers to implement a microplastic monitoring in sediments and surface waters of 21 environments (rivers, lakes, bays, beaches) of eight cities or provinces. Microplastic concentrations in surface waters varied from 0.35 to 2522 items m-3, with the lowest concentrations recorded in the bays and the highest in the rivers. Fibers dominated over fragments in most environments (from 47% to 97%). The microplastic concentrations were related to the anthropogenic pressure on the environment, pointing out the necessity in a near future to identify the local sources of microplastics.

Characteristics of microplastics in shoreline sediments from a tropical and urbanized beach (Da Nang, Vietnam).

Microplastics in shoreline sediments were investigated from Da Nang beach for the first time. Sediment samples at the two depth strata (0-5 cm and 5-10 cm) at eight sites along the entire coast were collected for identifying the characteristics of microplastics, including their concentration, size, shape, color, and nature. The synthetic fiber was the predominant type of microplastics, accounting for 99.2% of the total items. Blue (59.9%) and white (22.9%) were the most common colors of the fibers. Synthetic fibers showed a homogenous distribution at all sampling sites with a mean concentration of 9238 ± 2097 items kg-1 d.w. Meanwhile, the fibers tended to concentrate much more at the surface stratum than the deeper stratum. A large number of synthetic fibers (81.9%) were in the size range of 300-2600 µm, which might pose a threat to marine biota and human health.

A new rotifer species: Lecane langsenensis n. sp. (Rotifera: Monogononta) from Vietnam.

Lecane langsenensis n. sp. is described from two locations in Vietnam: Lang Sen Reserve, Long An Province, and the Huong River, Thua Thien Hue Province. It is distinguished from L. arcula, L. aculeata and L. superaculeata by its longer lorica, antero-lateral spine, and claws. Moreover, the size and shape of L. langsenensis, L. arcula, L. aculeata, and L. superaculeata were measured and compared. The results showed that these species are completely different.